RNA id: XM_043236930.1


Basic Information

Item Value
RNA id XM_043236930.1
length 6741
RNA type mRNA
GC content 0.49
exon number 32
gene id nrcama
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6805262 ~ 6852998 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATTAGTGTCGCGTCGCTGCAGCTGCGCCTGCACTGAGCGTGCGCGGGACGGCGCTGCGCGTTTGACAGCGGCGAGAGAAAGGGGAAAGCTGCGGCGCGCGCCGACAAACAACACGCCAGAACGCACAGCCGTCCCATGAAACCGGACAGCTCGAGGATTCATCACTGGAATCGCTTCCACGCTATTCTGAGCTGCTGACGTCTGGTCGGAACCGGAGGATCCGCTCTTTCATACAGTCCAAACAGtcTTGCTGGCTAATCGTGGATGCCCCTGTGTGTTTGAATGGTCACATTGAGTGCGAATCACAAGGCCCAGTTGCTTTGACCTGGAGGGGAAGGATTTTCATGTAACGCACCCTGCCATGGACAGGAAGAGGAGTTGCACGCTCTGTGGAGGAGCTGTGATCATGCTGCTGCTGTTGGGTCACATGACCAGAGCATTAGAAGTGCCTCTAGACCTGCCTCAGCCTCCCACAATAACTCATCAGTCCCCTAAGGATTACATCATCGACCCTCGGGAGAACATCATTATCCACTGTGAGGCGAAAGGAAAGCCTCATCCCAGCTTTTCGTGGACACGTAATGGAACTCATTTCGATGTGGAAAAGGATTCCAAAGTTATCATGAAGCCCAACTCCGGCACTCTGGTCATTGACATCAGTGGAGAGAAGGCAGAGGCGTACGAGGGAGTTTACCAGTGCATCGCTCGCAACGATCACGGCTCTGCCATGACCAATAACATTGTCATCCGTCAGTCAAGGTCCCCCTTGTGGTCAAAGGAGAAAATTGAACCAATCACGGTGCAGAGGGGAATGTCTTTAGTGCTGCAGTGCAGACCCCCAGCTGGCCTGCCTCCTCCAATCATCTTCTGGATGGATAACAATTTTCAGAGACTTCCCCAAAATAGTCGTGTATCCCAGGCTTTAAACGGAGACCTGTATTTCTCCAATGTGCTCATGGAAGACACCAGGAATGACTACATCTGCTACGCCCGCTTCCCACACACTCAGACTATCCAACAGAAACAGCCCATCACCGTCAACGTGCTGGACATTGAAGCTATGAATGACACTGTGTTGGCAGCTTTTTTGAATGGCTCAGATTTTTGGGGTGATAGTCCATCTGGGGAGAGAGCGCCCACTTTCATGAACCCACCAGGAACTCACAGCACCACCATGGTCCTCAAAGGAGACACTCTGCAGCTGGAATGTATCGCTGATGGCCTtccgACGCCAGATATCTCCTGGAGCAAGGTGAACGGGGACCTGCCAAGCAGCCGTTTTTCATTTCACAGTTTCCAGAAAACTCTGAAGATAACGGAGGTGACAGAAGCGGATGGGGGAGATTACCTCTGTTTAGCCAAGAATCGCCTGGGGAGCAACCAACACATCATCACTGTGGTGGTCAGAGCGGCTCCCTTTTGGATCAGTGCCCCTCAGAACCTCATCCTGGCCCCAAAAGAATCAGGAATGCTCACCTGCCGGGCAGAAGGCAACCCTAAACCCACGGTCACATGGTCTGTCAACGGAATTCCCATTGAAAACTCACATAAGGACCCCAGCCGGAAAGTTGAAAATGGCAATATCATCCTCAGTGATGTTCAGACGGGCTCAAGCTCTGTTTATCAATGCAATGCCTCCAATGAGTACGGTTACCTGCTGGCCAATGCCTTTGTCAGTGTTTTGGCGGAGCCTCCAAGGGTGCTGACTCCTCCAAATCACGTGTACTCAGTAGTCACTAACAGCAGGGCTCTGTTAGACTGCGCTTCGTTTGGTTCACCACTTCCAAAAATCACATGGTTTAAAGTCAATCAGAGCATAGTGGACAGCGACTCGTTtatcattcataaaaacaatactttaGAGATCAACGTGGCTCGGCCACTGAACAGCGGCAAATACACCTGCATTGCCTCGAACAGTCTTGGAAACAAAGAAAATCATGTCTACCTGGAAGTGAAAGAGGCTACACGGATCATCAGACAGCCCGAGTATAAAGtagttcagagaaacagcatgGCTGTGTTTGAGTGTAAGGTCAAACATGACGAatctctctttccctccatGATATGGCTCAAAGACAATATGGAGCTTCCCGACGACACACGatTTGAGGTGGGCTCTGATAGTCTGACTATACATGATGTGAGAGAGGACGACGAGGGCAACTACACCTGCATCAGAAACACCACCCTTGACCAAGATTCAGCCAGCGCCATGCTCACAGTAGTCGAGGCCACACCAACACCACCTATAATAATGGAGCAACCAGACCCTCCCACAGACCTGGAGCTGACAGACCAAAGAGAGCGCAGTGTTCGGCTTACATGGACCCCTGGTGATGAAAACAATAGTCCTATTCAGTTGTTCCTGATCCAATATGAAGACTCGCTCCACGAGCCTGGAGTATGGGTCAATATGACTGAGGTTTCAGGAACCAGCACCACAGCACACCTGGAGCTTTCCCCGTATGTGTATTACTCCTTCAGGGTCTTGGCTCTCAATGAAGTGGGTCTGAGTAAAcccagcgcttcatccagacagTACAGAACCAACCCTGCACGGCCTGACATGAATCCAGCAAACGTAGAAGTCATAGGAACGTCACCTGACAGTATGACAATAACTTGGAGGGAGCTTAGTGGGCTGGAGTCGAACGGTCCAGGCCTACAGTACAAGGTGAGCTGGAGACACAAAGATCTGGATCAGCAATGGACCTCACTCACGCTGGCCAATGTCTCGCAATATGTGGTGCCAGGGACGCCCACTTTTGCACCCTATGAAGTCACCGTGCAGGCGGTCAATGACTACGGCTCTGGTCCCAGACCAGAAGTGGTGCTGGGCTACTCAGGAGAAGACTTACCAACTGTGGCCCCAGAGAACGTAAGAGTTTCGGCTCAGAATGGGACAATGGCTGAAGTGCTCTGGGACGCTGTTCCTCTTTCAACAGTTCGAGGGAGACTGAATGGATATAAGGTGAGTTATTGGAAGATGAGAAGCCTGCACAAGGAAGACCTTGATCCCGTGAAACCACAGGAGCTCATCTTTCACGGGAGTGAGCCGGAGGGTCTTCTCATCGACCTTCATCCCTACAGCCAGTACACCCTCAACATCAGAACCTTCAACGGCAAAGGAGACGGACCCGCCAGCTCCAATCACATATTTGAAACACCAGAGGGAGttCCTGGGCCTCCTGCAGATATAAAAATCCAAAATCTGAACCTGGACTCATTGGTTGTGAACTGGGTGCCGCCTGTAGAATATAACGGTCACTTGACAGGATACTTGCTCAAATACCAGCCTATCAATACAACTGATGAACTCGGGCCGCTCAAAGAGCTGCTTCTACCAGCCAACGAGACCAGCGTCACTCTGGAAAACCTCAAGCACAGCACTCACTACAAGTTCTATTTGAACGCCATGACCATCAAGGGCTCTGGCCCCACTGTCACAAAAGAGGGCTTCACAATGGTGGACGAAGCATTAATTCGGCATCCCGCAGTAGAGGCGGGTAAAGGCTCAGCCCCCCCTTCACCACCACCAACCCCCCCTGTCACTCAATCTTTGCAGCCCCCGTTTCACAAGGCGCCTCCTGCTGGTCGGATGTTTGGGAGCGTGAACTCCTCTGTGGAGGAGGACCGGGCTGTGATAAGCTGGGAATACTTTGGGCCGGATAGGAATGTTTATGTGGAATATGTTGTTGATAACAGTAAAGAACCCTGGAAAACAGAGTTTGTAAATGGCACTCGGACATATCAGATTAAAGGACTAAAGCCGGGGGTGTCCTATAGGGTTCGGGTGGTAGCCAAAGACCACTCGGACACTACGGTCCACAGTACAGAGGAGATGTTGATTACAGTTCCAGCCATGACCAGCAAGCAGGTTGACATAGCCACGCAGGGCTGGTTTATCGGGCTGATGTGTGCCATTGCTTTGCTGATCCTGGTGCTCCTCATCGTTTGCTTTATAAAGAGGAACAAAGGAGGCAAATATCCAGtaaaagaaaaagaagatgcCCATCAAGACCCTGAAATCCAGCCCATGAAAGAAGATGATGGGACATTCGGGGAGTACAGTGACACGGAGGATCACAAGCCCTTGAAAGGCAGCCGGACCCCGTCCAATGGGACGGTCAAGAAGGACGACAGTGACGACAGTCTGGTGGATTACGGCGAGGGAGGAGACGGCCAGTTCAACGAGGACGGCTCGTTCATCGGCCAGTACAGCGGGAAGAAGGAAAAAGACACGGCGGAGGGCAACGAGAGTTCGGAGGCTCCCTCTCCGGTCAACGCCATGAACTCCTTTGTGTAACTGCCCCGGAAGCGCCTCGTGACCTTTGACCCATCCAGCACCCCACCTCCTCGTCACACCATCGTATGGAGAACAGTCTCTATTGCACTGTGACCCCCTAACATCAcagcaaactaaataaaacaaacgcCCCCCTAACGAAAGACCGCGAGAAGAGGGCCAGTCCAAGCTTCACCGCCATTGGCCGGAATGAAAGTCACATGACATTAAGTATATTATCTCACAGCAAGCGTacatatatattgatatatgtGTATAGGAGTATATAAATtgacatatattttattaacatggCCCGGTTTGCGGCAGATGGCACTGTATCGCACCATCTCGTCCCTTGGACTCGCATGGAATCAGTAATTGACGTCACATCCtcagcaaatcagcattaaGGTGCGGTCACATTCGGCAAACTCTCGCTTTCACGTTATGGTAGGAATCGGTGCGATTTTGCATAAGTAAACAGGTCCAAGTGTTCACGGATTCAAAGTGACTTCTGTGTGAACAGTGCCTCATTCATCGCTAccattacctttttttttttgttgttttcgcTGACGCGCCGATGTGACCGCACCTTTAGCCAGCGTCGTGGAGACCGTGAAACTCGTCTGACTTTATGATACTCACTTTTGCTTCACAGCTAACGCCCGTTGCGTTCCGTCGTCAGTGTTCAAATCGGTATAATGCACATTTCAGGCACCAATGTTCTTCGTGGGCATTGTCGTGGAGTACGTGATACGTGTAAAAGCTGTTCTTAGGCGTCAGAGGTTTTGaatatacagataaaaaaaaatccacagaaTTTTAAAAACTGGTTATCAGGGATGTGAGGTAGCatgtttttcacacacacaagcactctACACAGCTTTTATCCTTCTCTTGTTGTTCATTTTGCGCCCTGTGTTTCTCCTATTTATTTGACGACtgcatttttcaatgtttttcccTGAAGAAAAGTCATCGATAGACTAGTTAAGGCTCACTTCATCCAGGACTGTTATTGTGAAGGAAACCCCCCCCCAGTCAGCCATGTAGCCACTCGTGAGCCCACTTTGGGCGCCAGAATTCACTCTGCTCTTGGTTGTACAGTACGGGATGCATCGAAGGCCCCTCAGCACGGTTCCTTAGTGCCTTGGTAGAAAACATTACTCTGTACTCAAAAAGAAAGATTCCCTTTCATCGCTTTGAGCGCAGCCCTCTTTTATATCAGTACTGCAAGCGGTAACGAAGTCCTGGGCTGAGCGAAGACCGCAAGACTCAAGGAAATGATGTCACCTACACAGCCGCCACAGAAGTCACCTCAAATTGGGGTGAGGGGCATCTCATTCCCCTTATCAACAGCTAAAAATACTGCCACTTCTCTGTAAAGAGCGAACTGCTGTTGATCGGTCTGATTCGACACCGCTCACAACGGCAATGCGAACGATCAAACTGTGGTATTTGCAGTGGTACGCGATACCAGTGGGCAGAAATATACACATTCTCACATATAACCGTTTTTTAAGTCACGTTACTGCATGTTACGAAGTATTACGAGCTGTCGGGTGTGGTGAAATCAGGGCTTCACTAAACACACAGTCGACGGTGGTGCTGTCGTCGAATACGGCTCGAGCGCGTGCGGTTTATGCAGGCGTGCATGAATATGTGCGTGCGTTCAGAATGGATGTGCGCGAACGCgtgtttgtgtctgtatataCGGGGCGAGCCTTTTTCGTTcgttcgtttgtttgtttttggcaaGGCCCTAGATTTTCATGATTTAGCTTGTCATAACTTGCATCAAGTTTTTTAGTTCGGAATTGTCTGCTTTTTAATGTATAGATCTGGCGTTTGCTTTGTAAATATATCTAGCCGAAATTTTGACGTTAAAGGCGGAAAAAGCTGCTGAGATGGCCCTTGAGCGTGTCCCAGAGTGCTCTAAGGAACTGTCCCGGCAATCCGTGTACTGTAAGTCACTTCAGATGAAAAAAAGTGACGACAGCCCTATTTTCTGAGCCCAACCGATGACTGAGCAGGCGTAAGGTTGCGCTGCAGAAAACCGCACAGTGTTCCACCtgaattcacacacacatcagctcTCACTCTTTTAAAGGcactgttgttttcttttctatttggCCAGGTggtttggctttttttctttttttttttctccaggaaaaataaagaaaacggACGCATCCCCAGAGAAGGAGGCCGGATCGCACTGCTGTGGGTGCAGAAgctttttgatgtgtttttgtcagaGGGGGCAAAGACGAATGAAACGTAGTGTGTGAAATAATATTCTGGTTAATGTTAAAGCtacatgaaaataaagcatgaaaGGCTGTGAAATGGTTTACTCTATAATATAAtcgcaaaaaaatattttgtatataaaaggattaaaataaatgttggttTCCGGATTTCACTACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39419 lncRNA upstream 400869 6399167 ~ 6404399 (+) True G26585
TU39344 lncRNA upstream 507188 6296133 ~ 6298080 (+) True G26517
TU39345 lncRNA upstream 507348 6216841 ~ 6297920 (+) False G26517
XR_006250600.1 lncRNA downstream 132245 6985243 ~ 7013661 (+) True LOC122342579
XR_006250775.1 lncRNA downstream 204426 7057424 ~ 7061042 (+) True LOC122343425
TU39534 lncRNA downstream 230302 7083300 ~ 7088359 (+) True G26669
TU39562 lncRNA downstream 334942 7187940 ~ 7227437 (+) False G26692
TU39831 lncRNA downstream 560938 7413936 ~ 7463373 (+) False akr1b1.1
XM_043237093.1 mRNA upstream 3311 6792052 ~ 6801957 (+) True pnpla8
XM_043236387.1 mRNA upstream 14790 6784111 ~ 6790478 (+) True ccdc87
XM_043236197.1 mRNA downstream 771 6853769 ~ 6864948 (+) True cntn1b
XM_043236198.1 mRNA downstream 2372 6855370 ~ 6864948 (+) False cntn1b
XM_043236199.1 mRNA downstream 3495 6856493 ~ 6864948 (+) False cntn1b
XM_043236322.1 mRNA downstream 37951 6890949 ~ 6918247 (+) True pdzrn4
XM_043236512.1 mRNA downstream 101799 6954797 ~ 6970418 (+) True pphln1
TU39399 other upstream 414341 6388837 ~ 6390927 (+) True vhll
TU39185 other upstream 907497 5892985 ~ 5897771 (+) False LOC122342837
TU39144 other upstream 951887 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other upstream 951887 5850429 ~ 5853381 (+) False LOC122342465
unassigned_transcript_304 other upstream 1406301 5398880 ~ 5398967 (+) True trnay-gua_2
TU39561 other downstream 372523 7225521 ~ 7227437 (+) True G26692
XR_006250877.1 other downstream 517137 7370135 ~ 7370275 (+) True LOC122343893
XR_006250876.1 other downstream 520856 7373854 ~ 7373994 (+) True LOC122343892
XR_006250663.1 other downstream 679922 7532920 ~ 7558489 (+) False ube2h
XR_006250662.1 other downstream 679922 7532920 ~ 7558489 (+) False ube2h

Expression Profile