RNA id: XM_043236872.1


Basic Information

Item Value
RNA id XM_043236872.1
length 4983
RNA type mRNA
GC content 0.43
exon number 3
gene id ppm1ab
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16987308 ~ 16993364 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGGGTCCCAAACAAACCCATCCGcgcggagagagagaggcgcTCTGAGTTCGAGGCTCCGGTAGCCCCCCCTCGGGAAAACAACGAACCGGAGCCAGAAATGCCCCACCGCCCAGCTGCGGACCGCCTTAACGGGCTCATGTGATGCCTTTCAtatgtttatagttttttttttattttcgttAATCGATATCTGGCTGTTTTGGCGTTAGTTTGCGTGCTAATAGGCTAGCCATCGATTGATGGGTGTTGTGTGACCGCTGGTTTGTAGTGTTTGGTATCCGGCCCAACATACTGATATTAAGGCTCTTACTCGCGGCTTTGGTGCCTCGGTGTTTGTTCCTCCAGCGGAGACCGCGAAGAAGCTGGagCAAAATAAGAAGAATGGGTGCGTTCTTAGACAAGCCAAAGATGGAGAAGCACAATGCTCACGGGGAGGGGAACGGCCTGCGCTATGGACTCAGCAGCATGCAGGGATGGCGTGTGGAGATGGAGGACGCACACACAGCTGTGATGGGGCTGCCTTACGGCCTCGGCCTGTGGTCTTTCTTTGCCGTCTACGATGGGCATGCGGGCTCTCAGGTTGCTCGTTACTGCTGTGAGCATCTGCTGGAGCACATCACCAGCAACCCGGACTTCAGGGGAGGCTGCCCAGGGGGCGGGGACTCAATTAACGCCGAGCCCTCCGTGGAGAGCGTGAAATGCGGAATCCGCACGGGCTTCCTGCAGATCGACGAGCACATGCGGGTCATGTCCGAGCGCAAGCACGGGGCCGACCGCAGCGgttccacggcggtgggtgtgATGATTTCCcctcatcatttttatttcatcaattGCGGCGACTCCAGAGCCTTGCTGAGCCGCAAGGGTCGCGTCCACTTCTTCACCCAGGACCACAAGCCCAGTAACCCCCTGGAAAAGGAGAGAATCCAGAACGCGGGTGGTTCTGTAATGATCCAGAGGGTCAACGGCTCTCTCGCCGTCTCGCGTGCTCTCGGTGACTTCGACTATAAGTGCGTGCATGGGAAAGGCCCCACCGAGCAGCTGGTGTCCCCGGAGCCCGAAGTGTACGAGATCGAACGCTCTGAGACTGATGACGAATTTGTGGTGCTGGCCTGCGATGGCATTTGGGATGTCATGGCCAACGAAGAACTGTGTGATTTTGTGCGTTCCCGCTTGGAGGTGACGGAGGACCTGGAGAGAGTGTGTAATGAGATCGTGGACACATGTTTGTACAAGgGTAGTCGAGACAACATGAGTGTGGTGCTGGTATGTTTTCCCGGTGCCCCAAAAGTCAACCCAGAAGCCGTGAAGCGAGAGGCGGAGTTAGATAAGTACCTGCAGAACAGAGAGGGTGGAGCATGTAAAAAGgcgaataaataaaaaaaatatgacaatgaCTAAGAGAGAGTTATAGAACGTGAGCATTCTTACTTAATTAGGTGAGTTTCTTAGATGGCAGTTCACACTTGCCAATGAAGTATACGTTACAGTTAACGTAAAGTTTCCAATTAACGAATCCCCATATTGGAGAGGAAAGACTCACTGGTACTGTATTAGCACAGTTAGGACTATTCAGGATCAATTTTAACCAGAGAGAAATACAGTGTGAATTTATTTGAGCTTATATTGATAATTAGAGGCCTTTATTTATTGCCAATATTAAAAAGCACTTACACAATTTAGAGGTAACCTTTAGCTTTACCAGAGGTTTTATTGTAGTGTATCCGAGAGTCCTACGCTCCAGCGCAAATTACTTGGCGTATTATTAGCTACTAAGTGATGGTGAGTAAGTGCAATTGTAGATTAGGAAAAAGGAACGATGAAAACCCAACATTTGGCTCTGCACTTTTTCATTAAACGCTGCTATACTTAAAGGCATCTTCTAATAATAAGAGAGAGACCAAATTTGAGATCTCAGTTAGaatataatatgtttgtgtTCGAAGCAGAATTAATACAAAGTGTAGTTTTGCGTTCTGTTCGTGACGGTGCGTTCTTCAGATAGTTGTATTCATCCACTTGTACAAGCATGTGTTTAAGTCTGGCACCCGTTTCATTTGCATCTTTCTGAAAAGTCGTTCTAAATGAGTGAATGTCAGGCCTCCACTGCTGATTACCTGAAATTGTAGCTGACACTGCTGTACGTGGCCTGATGGTGCAGTTTTGTGTCTACAGCAATGGCCATGAGCATTTTAATCTGCATGATTCCTGTTCTGTAATGAGGAACATTGTTGCCTTAGTCCTAATTTACAGTGACTACCTTGATTAGAATCGATAGGTTAGCACTTGGTGTCCGACCCCAACTGCTTGGAAGAGTAAAATTAAATCCAGTGGACACATGGTACTGAAAGCATGCACTGTACCGCTAGCACGATAAGTTGTGTACACCTCCTGCATGTACGctacattaagaaaaaaaaaaaacagggataGATCTTATTTAGAATTAAGTTGGTCTGATagttttatactttgtacagTATACATTTGTAACCCACGAGGAACAGCTTCCGTGTGAACTGAACACAGTATTGGAAAGATCGCGTCGATGTTTTACAATCCTCTCTGAGTTGTTTACTACTTGTTGCCTCAAACTGACGCTTTGTCAATCCTCTGGTTTGTCTGTGTAACTATTAATTCGTTTAGTTAGGAAATCCTCGGTGCATAGAGTGGGATTCAGCCTACCTGCACGTTTTGGGATGTAGATGCTTGTTGGTACAATGACTGAGCATTTATAGTACAGCGGTACACTGCTTTTGTGTCTGTAAAACCCAACAAGATTTGGAGATTCTGGAAGCTAAGTCTCATTTAATTGTGTATTTGAACCCTTTAGACACCTCCAAAGGAAAATTTACTTTCCCACCTTTCATTTCAAACCCACGGAAACCCATCCATTAAAAACTTTGGATCCcattaatgttgaaaatatttaaaatcggctaatattttaatatatcgtcttataaataataataaaaaaaacccatcatttTGAGGTTTGTAATAAATtgacacttttcatttttgggagacattttaaataaggcACGATGTAATGCAATCAGTCAGAAAACGGTTCCCACTGTTTCAGAATGTGAAAGTCACCCaatcacccaaaagtgaaaattaccccatgatttactcgcCCTCGAGTTGTTTTACTCAAATAATCCAAATAATCAGCAAGTAATCAAACAGTTGAAATAAAGTATCTGTCAAGAGTGTGTTATTGTCCCCATAAGGTGggacatttagtgtaaatagccgCTGTCTAGTTAAAATGTTTGGATGAACTATCTTTTTAAATCTGGTCAATTTTCGGTGTGGACAGGTCTACCAGTGCACCACAAGAAAAAATAGTTTAGTGTCAGTTTAGTTGCGCCTTGTTACAGAAACTTAGTTTTGCCTGCATTAGTAAAGCATGGGGTTCTTTCTCTTTAGGTACATTTTCCCTTACAACCAAAAGATCCCACACGTTCTTCACGTCTTTGTATTGCCAGGAGAAATATGTTAGCTTTAAGATGTGTTTAACCGAATGAATAACATAGTGTGCCTGCTCTAAGAGAGAACTCTTGAGATTAAAATGATTGTAGGTCATTCCTGTACCATATCAGTTTCGTTTCGCTTGGGTTTGTTGTTGTATCTCCTCACTGTCTGACACGGCTCGATAATCCACTGTTTATTAAATTAGCCTTAATTATTTTCTTCCATAATAGCACATCTGAGATCTTGTACGCTTCGGTGAGACATGTAACGTGTTTGTAGCCTGACAGGTTTTTCTGGGAGAGCCTTTAATTGTGCCTACGAGTGATTCTATGGCCAGTTGTAGCATTCAAATGAACTTTCTAAGTCTTGTAAGGtggttttgttcgttttgtaacattattctACTCGAGCGTCATTTTAGCTTGTGCATTCAGTAGCACATTTGGCCCCTTACAGCAAGTGCCATACGAGTGATTTTAAACCATTCACCTGAGATTATTGCTGCACAAAGCACAACCCAAACCCCTAATGAGTCAAACGTGGGGTGGAAATATTGCcttacagaaaaataaagcagGCATTAAATGGGCCATTTAAGTATTGTAGGAGATTTGCCTTGATTTCGAACACTGTAGCACCATCAAATTGAGATCTAAAGGGAAAGAAAATGTCAACTGTAAGTCTGTCCTGTTCATTGGATTTCGATCGAAGCAACCGACTGCTAATAAAAAAGGCCTTTGTAACGCATTGGATAACTTCAAAATGTATCTTCTGGAGTGTTAATCAAAAGGGCAAACGGAGCccatttactgtcatttacttGCGCTGTGTTGTGCCGTTGGTCCCTGTGTGTCACTTCTGTCTTTACCTCTCAGGTCCAAACTGACAAGCAACAGAGGAcactatttatttgaattatttattgtctttatgGTATTTTACCTCTTTTGAATGAAACTGTCCATGCATTCCATTTTCTTTAGCCAAATAAGCACTACTAATGCAATGAAAAGCTTCTATTCTTTTCTTcttgtatttattgttatacaTCCTCGTCACGAATGGTCCATGTGAACCGAAAGCTACGCGAGTTAAAACGCATCATGTCTTGGGTTCCTCTACACTAAGTAGTTTCTTCACATGCTGTTCACGCTTGTTCACTATTCTGTCAGAGTAGATCGGTCCAAGGTTGACGATATGTAAGGGTTACAATCTATGATCGGTCCTTTCTTAACCCAACAGACTGTTTGCGTCTGTGTTTGTTCAATTTTACCTCTCAGAAGGTAACAGTTTTATAAAGCTCATTTTGGAAGATTTTTCAACTACAATTTCATAGAAAAGTATTTCAATATTAGAGGGTGAGCACccaatattttctttctttagtttttatttttgtacattagcACCCGGGTATTAGCAATGTAGACAAACTGTGATCTTGTCATTCTTGGCTGTCAaatatgaatcaaataaaattatttacgGAAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0030145 