RNA id: XR_006250644.1


Basic Information

Item Value
RNA id XR_006250644.1
length 5532
RNA type transcript
GC content 0.53
exon number 51
gene id dock4b
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2299635 ~ 2375716 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGCCGCACCGTGGCCGCGCGCCGGCTTACCGAACGCGCGCCGCCGCGTCTCGTCTCGTGCAGCGCAGTTCGCTCGAGCGCTCTGAACAATGACTGCGCGAGAGGATGATGTGAATCTGGACAAATGAGTGGTTTAACATCAGTCCTGCACGCCGCGCTGTTTTGTACGCTTTTCTCACAACAAACGCTCTGAATATGTGGATTCCCACGGAACACGAGAAATACGGAGTCGTGCTGGCCAGTTTTCGAGGAACGGTGCAGCATGGCTTGCCTCTGGAGATCGGTGACACGGTGCAGATTTTGGAGAAATGTGAAGgttgGTACAGAGGATTCGTCCTCAAGAACCCCAATGCCAAGGGCATTTTCCCATGCAGCTACATCCATCTGAAGAATGCTAATATCAAGAATAAAGGGCAGTTCGAGACGGTGGTGCCGACCGAAGACTCTGTCATTACGGAGATGACGTCCACCCTGAGGGACTGGGGCGCCATGTGGAAGCAGCTCTTTGTGAAAAATGAAGGTGATCTGTTTCACAGACTGTGGCACGTGATGAACGAGATCTTGGACCTGAGGAGGCAGGTTTTGGTGGGTCACCTGACCCACGACCGCATGAGGGACGTCAAACAGCACATCACGGCTCGTCTGGACTGGGGCAACGAGCAGCTGTGTTTGGACCTGGTACCCAGGAGGGAGTTCAGCATGGTGGACCCGGACGAAATCAGCGTCACCGAGCTCTACCGCCTGatggagaaTCGGCACAGAAAGAAGGAAACTCCGACGCCTGTCAGCACACATCACCTGTTTGTCCACCTGAAGAGTCTGATGAGCTCAAACCTGGGTGAAGAGCTGGAGGTCTTCTTCTTCATCTACGACAGTCGAGAGAGCAGACCGCTCAGTGAAAGGTTCTTTGTTAAACTCAATAAAAACGGTCTGCCAAAGTTTCCAGAGAAGAGCGAAAGACAATGCACACTTTTTGTGGATCTGGGCAGCGGTGACCTGAGGAAAGACGTGTATATTGTGGTACACATCATTAGGATTGgGAGGATGGGTGCAGGAGAGAAGAAGAACACGTGTAATGTACAGTACAGACGTCCGTTCGGCTGCGCTGTGGTCAGCATCGCTGATCTTCTCACTGCTGACTCCAAAGATGACCACCTGCTGAAGGTCTACGCCTGCAACACAGAGAGCGACTGGAGTCAGATTCACGACAACATCATTAAGAAAGTCAACTCCAGATATAACCTCTCAGGATCCAACACAGGTCTGGCGGTGGCTCTTCAGTTGCTGCACGGCGACATCGAGCAGCTCCGGAGAGAATACATGGTGCTCTTCACCAGAGGAGTGTCCATTACCAAAAAACTGGGCTTCTCTGACGTCATCATGCCAGGTGAGATGAGAAACGATCTCTACATAACGCTGGAGAAGGGCGAGTTCGAGAAGGGAGGGAAGAGCGTGGCGAGGAACGTAGAGGTCACCGTCTACGCGCTGGACGCCGATGGACAGATCCTCAAGGGGTTTGTGGCCGTGGGCTCGGGCGAGCCAGGCGGAGACGAGTATCACACCTTCGTGCTTTACCACAACAACAGCCCGCGCTGGGCGGAGTTAATCAAGCTGCCCATCCCTGTCGACATGTTCCGGGGCTCTCACGTCCGTTTCGAGTTCCGCCACTGTTCCACAAAAGACAAGGGGGAAAAGAAGCTGTTCGGCTTCTCATTCGTTCCTCTAATGCAGGAAGACGGGCGGACTCTTCCCGACGGCACCCACGAGCTCATCGTTCATAAGTGTGAGGAGAACGCTAACCTGCAAGAATGCGCTCGCTACCTCAAGCTGCCCTTCTCAAAATCAAATCTGCCCGGCAACAACCAAACTATGAAAGGCACTAAGGAATCCCTATGGATCACATCATTCCTCTGCTCTACCAAACTCACTCAGAACGGTGACATGCTGGACTTACTGAAGTGGAGAGCCCACCCGGAGAGAATCAGTGACAGCCTGTCTAAACTCAAAGAGATCGATGGCTCAGAAATAGTTAAGTTTCTGCAAGATACACTGGACACACTTTTCGGCATTTTGGATGAGAGTTCACAAAGATATGCACTCAAGGTGTTTGATTGTCTGgtgCACATTATAAACTTGCTCCAGGACAGCAAGTTCCAGCATTTTAAACCAGTCATGGACACCTACATCGAAAGCCACTTTGCAGGAGCCCTGTCATACAGGGATCTGATCAAGGTGCTAAAGTGGTACGTCGATCGTATTATTGAAGCAGATCGTCAGGAACACATCCAACAGGTGCTGAAGGCGACGgagtatatttttaagtatattatcCAGTCGCGACGGTTGTTTGCTCTGGCCACGGGCGGACAGAACGAGGAGGAGTTCCGCTGCTGCATGCACGAGCTTTTCATGTCCCTCCGATTCTTCCTCTCACAGGAGAACAAGGGCTCTCGGCCCATCACACAGTCACAGGCGGTGTTCCTGCAGTCGTTCCCGGCTGTGTACGGGGAGCTGCTGAAGCTCTTCACGGTCAGGGAAGTGGCCACGTTCGTCCGAGAGACGTTGGGCAGCATCCCCACCGTGTCCCAGGCTGACTGCCCCCTGGAGGCCGTCAAACTGAACTGCATCGCCAAAACCGTCGAGAGCCAGCTCTACACAAACCCCGagTCTCGATGTGTCCTGCTCCCGGTGGTGCTGCGTTTGCTTCAGGCTCACATGCAGGAGCAGCGAGATCTCGTCATGTGCGCTCACATACTCACCTGCATGCTGTCTCTCCTCAAGAAAGACGACACGGAGCCGGCCGTATCTGAAGAGGTGGATCTGATTGTGGAGAGCGTTTTGGGGGTGTTACTGCGAACCATATTAGAAATCGCTAACCGGCCACAACCGGCAGGACCTGCCCTACGGCCCCAAGTTCAAGACGTCACGGGCGATTTTGTGTCGTGTCTTCTGGCTCTGTTGAGGCATATGAAGGACAGACACTACCAGCAGCTCCTGCAGAGCTTCACCAGCAAAGAGGACCTGCGGgaCTTTCTCCTGCATGTCTTCACCGTGTTTCGCATCCTGATAAGACCAGAGATGTTCCCTAAAGACTGGACGGTCATGCGGCTCGTCACTAATAAcatcatcatcaccacGGTGCTCTACCTGTCAGACGCTTTAAGAAAAAACTTCCTCAATGACAAGTTTGACTTTAAGGTGTGGGATTCCTACTTCTGCCTGTCTGTTATATTCATCAACCAGCCCTGCCTTCAGCTGGAGACCTTCTCTGCCTCAAAGAGGAAGAAGATACTGGAAAAGTACGGAGACATGCGTGTCATGATGGGATGCGAGATCTTCAGCATGTGGCAGAATTTAGGAGAGCACAAGCTGAACTTCATCCCAGCGATGATCGGGCCGTTCCTGGAGGTGACGCTGGTGCCTCAGCCGGACCTGAGGAACGTCATGATCCCTATCTTTCACGACATGATGGACTGGGAGCAGCGCCGGAGCGGCAACTTCAAACAGGTGGAGGCGAAACTCATCGACAAGCTGGACAGCCTCATGTCAGAGGGGAAAGGAGACGAAACGTACAGAGAGCTCTTCAACAGCATAATTCCTCTGTTCGGTCCGTATCCTAGTCTGTTGAAGAAGATCGAGAGAGAGACGTGGAGAGAGAGCGGGATATCCCTCATAGCCACGGTCACACGGCTCATGGAGCGACTGCTGGATTACAGagaCTGTATGAAGCTAGGGGAAGTGGATGGAAAAAAGATTGGCTGTACAGTCAGTCTGCTGAACTTCTACAAAACGGAGCTGAATAAAGAGGAGATGTACATCCGCTACATTCACAAGCTGTATGACCTGCACCTGAAAGCACAGAATTACACAGAGGCCTCATACACGCTTCTGCTGTACGACGAGCTGCTGGAGTGGTCCGAGAGGCCCTTGCGGGAGTTTCTGAGTTACCCGATGCAGAGCGAGTGGCAGAGGAAGGAGTATCTGCACCTCACCATCATCCAGAACTTTGACCGGGGAAAGTGTTGGGAGAACGGCATTATCCTGTGCAGAGAGTTAGCAGACCAGTACGAATCCTACTACGACTACAGAAACCTCAGCAAAATGAGGATGATGGAAGCTTCgttttatgataaaataatgGACCAACAGCGTCTGGAGCCAGAGTTCTTCCGAGTGGGCTTCTACGGCAAGAAGTTCCCTTTCTTTCTACGGaaTAAGGAGTTTGTGTGCCGTGGTCATGACTACGAGCGTCTGGAGGCGTTCCAGCAGCGCATGCTCAATGAGTTTCCTCACGCTATCGCAATGCAACACGCCAACCAGCCTGACCAGACCATCTACCAGGCTGAAGCCCAGTATCTTCAGATCTACGCTGTCACGCCGATCCCAGACAGCCAGGACGTCCTGCAGCGGGACGGTGTCCCTGACAACATCAAGAGCTTCTATAAGGTTAACCACATCTGGAGGTTTCGCTACGACCGCCCGTTTCACAAGGGCaccaaagacaaagaaaacgaGTTTAAGAGCCTGTGGGTAGAACGAACAACGTTAACGCTTGTTCAGAGTCTCCCGGGCATCTCACGCTGGTTTGAAGTGGAGAGGAGAGAGCTGGTGGAGGTGAGTCCTCTGGAGAATGCTATCGAGGTCATCGAGAACAAAAACCTTCAACTGCGGACGCTGATCACGCAGTGTCAAACCCGGCAGATGCAGAACATCAACCCCCTGACCATGTGTCTCAACGGCGTCATCGACGCGGCTGTCAACGGAGGTCTCGCTCGCTATCAGGAGGCGTTCTTCGTGAAGGACTACATCATGAATCACCCCGAAGACGGAGACAAAATCGGCCGTCTGCGAGAGCTCATGTTTGAGCAGGCTCACATACTGGAGTTCGGCTTGACGGTGCATGAGAAGTTCGTTCCTCAGGACATGCGACCTCTGCACAAGAAACTGGTGGATCAGTTTCATCTGATGAAGTCCAGCCTCGGCATACAGGAGTTTCCAGCGTACGTGCGAGCCAGTCCGATCCACTTCACCAACGGAAGCCCTCGAGCCGGAAGAAACTCAGCACCCAACATAATGAGTCCAGAGGGAGGAGCACGTGTGGTGTCACGCCGCAGTCCCCTCAGCTACCCAGCGGTCAACCGCTACTCTTCATCCTCGCTGTCGTCGCAGGCCTCCAATGAAGTGAGCAACATCACGGGCCAATCAGAGAGCTCAGATGAAGTCTTCAACATGCAGCCGAGTCCGTCTACCTCAAGTCTCAGTTCCAATCACTCGGCCTCTCCCAACGTGACCAGCTCAGCTCCGTCTAGTGCCAGAGAGGCCGGTTCCACACCCAGCGGGCGACGCCTCCTTGCCTCGCAGTGACCCCAGCATCTCCACCCCTGACAAAGGATCTCCTGCCAAGACTACACGATCACAGTCCCCCGTGATGACATCACGCTCGCCGCAGAAGACCTCTGCGCCTCCGTTCACCCCCTCGCCCACCGAGTGCCAGTCGACAGGGTTGGTGTCGAATTCTCCGGTGCTTTCTGG

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250773.1 lncRNA downstream 13208 2279226 ~ 2289119 (-) True LOC122343417
TU37692 lncRNA downstream 18549 2283285 ~ 2283778 (-) True G25362
