RNA id: XM_043236901.1


Basic Information

Item Value
RNA id XM_043236901.1
length 2692
RNA type mRNA
GC content 0.51
exon number 22
gene id cog5
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 383479 ~ 449062 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGATGTTTGTCACGATGACGTCAGTCGagctcattaatattcatgaccAATCGCCGTTGCTCTCCATTCATGTTGTGACGCAGGAATTGCGCGTCACCGATGAAGTGGCAAAGATGGACGCCAGTCCGGAATCAACAGCGAATTCCCTGCTGAAAGATgAGTGCTTTACGGACTTCCTTAAAGAGGATTTCGACGTGAAGACCTACACAGCTCAAGCCATCCATCACGCTGTCATCGCAGAACAGCTGGCGAAGCTGGCAGAGGGCATCAGTCAGCTGGACAAAGAGCTGCACTGCCAGGTGGTGGCCAGACATGAGGATCTACTAGCTCAGGCGACAGGGATCGAATCTCTCGAAGGTGTCTTACAAATGATGCAGACCAGAATTGCAGCTCTCCAGAGTGCTGTGGACAGgATACGGACCAAAATCGTTGACCCTTACAATAAGATTGTGGCCCGGACAGCCCAGCTCGCCCGCTTGCagGTGGCGTGTGACCTGTTGAGAAGAATCATTCGCATCCTGTACCTGAGCAAACGACTGCAGGGGCAGCTGCAGGGGGGCAGCAGAGAGATCACTAAAGCGGCCCAGAGCCTGAACGAGCTGGACTACCTGTCCCAAGGTGTTGATCTGTCAGGTATTGACGTCATAGAAAATGACCTGCTGTTCATCAGCCGAGCTCGTCTGGAGGTTGAGAACCAAGCCAAGCGCTTACTGGAACAGGGCATGGAAATtcagAATCCCTCTCAGGTGGGAACAGCCCTACAGGTGTTTTACAACCTTGGCAATCTGAGAGAGACTATAAGAAGTGTAGTGCATGGATACAGGACATCTGTGCAGGAGAATGTTGTTAATGCCCTGGACATTAAAGTCCTAACTCAACCTGCTAACACTAGAGGTGCCCCTGGAAGAGCTGTCATGCCCACCCCAGGGAATACAGCTGCGTTTCGAGCTGCCCTTTGGACAAATTTAGAGAAACTAATGGACCAGATCTGTGCAGCGTGTGGTCAGGTGCAGCACCTGCAGAAGGTTCTAACCAAAAAGAGGGACCCAGTGTCTCATGTCTGCTTTATTGATGAAATAATCAAGGATGGGCAGCCTGACATCTTGCACACCTTCTGGAGTTCAGTCACTCAGACGCTCTCCGAGGAGCTGCAGAAAGCCACAGCTGCATCAACCTTCCTGAAGCAGGCTCTGGAGGGAGAGTATCCCAAACTCTTGAGGCTTTATAATGAGCTATGGAAGAGGCTGCAGCAGTACAGCGCTAGCATACAGGGGGCGCTAGTGAGTAGTGGTGCAGGTCTTGATGTTGAACTGCCAGTGTCAGAGCATGATACTGAAGATTTGTTCACCCGGACCAAACCAGACTATGAtCCAGAGAAAGACCTAAAGGACTCCCTTCAGCCATATGAAGCAGCTTACCTGTCCAAGTCTCTGTCCCGTCTCTTTGACCCCATCAATCTTGTGTTCCCTCAAGGCGGCCGAAACCCACCCTCTAATGATGAACTTGATAGCATCATAAAAACAATAGCCAGTGAGCTGAATGTTGCATCAGTGGATTCCGGCCTGACGATCGCAGTCGCCAAGAACGCCGCCAAGACCGTGCAGCTTTTCTGCGTCAAGTCAGAGCAGTTgCTGTGTACACAAGGAGATGCCAGTCAGGTGATCGGACCCCTGACGGAGGGTCAGAGAAGAAACATTGCTGTAGTCAACTCTCTTTTCCGCCTGCAGCAAGCTGTGGCTAAAGTTATATCTGGACTGGGTACCTTCCCTCCTGCAGCAGAGCAATCGCTCACAGCTTCTTTAGagTCGGTTCAGGCTCTGATGAGTAGCGCCGTTCAGCCACTGCTAAATTCCGTTACTGACTCTGTCGAAGCAATACTCATTACAATGCACCAGGAGGATTTCTCTGGTCCTTTACCCGCAGGTGGTCGTCCGGACGTGCCGTGCTCTCTGTACATGCGTGAGCTGCAGGGCTTCATTGCACGAGTGATGAACGACTACTTCCGCCCACTGCAGTGTCTGGACTTCCTTTATGATAGTACAGAGATCATTGCCCAGCGTGCCATCACCCTCTTCATCCGCCACTCTAGCCTCTTGCGGCCACTCGGAGAGGGAGGGAAGATGAGGTTGGCAGCTGACTTTGCTCAGATGGAGCTGGCCGTGGCTCCTCTCTGCAGACGGGTTTCAGACCTGGGGAAAGCGTACCGTCTCTTGCGGTCTTTTAGACCGCTGCTGTTTCAAACGAGTGAGCACATCGCTAGCAGTCAAGCGCTGGGAGATTTGATTCCGTACAGCACCATATTGCATTTCCTGTTCACTCGTGCCCCGGCTGAACTCAAATCACCACATCAgAGAGCGGAGTGGTCTATCTCTCGCTATTCTCAATGGCTGGACGACCATCCATCAGAAAAGGACCGTCTCACTCTTATTAGGGGGGCGCTGGAGGCATATGTGCAGTCTGTCCGAGCCAGGCAGGGGAAGGAGTTTGCTCCGGTGTATCCCATCATGCTCCAGCTGCTGCAGAAAGCCACGAGCATCTCGTAGGATCTGCAAACAGAGCCCCGTCTCATCACCATAATGTAGACGAGTTCGCCATAACAATACACAAAGAAGtctttattaaacttaattacgttataataattttgttgaagtcaaaaatgaatgtgtataggtttattatgtattttt

