RNA id: XM_043236875.1


Basic Information

Item Value
RNA id XM_043236875.1
length 1883
RNA type mRNA
GC content 0.48
exon number 5
gene id slc35e3
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 12014586 ~ 12018965 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACACGTCCCTCATTCGCGAGCGTCACGTCGCGTTTGTATGCGTCACGCGCGTGCGTTCAGTCAGCGGTTTGAGTGAATGCGGCTCTCTGTGCGGGACAGCCTTATAATGAACGCTGCAAACCGCTTTCGCGCACTCAGTCACGGGACGCGGTGGAACTTTACGTCCCTCTGCCGATGAAGTGCCAAAGCGGCCCCCCGAAACTCTTCCTCCAGCTGTATTTGCCTCTAAAAGCGCGTCTGAATTAGCTCGGCCATGGCGACGCGGCTCTCGGACTTGTTTGGAAACAGCCGGATAGTTGCTGGGCTGCTGGTCAACTTGCTGTCGTCGATCTGTATAGTGTTCATCAACAAATGGATCTACGTGCACTACGGCTTTCCCAACATGACCCTGACGCTCATTCATTTCGTCGTGACATGGCTGGGGTTGTTCGCGTGCCAGAAGATGGACGTGTTCTCCCCCAAGAGTCTCAGACCTTCGAAAATCGTCCTGCTGGCGCTGAGCTTCTGCGGGTTCGTGGTTTTCACCAACCTGTCTCTCCAGAGCAACACGATAGGAACCTATCAGCTGGCCAAGGCCATGACAACACCCGTGATCATAGTCATCCAGACCGTGTACTACAGGAAGACGTTTTCCCCGAAGATTAAACTGACTCTGgtGCCGATCACTTTAGGGGTGATACTGAACTCTTACTATGATGTGAAGTTCAATCTTCTGGGGATGATCTTTGCCACGCTCGGGGTCTTCGTAACCTCGCTGTATCAAGTGTGGGTTGGCGCCAAGCAGCACGAGCTCCAGGTGAACTCTATGCAGTTGCTGTATTATCAAGCACCCATGTCTTCAGCATTTCTCTTGGTCCTGGTGCCTTTCTTCGAACCCCTGACCGGAGAGGGCGGTATCTTCGGCCCCTGGTCCTTTCAGGCCCTGGTCATGGTTCTGCTGTCTGGTGTTATTGCCTTTCTGGTCAATCTGTCCATTTACTGGATCATTGGGAACACGTCCGCTGTCACCTACAACATGTTCGGACACTTCAAGTTCTGCATCACGTTGCTGGGCGGGTACGTCCTCTTTCAGGACCCCTTGTCCTTAAACCAAGGTCTGGGCATCCTCTGCACCCTCAGTGGCATCCTGGCGTACACCCATTTCAAACTGGCAGAGCAGGAGGAGGGCAAGAGCAGGCTCACGCAGAGGCCGTAGGAAGCCAGCGTTCTTCAGGAACAGGCAGCGATGAAGAAGACTTAACCAAACACAGACTGGAAGGAATCGGAGGCCTCGATCATGGCATTTCAATCTTTTTAAGAGTTCCATTTTTATTCCAAGCATTcgatatttgcaaaaaaaaaaaaagaaaagtgctgTTTGAGAGAACacctattttctttttcttttttttttactttgtaagTGTTATTTAATGATGTATTTTTCGAACGGTctgtacaaaaataaagcattttatagAAAGTAGCCCGTGAACGGAATCTAATCTTGTATTGAGTCTCGTCGTGACTTTTAGGACAAGGGTCACTGCCTGCTTGGCAAACAGACTTGAGTATCTGTGAAATGGTATGTCGGTCATTCGTTGAGTTCGTGATGAGGGCTTTTCAGCTTGTTTTCCTCTTTTGCAACGAGCCGCTTAAACATCAGTCACATTCCAAAGTCCTGTCTCCAGACCAAGTCTAGATGTTTTGCGGCTTTGGTGTGATTTTTACTCATTTTGAAAAGGATGTGGTAAACAGATGCTGCCGTTTGTGCCTCTTAAAGACGCGTTTCGCTCAAAAACCACCTGTTTCATGTAACATATGTTTtgaatttctaaaatgttttattcccCATGCAATTAAATTTGACATCCCTTGAATTGGAAGGAGACTTCTTGTCTCA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15285 SLC35E3; solute carrier family 35, member E3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41608 lncRNA upstream 22702 11989871 ~ 11991884 (+) True LOC122342766
XR_006250646.1 lncRNA upstream 23162 11989881 ~ 11991424 (+) False LOC122342766
TU41607 lncRNA upstream 28400 11985352 ~ 11986186 (+) True G28077
TU41311 lncRNA upstream 199281 11803132 ~ 11815305 (+) False gnai1
TU41298 lncRNA upstream 228734 11752668 ~ 11785852 (+) True G27862
TU41651 lncRNA downstream 138 12019103 ~ 12019422 (+) True G28094
TU41652 lncRNA downstream 531 12019496 ~ 12019766 (+) True G28095
TU41663 lncRNA downstream 129173 12148138 ~ 12155255 (+) True G28104
XR_006250793.1 lncRNA downstream 318980 12337945 ~ 12340101 (+) True LOC122343506
XR_006250638.1 lncRNA downstream 441721 12460686 ~ 12462227 (+) True LOC122342723
XM_043236689.1 mRNA upstream 199281 11796982 ~ 11815305 (+) True gnai1
XM_043236998.1 mRNA upstream 230779 11740732 ~ 11783807 (+) True sema3c
XM_043237652.1 mRNA upstream 323470 11689320 ~ 11691116 (+) False ndufb2
XM_043237654.1 mRNA upstream 323470 11689320 ~ 11691116 (+) False ndufb2
XM_043237648.1 mRNA upstream 361828 11618061 ~ 11652758 (+) True lhfpl3
XM_043236873.1 mRNA downstream 1656 12020621 ~ 12027468 (+) False mdm2
XM_043236874.1 mRNA downstream 2600 12021565 ~ 12027468 (+) True mdm2
XM_043236993.1 mRNA downstream 54738 12073703 ~ 12147286 (+) True LOC122342854
XM_043236899.1 mRNA downstream 151162 12170127 ~ 12267756 (+) True LOC122342787
XM_043236344.1 mRNA downstream 1131771 13150736 ~ 13154352 (+) False kin
TU41253 other upstream 323457 11689314 ~ 11691129 (+) True ndufb2
TU41254 other upstream 323457 11689314 ~ 11691129 (+) False ndufb2
XR_006250736.1 other upstream 598359 11386130 ~ 11416227 (+) False acss3
XR_006250737.1 other upstream 598359 11386130 ~ 11416227 (+) False acss3
TU41106 other upstream 1305714 10707639 ~ 10708872 (+) False LOC122342850
TU41815 other downstream 1131791 13150756 ~ 13154358 (+) True kin
TU41889 other downstream 1286704 13305669 ~ 13315684 (+) False G28252
TU41890 other downstream 1286704 13305669 ~ 13315684 (+) True G28252
TU41888 other downstream 1294903 13313868 ~ 13315684 (+) False G28252
TU41881 other downstream 1304323 13323288 ~ 13530631 (+) True G28249

Expression Profile