TU37686 lncRNA downstream 23045 2203585 ~ 2279282 (-) False LOC122343417
XR_006250782.1 lncRNA downstream 119658 2167305 ~ 2182669 (-) False LOC122343454
XR_006250783.1 lncRNA downstream 119658 2167305 ~ 2182669 (-) True LOC122343454
TU37702 lncRNA upstream 96568 2472284 ~ 2473034 (-) False LOC122342907
XR_006250774.1 lncRNA upstream 158489 2534205 ~ 2538006 (-) True LOC122343423
TU37715 lncRNA upstream 159356 2535072 ~ 2537458 (-) False LOC122343423
TU38074 lncRNA upstream 604443 2980159 ~ 2996458 (-) True G25625
TU38062 lncRNA upstream 631054 3006770 ~ 3012214 (-) True ccdc3a
XM_043236029.1 mRNA downstream 204591 2091351 ~ 2097736 (-) False tnni4a
XM_043237018.1 mRNA downstream 213748 2042953 ~ 2088579 (-) False cald1a
XM_043237016.1 mRNA downstream 213748 2042953 ~ 2088579 (-) False cald1a
XM_043237019.1 mRNA downstream 213749 2042953 ~ 2088578 (-) False cald1a
XM_043237017.1 mRNA downstream 234403 2042953 ~ 2067924 (-) False cald1a
XM_043237098.1 mRNA upstream 39950 2415666 ~ 2423463 (-) True tmem168a
XM_043236237.1 mRNA upstream 91371 2467087 ~ 2471272 (-) True gpr85
XM_043237102.1 mRNA upstream 96576 2472292 ~ 2473068 (-) True LOC122342907
XM_043237100.1 mRNA upstream 124058 2499774 ~ 2504213 (-) True ppp1r3aa
XM_043237099.1 mRNA upstream 124058 2499774 ~ 2504210 (-) False ppp1r3aa
XR_006250653.1 other downstream 213748 2042953 ~ 2088579 (-) True cald1a
TU37444 other downstream 399760 1901843 ~ 1902567 (-) False rsph9
TU37319 other downstream 647520 1653591 ~ 1654807 (-) False ccdc167
XR_006250650.1 other downstream 684029 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other downstream 684029 1609360 ~ 1618298 (-) False zgc:113263
TU38086 other upstream 645346 3021062 ~ 3021457 (-) False LOC122342805
TU38175 other upstream 1159121 3534837 ~ 3547467 (-) False LOC122342819
TU38177 other upstream 1172510 3548226 ~ 3577096 (-) False LOC122342819
TU38193 other upstream 1225284 3601000 ~ 3601974 (-) False LOC122342822
TU38194 other upstream 1226642 3602358 ~ 3604270 (-) False LOC122342823

Expression Profile