Function

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0017119 Golgi transport complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36792 lncRNA downstream 101627 279998 ~ 281987 (-) False osbpl8
TU36803 lncRNA downstream 170368 212605 ~ 213246 (-) True G24724
TU36802 lncRNA downstream 170465 212605 ~ 213149 (-) False G24724
TU36801 lncRNA downstream 170515 212605 ~ 213099 (-) False G24724
TU36787 lncRNA downstream 174794 205893 ~ 208820 (-) True G24712
TU36884 lncRNA upstream 155821 604883 ~ 605114 (-) True G24792
TU36887 lncRNA upstream 163329 612391 ~ 612843 (-) True G24795
TU36888 lncRNA upstream 164065 613127 ~ 613653 (-) True G24796
TU36891 lncRNA upstream 171115 620177 ~ 620588 (-) True G24799
TU36894 lncRNA upstream 174267 623329 ~ 624257 (-) True G24802
XM_043236904.1 mRNA downstream 288 371870 ~ 383326 (-) False e2f7
XM_043236903.1 mRNA downstream 288 371870 ~ 383326 (-) True e2f7
XM_043236782.1 mRNA downstream 14191 360167 ~ 369423 (-) True csrp2
XM_043236598.1 mRNA downstream 77760 281721 ~ 305854 (-) False osbpl8
XM_043236909.1 mRNA upstream 14977 464039 ~ 496868 (-) False slco1c1
XM_043236908.1 mRNA upstream 14977 464039 ~ 496719 (-) False slco1c1
XM_043236907.1 mRNA upstream 14977 464039 ~ 494632 (-) False slco1c1
XM_043236910.1 mRNA upstream 14977 464039 ~ 493241 (-) False slco1c1
XM_043236905.1 mRNA upstream 14977 464039 ~ 493238 (-) True slco1c1
TU36783 other downstream 192372 186460 ~ 191242 (-) True G24708
TU36763 other downstream 310128 56637 ~ 73486 (-) False si:dkey-97m3.1
TU36762 other downstream 349698 28072 ~ 33916 (-) False LOC122343420
TU36754 other downstream 372513 10833 ~ 11101 (-) True G24689
TU36940 other upstream 459884 908946 ~ 933108 (-) False pik3cg
TU37001 other upstream 620098 1069160 ~ 1070096 (-) True G24875
XR_006250650.1 other upstream 1160298 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other upstream 1160298 1609360 ~ 1618298 (-) False zgc:113263
TU37319 other upstream 1204529 1653591 ~ 1654807 (-) False ccdc167

Expression Profile