manganese ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04461 PPM1B, PP2CB; protein phosphatase 1B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250656.1 lncRNA downstream 62343 16908209 ~ 16924965 (-) False LOC122342882
XR_006250657.1 lncRNA downstream 62343 16915322 ~ 16924965 (-) True LOC122342882
TU43019 lncRNA downstream 285637 16701068 ~ 16701671 (-) True G29021
TU43009 lncRNA downstream 377309 16609636 ~ 16609999 (-) True G29012
XR_006250612.1 lncRNA downstream 436304 16550333 ~ 16551004 (-) True LOC122342602
TU43183 lncRNA upstream 45463 17038827 ~ 17040834 (-) True G29143
TU43231 lncRNA upstream 225787 17219151 ~ 17219453 (-) True G29179
TU43271 lncRNA upstream 355925 17349289 ~ 17349506 (-) True G29212
TU43360 lncRNA upstream 560398 17553762 ~ 17553964 (-) True G29273
TU43543 lncRNA upstream 649015 17642379 ~ 17642637 (-) True G29388
XM_043237667.1 mRNA downstream 29234 16955520 ~ 16958074 (-) True six6b
XM_043237030.1 mRNA downstream 87015 16886153 ~ 16900293 (-) False prkchb
XM_043237577.1 mRNA downstream 105913 16868461 ~ 16881395 (-) True hif1ab
XM_043237578.1 mRNA downstream 108053 16868461 ~ 16879255 (-) False hif1ab
XM_043237581.1 mRNA downstream 119323 16864505 ~ 16867985 (-) False snapc1a
XM_043238042.1 mRNA upstream 92098 17085462 ~ 17089500 (-) True ckbb
XM_043238043.1 mRNA upstream 92098 17085462 ~ 17089478 (-) False ckbb
XM_043236669.1 mRNA upstream 124979 17118343 ~ 17122117 (-) False xrcc3
XM_043236668.1 mRNA upstream 124979 17118343 ~ 17122116 (-) False xrcc3
XM_043236664.1 mRNA upstream 130543 17123907 ~ 17130265 (-) True LOC122342663
XR_006250655.1 other downstream 87013 16886974 ~ 16900295 (-) True prkchb
TU43020 other downstream 278348 16707774 ~ 16708960 (-) True G29022
XR_006250870.1 other downstream 966746 16020444 ~ 16020562 (-) True LOC122343883
XR_006250906.1 other downstream 967149 16020041 ~ 16020159 (-) True LOC122343926
XR_006250859.1 other downstream 969133 16018057 ~ 16018175 (-) True LOC122343872
TU43174 other upstream 13563 17006927 ~ 17017823 (-) True G29135
TU43209 other upstream 125264 17118628 ~ 17122129 (-) True xrcc3
TU43541 other upstream 643795 17637159 ~ 17638709 (-) False srd5a3
TU43577 other upstream 741986 17735350 ~ 17736274 (-) True G29417
TU43653 other upstream 977241 17970605 ~ 17979922 (-) True G29473

Expression Profile