RNA id: XR_006250650.1


Basic Information

Item Value
RNA id XR_006250650.1
length 4603
RNA type transcript
GC content 0.42
exon number 20
gene id zgc:113263
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1609360 ~ 1618298 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGGTGGCCCAGCAAAACTAGTATAATGTGGTTTTGCACCACCAGAGGGAGAACTCGAATTACACTGTAGACCAGACCAAAGCGGATTAGACCGGAATCTGTGTCGTTCAGTCCAGTGTTTTGAAACGAACGAAATGATCATGTGGGAAGAGCATCGAAATTAAAAAGTATCTCGTCTGATAGCTGATTTCTTCTGAATTATGATAcacagctgctgaaaattttaatttcgaGACTGTTTAAAGTTGATTGAAGTTGTAAACAATGGAAGCGCTTTGGAGCAAGAAAATCGAAGACCCTCTTTCATTGATGAGTTTCATTATTCCACCGTCGAGGTTACTCTCTGCAGCCATGTGGCAGGTGACTGAACAGAGACAGGTGAAGCACTATGGGATGCTGGAGGAGTTTGTAACCATGGTGACAGAGAGCGTGCCAGAGCTTCTAAATTACAATCAAAGAACCCAATTGATATTTGATTTAAGAGCAAGGCATCTTCTGGAGTTGTGTCGTGTTAAACGTCAGGTCAACCTGGAACACATTCAGATGTACCTCGATCGAATCCGTGCTCCTCGTGTCAATGAGGTGGTTCATGAAGAAATGGAGGAATCTGAGGCCTGTTTCTTAGACCTTATTCAAACCCTTATTAGCAACCCTGAAGAGAGAGAGCATTTCTTTCAGAACATCTTCCCAGAGGAATATGGCCCCAAGTTTGACAAAAACCTAAAGACACGTATGGAAGCCTTCCTCTTGCAGTTTGATCGAATGATGTCAGTCCCAGACCTTTCACAGACTGTGTCTTGGTTCAGGACCTGCCCGTCTCTTCTGGACGAATGTCTTCGTTCGGTTTTTGTCCCAAAGCAGATGAAGACCCTTCTTGAACATCACAGAGCTAATAAAAGTCTTCAGGACAATGAGTCTCTTCACTCTGCTCATAACGGCTGTACATTTTCATCTCAGTCTCTCCCTCCACTGGTCCGAGTCGTTATTTCCAGCGATCACACAGAATCTGGCGACCTGTCTGAATCAGGAGCCGATGTAGATGGACAAGACAAAGATGATTGCCACACTTCTAAAACCTTGTCTGATCCTGATACGTCCTGCTGGACAACTAAGAAGAGAAAATTCAAAgtagagacagaggagagagagaatgaagaggaggaggatgatgataAGAATTGGCCAATCACAGGTGCCCGATATAGAGAAAAGCTTGACAGCTTTTTTGGCGAAGAGCTGAATCagacacacaccaaaaaaatctctaaaaaatcctctaaaaagaaaagagacgACAGCACAGACGTGTCTGGAGAGTTCACATTTATCAATCATTTGGGTGCATACACAGAAGAGTCTTCCTACCAGACCTCTGATGCTTCAAAAGTCCCTTGGTCAGAGGAAGAAACGTTCAGCCTCATTGACATATGGGGGAAAGACAGCGTCCAGCGGAGTCTAAAAGACTGCGCCCGTAATCGACACATATTCAACCTCATCTCAAAGAAGATGTTTGAGAGAGGCTTTACCAGAACTGCAGAGCAGTGCCACACCAGGATAAAACgcttgaaaatgagctttcggCAATGCCATGAAAACATcaGTATGAAAGGAGAGAAACCGGAATGGAAGTTCTATAATGTGCTGGAGAAAATTCTGTGCCAGAAAGAATCTACAGAACAGGAAGACACTCTTACTGATGTCAGCATTCCTGAAGAGTCCACAGGACAACCGGCAGAAGATGACACTGAATGGGATGTCCTTGGCCATGTCGGGCTAGAGGGCACAAGAAATATCCCATGGACAGATCAGGAAACACAAACACTCATCAGGATCTGGGGAGAGGACAAAACCCAGCGAGAGCTAAGGGGGGTTCTTCAGAATGGACACATCTTTGCCATGATTTCAAAAAAGATGGCCACTCATGGCTACATCCGAACTGCAGAGCAGTGTCAGAGTCGAGTGAAAAGACTGAAGCTGTGCTTCAAACAGTCTTACGAGAGTAAACACATTGAAGGCAAAGAGCCAGTTGAATTTAAATTCTATAAACAGATGGAGAGAATTATGGCAAATGAAGAACCATGCTCATCACAGATCAAAGAGGAGGAGTCAACGGACATTGAATATCAGGTGTACAAATACCAGGAAATAGAAACGGCAATGAACTGCATTGACGATAGAAAGAAGGTGGCCTGGTCCGATGCCGAAACACTGATTCTTCTCCAGTTATGGGGCAATGAACAAGTCCAGCAGAACCTTCAACGTTGCCCTCACAATGGCCACATCTACTCGGAGATCTCAGAGAAACTGAATGCTCATGGATACCTGCGATCCGCTGAGCAATGCCACACCAGAATCAAACGACTTAAAATCAGCTACAGGCAGTGCAGGGACAGCATGAGTTCACCTGCAGCTGAACGTGTAGAATTTAAGTTCTATGATCTGATGGAGGACATTTTTCAGAGGAATGCTTCTTCTAAAGGGTCAGGAGATAATGAATCCAGTAAAGGCATAAAATTAGAATCTCAGGACACTTGCAATAGTGTGGACCAGACAACATCTTGGTCAGACTCTGAAACTACAGCTCTAATAGATATTTGGGCAGAAAATGAGATGCAGGAAGCCCTGAGAGGAACCGTCCATAACATCCACGTCTTTACTGATATAGCAGAGAAACTGAACAATCAGGGATTTTTCAAAACACCAGAACAATGCAGGTGGAAGATAAAGAACCTGACAAAAAATTTCAGACAGTGTTATGAATGGAAAAAATGTGGCATAGAGAAAGTAGATTGCAAGTTCTATGATAAACTGGAGCATGTTCTGGGTGATGAGACCTTTCCCACGGATGTCTATGATGAAGATGATCAAGATGCAGAATGCCAGCAAGCAGCCATGGTAGCTGTATCTGAGTCTGGCAGGAAGATGACCTGGTCAGATCGGGAGACACAGGCCCTGCTGGACATCTGGGGTGATGACCGTGTGCAGCACAGCCTCATGTCCTGCCCGAAAAACAGGCACATATACAGATACATTTCAAAAAGAATGATGGCGCTGGGTTTCAACCGAACAGGTGTGCAGTGCCACTCTCGTGTGAAGAGACTCAAGTCCCAGTTTTATTATGATGGCAGGGAGGAGTGTAAATTTTATGATCAGCTGGAACAGATTATTTTAAAGGACCGAACATCTGAAGGTCAGGACATCAGTGAGCTGGAATCCATAACAGATTCTGATTCAGACTCTCTTGCTCTCTCCAAACCTCTCACTACGGATGGACCGAAGCTGGCATGGGGTGACAGTGAGACACACACTCTTATATCCATCTGGGGTAGCGATACCATCCAGGAAAGGCTGAAGGGCTGCGTCAAACGCAAACCTGTTTTCCAGCAGATCTCAGTGGTCATGGCAGAGAAGGGTTACAGCAGAACAGACGAACAGTGTCGCTCCAGGATCAAAAGACTGAAAGCCAGTTACCGCCAGTGCTTGGACAATTACAGATGATGCTGAAACCACCACAGCTCAGGAGCCAGAGGCAGTTGGGAGAAAAAACCCTAACAGATCTGCAAAAGTTCAGTCTGACTAAGCAACACTAGTCTGGATGGGTGAGAACCGTATTCTCCTGGTTGTCCGGGCTGAGAAATATAAACCAGATCGGACTGAGGTACTTTCTGTCATGTGGAGTGAAGAGGATGGTCACACACAGACCTTTACTTGGCGGAATTCTAAGCTTGTCACTGAAAAATCCAACACTTCCACTAACAAGTAACAGAAATACAGTacgttatttgtttatttggtaCTGTATTATGTTAATTTGTATTAGCTCTTCTGTACATCTGAAAGACATTTGCCCAGTGGTGCTGTTTTCGATGTGGCCTGAGTTGATGTTTTCATAGGATAAATTTTAACAgtgaatttaaatgtgtgtcTCAGCTGCCTAGCAGCTTGCATAAAGCATGTGAGATGGATGAATTTGCCAATTGTCTACTGAAAAACACAAGCTCCTTACAACCTCAAAGTGACTCAAGTAACAGAAAATAGAAGAACCAAGTCTGAACTTGTAGCAAAGTTCgttcattgtaaaaaaaaaaaaaaaaaaaaaaagaaaaagaaatcgcGTTGGAACAATAGAATAACTGGAGGGAATTTAGCAAATCCTTTTCTTTCTAGTGCagaaaaaatagagaaaatggatttaaattgtatatttgtatcataaaaagaaacatttgtgcTACAtggagaaaacactgaaaagaatttccattttgtacaaaagcattaacttttaaagtatatttgcTAGATTTaacaaaatttaatatatacattatacaaatGTAAGTTACTGTTACACAGGATGATGCCAAAGCTCACTGCTCAAATCTCAATCTCTTTTTAAGagtatataatttgtattgGCATGAgccaaataataaattaatttgacatCCAGTCAGAATTGGTACAGGAATTGTGTACACAAAACCAAACAGCATTATTCAGTGATGGTGAAAAAATGGACAGTATAGATGTTACAGTGAGATCCAGTGTTACTAATTTTTTTGAAGTggacaaataaaatttgttttatttttgagtggT

Function

GO:

id name namespace
GO:0005515 protein binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37323 lncRNA downstream 14072 1594720 ~ 1595288 (-) False selenoo2
TU37317 lncRNA downstream 26746 1580480 ~ 1582614 (-) False LOC122342802
TU37318 lncRNA downstream 31635 1577201 ~ 1577725 (-) True G25098
TU37229 lncRNA downstream 32644 1576061 ~ 1576716 (-) True G25028
TU37228 lncRNA downstream 33941 1570293 ~ 1575419 (-) True G25027
TU37348 lncRNA upstream 42307 1660605 ~ 1661388 (-) True G25124
TU37349 lncRNA upstream 44047 1662345 ~ 1662607 (-) True G25125
TU37350 lncRNA upstream 44775 1663073 ~ 1663900 (-) True G25126
TU37351 lncRNA upstream 47540 1665838 ~ 1666137 (-) True G25127
TU37364 lncRNA upstream 70060 1688358 ~ 1688894 (-) True G25133
XM_043236890.1 mRNA downstream 4670 1594284 ~ 1604690 (-) True selenoo2
XM_043236891.1 mRNA downstream 5647 1601675 ~ 1603713 (-) True LOC122342781
XM_043236889.1 mRNA downstream 8756 1594284 ~ 1600604 (-) False selenoo2
XM_043237040.1 mRNA downstream 15991 1591389 ~ 1593369 (-) True LOC122342889
XM_043237039.1 mRNA downstream 18055 1588279 ~ 1591305 (-) False LOC122342888
XM_043236315.1 mRNA upstream 679 1618977 ~ 1621881 (-) False apex1
XM_043236314.1 mRNA upstream 679 1618977 ~ 1621859 (-) True apex1
XM_043236317.1 mRNA upstream 6997 1625295 ~ 1628655 (-) True si:ch211-214j24.10
XM_043236318.1 mRNA upstream 35300 1653598 ~ 1654826 (-) True ccdc167
XM_043236298.1 mRNA upstream 36738 1655036 ~ 1658265 (-) True si:ch211-214j24.14
TU37001 other downstream 539264 1069160 ~ 1070096 (-) True G24875
TU36940 other downstream 676252 908946 ~ 933108 (-) False pik3cg
TU36783 other downstream 1418118 186460 ~ 191242 (-) True G24708
TU36763 other downstream 1535874 56637 ~ 73486 (-) False si:dkey-97m3.1
TU36762 other downstream 1575444 28072 ~ 33916 (-) False LOC122343420
TU37319 other upstream 35293 1653591 ~ 1654807 (-) False ccdc167
TU37444 other upstream 283545 1901843 ~ 1902567 (-) False rsph9
XR_006250653.1 other upstream 424655 2042953 ~ 2088579 (-) True cald1a
XR_006250644.1 other upstream 684029 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other upstream 686048 2304346 ~ 2375716 (-) False dock4b

Expression Profile