RNA id: XM_043236895.1


Basic Information

Item Value
RNA id XM_043236895.1
length 2595
RNA type mRNA
GC content 0.41
exon number 12
gene id si:ch73-352p4.8
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1973274 ~ 1979290 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCCCAGAACATTAGTCAAAGTTCTGAGAATGTTCAGTGCTAGCTGGGAAAGATTCTTTATAGTGGGTAATGTTCTTTGgatttttcaaatgttcttcACTCTGAGAAGAAATACTCATTTTGTTTCGTTCACTCAAAGATCTAAAGCTGCAACTGAGAGATGATGGTCACTAAAAGAGAGTCGGCCCCTGACAAAGCATCAGATGAAGATACGGAAAAGACAGTGAAAGACGATGCAGTTCATCTCAGGAGGAGGATAGGCCTGCTGCCGTCTGTTTGCTTCATCATCGGCACTGTGGTGGGCAGCGGTATCTTCATCGCCCCCAAAGGCGTGTTGATGAATTCGGGCAGCGTGGGATTGTCCCTGCTGGTCTGGACTCTGTGTGGCGTCCTCTCCACTTTTGGTGCTTTATGCTATGCTGAACTGGGCACGAGTTTTAGAAAATCAGGCGGTCATTACACTTACCTGTTGGAGACCCTGGGGCCCCTGCCTGCCTTCCTGAGACTGTGGACGGAGCTCATTTTCatcagGCCTGCAGTGGCCACATACGTGTCTTTAGCTTTTGGCCAGTATGTAGTGGAGCCATTATTCATGCCTTGCGCCGCTCCGACGGCCCTGGTCAAACTCGTCAGCATGCTGGGAGTCACGTTTGTGGTGGCAGTGAACTGCTGGAGTGTGTCAATGGCAGCTCGTACACAGGTCTTGCTGACCTTCATCAAGATGTTTGCTCTGATTCTGATCATCATCCCAGGCATCATGGCTCTGGCTAATGgAAAAACCGAAAACTTCCAGAATGCCTTTGTCTCAGATTCTGTGGCTCTGACCAAACTGCCTCTGGCCTTTTATTCAGGTCTTTATGCATATGGTGGATGGTGGGTATTAGCAGCAGTGTCAAACGTATACAAATCTAAAGGAAGTTATTtccaaaataatgtaaatgtgtttatttctgcttacaggttttatttaaattttataactGAAGAGGTAATTAATCCAAACAGAACCATCCCATTGGCCATCGTTTTCTCTATGGTGACTGTAACTGTGTTTTATGTGCTGGTCAATGTGGCTTACTACACCATGATGAGCGCCAATGAGTTACTGATGTCAGATGCAGTGGCAGTGACATTTGCAAGTCGGGCTCTGCAGAGTGTAGCACCAGCAATACCAGTTTTAGTCTCTCTTTCCTGCCTTGGAGCACTTAATGGAGGATTTTTTGGTTCACCTAGGATGTTGTTTGTGGGCGCCAGAGAGGGTCACTTACCCAGTATCTTCTCCATGATCCATATCCGCAGACAAACCCCGCTGCCAGCTGTGATGTGTTTGTATCCTCTGGTGATCATCATGATGGCGAGAGGAGAGATCTTTCAACTGATCAATTTTGCATCCTTTTCCCGTTGGCTCTTTATCGCATTGGCCACTTTGGGAATGATCATCCACCGCTACAGATTTCCAAATCATCCCAGACCATTCAAGGTCCCTCTTGCAGTTGCGGTGATCTTTACCATAGTATGTTTCTTCATCGTGGGCCTGTCCCTGTATTCGGACCCCTGGAATACGGGAGGCAGCTGTGCGCTCACATTATCAGGAGTACCAGTGTATTACCTGACTGTCAAGAAGTCATACATACCCAAACGCTGGAAAAAAGCCTTCAATTATTTAAGTCTACATCTGCAGATATTCCTGGAAGTGGCTCAGCAGGAAGTTAAGACCTACTGATGGAGCTTCACCAAACTACAGACCTGAGTGTTGCAAAGGGCATTGAAGTTTGTTTTAATGGCATACGCAGAGCAACATCCTTGCACCCTATCCATTAGTTCAGGCATCACTCGTATTTTCATctagtttttattcaaatctaATACAGGACTATGTCCTGGTAAAGTCATTctttaaaagggatagttcattaaaaaaattatattctgttATAATTTACTGGCTTCGGTTAATCTCCAAAACATAACCAGTCctaaaatgaattcatattaATCAAGTAATCACAATGTGTTTGTATAAAGTATCCCTTTATTCTCAAAAAGTACATTAAGAAGAGAAACCAAATTGTATTCtttgttgaaaatgaaaatggatgTTTCTGGTTAAAGCCTGTTACATGAGTAAAATGCAGAGCTGATTACTTTCATATTTCAATAGTCTtcaaaaattatacaaaagatATCCTATTGTCTGAATGGCCAGTTTTTTTGACTCaccaaaatgtttgttgttgagAAACATTAAAGTTGATTATTACATAACTTTGTATTCTTACAGAAACCAAATATCAAGTCACTTGAcagctttttaaatgtctgtgcATCAATGTAATACAATAAGTAAATGCTACTTAATTTGTGTAACTAATGCTTGCGTAACGTTTTAGCACCAAAAATCTGTCAACCGTtcagtttttgtacatttttttgatatCTTGCTGTTTTTACATTGGAAGAATGCAATACAATGTATCAAATGAACAAAGCTACATATTGATGGTAGTCTTCTAAGCATATATGAACTCTGTGCATGCTCACTAATCATTCTACatatgaaaatgaacattaaaagcTTTGTAATACACCACAAA

Function

GO: NA

KEGG:

id description
K03294 TC.APA; basic amino acid/polyamine antiporter, APA family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37451 lncRNA upstream 64778 1907200 ~ 1908927 (+) True G25193
TU37447 lncRNA upstream 67599 1905830 ~ 1906106 (+) True G25192
XR_006250555.1 lncRNA upstream 71819 1899896 ~ 1901886 (+) True LOC122342405
TU37306 lncRNA upstream 142737 1830678 ~ 1830968 (+) True G25086
TU37231 lncRNA upstream 184429 1788631 ~ 1789276 (+) True G25030
TU37517 lncRNA downstream 15018 1994308 ~ 1995523 (+) False lyrm5a
XR_006250654.1 lncRNA downstream 49506 2028796 ~ 2033049 (+) True LOC122342875
TU37535 lncRNA downstream 49514 2028804 ~ 2032064 (+) False LOC122342875
TU37531 lncRNA downstream 69934 2049224 ~ 2050952 (+) True G25249
TU37589 lncRNA downstream 127473 2106763 ~ 2107094 (+) True G25288
XM_043236898.1 mRNA upstream 8170 1960862 ~ 1965535 (+) True ngs
XM_043236186.1 mRNA upstream 28108 1940742 ~ 1945597 (+) True pou3f2a
XM_043236175.1 mRNA upstream 75448 1896161 ~ 1898257 (+) True mrps18a
XM_043236337.1 mRNA upstream 148643 1823635 ~ 1825062 (+) True LOC122342504
XM_043236242.1 mRNA upstream 150955 1818023 ~ 1822750 (+) True mapk12b
XM_043237921.1 mRNA downstream 6278 1985568 ~ 1987174 (+) True rhno1
XM_043237920.1 mRNA downstream 8186 1987476 ~ 1989937 (+) True pex26
XM_043238038.1 mRNA downstream 11215 1990505 ~ 1993588 (+) False usp18
XM_043238036.1 mRNA downstream 11218 1990508 ~ 1993588 (+) True usp18
XM_043238037.1 mRNA downstream 11218 1990508 ~ 1993588 (+) False usp18
TU37230 other upstream 185609 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 300746 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 682481 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 1308175 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1599623 373527 ~ 374082 (+) True G24632
TU37871 other downstream 1136218 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1140239 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1459841 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 1461622 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 1467768 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile