RNA id: XM_043236945.1


Basic Information

Item Value
RNA id XM_043236945.1
length 6548
RNA type mRNA
GC content 0.47
exon number 13
gene id atxn7l1
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 939160 ~ 957350 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGAGCGCCGCCGAGCACCGCCGAACACAGCCGAAGGTGGCGTCATATGTTTCTCTAGCTCGCTGGTCTCGCTGTCTGTGAAGGAAGAAGGAAGAGCAATGGCGACGCTGTACCGCCGCGCGCTCACACTGCACTCGGGAGCCACGGCACGCGCGATCTTTGCTCTGATGCTGCTGGGAAGAAGCTCTTGAAGGGTTCAGAGGTGATCAAACTCAGTAAagcagATATGCTGTTATATGGTCACGTCTCGACCCATGAGGATTTCAACCCCGTCGTTTGCGATGCCTGCATCAAAGTCGTTAAGCCTCGGGACGTCCTGACTCATTACGAACACGTGCGCTCGTGGAACGGAGAGGTGCCTCGCGCGGCGGGAGGCGACTGTAATGCACGGAAGGCCCTCTGGCGGCTCGCCCTCGCCCCCTTCTGACGCCGATCTCGCATAGCTGCCTTTCTCTCTCGCCCGCTTTGAGAGCGGACAGCTGCGGGGCCGCGAGGGTTCGGCGCAGGGGTCAACGACTCGCGGCTATTCAGCTCAAAACCCAGAAAGAGAAGGCGGGATGCCTAGGCATGCTATTCTCtcgtctgttttttttcttcttcttctttcgctttcagtttttttctctctttcttcttcatcctctcaACCGCCGCGGAGCAGACAGGCTGGGTAGTTGGAGAATAGCTGAACAGTGAGCAGAGAGGAGCACGACCACCTCGAGCCCTCTAGAGCCATGCATAGCAAGAACCAGAGGAGACACTGTTCGCCCAGCAGCTCCAGGACGCCTCTGGTTCCCGTCAAGGCCAAGATGTCGGCGAGCCAGAGCGAGGTGGAGCCCCTTCCCTTCCGGGTTCCCCGTGATTTCCCGCACTCGCGCTTCAGCAAGGCGCCGCTGGCCGTCTATCCGCCCAAAGGAGCCCGAGCCAAGGCCTGCGTGTCTTTACCTGTGGTGAGCCTGGAGAAGATGCCGTGTTTCAGCCGATCGGAGGGAGCGCACATCAAAGTCAACTCCGCGTCTCCTTCGCCCGGttcctctctttccttctcctCCGCGTCTTCCTCTCCATCTTCCGCTCCTCTCAAGTCCTCCTTGACGTCGCCAGCATCTCACAAGAACCAGGAGAAGTTCCTGAACGGCCGCGGCCCTGTGACTCCTCGCTCGGCCACGCCCCCCTCGCTGATTGACAGGCGGCCCAGCCCGTCACGGTCGCCCCTGGAGAAACGGCCCGCCCCCTCGCCCTCCTCACAGGACCGGAGACCCACCGCCTCCACGTCTCCGTCTCTATTGGACCGGAGACCGATAGTCCCTCCTTCTCCACCAGACAAGAAGCATCAGAACGGAGCCAAAGGCGGGCGGCACCGGAGAGTGTCGGGGAGAGTGTTTGATCCTAATAAACACTGTGGGGTTTTGGACCCAGAGACAAAGCGGCCTTGCACTCGATCTTTAACCTGCAAGACTCACTCTCTAACCCATCGGAGAGCCGTCCCCGGACGGAGGAAAGACTTCGATGTCCTTCTAGCGGAGCATAAGGGACGGGCGAAAGAGAAGGAGACCGGGCAGAAAAAGGAAGTTCAAGCAGGCAGCCAATCAGTGCAGGTCACGCAGTCACATGACTCAGCAACCAGCCTATCCACAAGCTGTACCAATGCCAAGACCACGCCCACTATCAAACTGCAGCTGGCCAACTCACACCTACACAGAGCGCCTGGCGGAGCAGTGGTGTTCAGCTCAGTGCCTGTTCCTCCTCCCGAACCTCTGGCCTGGCAGCAGTGCAGCGGAGACGCGCGTCTGTCCAGCGATGAAGGAGAAACGGACCTCCCCGAGGAGCCGGAGAAGACGCCGTGCCACTTCTCTCCCCAGCACCCGCGAGCCCTGAGCTGCTGTGCGTTCAGCAGCCGTTTGATGGGACGGGGGCACTACGTGTTCGACCGGCGGTGGGACCGGGTTCGGCTCGCGCTCCACTGCATGGTGGAAAAACACGTCAACTCTCTCATGTGGAGGAAAGTCCCCCTAGCGTTGGAGAGCATGACGAGCCCCGCTGAAGTTTCTCCCCTGGGCTCTCCGTTCGTGTCGAACCACACGCTGGCGGCTCCTCTGGACGGCGTCTCCATGGTCTCGTACTCCACCTCTTTCTCTCACAACGGCGCTGGGGTTTTCTGCATCCGGGACCCTGGACCCGGACCCCGACCGCAGAGGAATAAACCGGCCAAGCCGCCCAAAGCCTCGGGGGACGGAGCGGGACCTAAAAAGCGGAAAACGCCTCCTGCCTCTGAGTCACGAAAGAGCGGGAGCAGCGGGAACAGCTACCATCTGCCACTGGGCGCGGCGCACATCAGCAACGGGACAGCGGCCCTCAGCGTGCGGGCCAAGCCACGGCCGGGGGCCCCGGGGCCGAGGGAGCAGGACCGCTACGGGAGCGTGGAGCTGTCCCTCCCGCAGGCCCTCACCGGGGATCACGGCGGCGTCTTGTCTCACAGCCCTCTGCCCTACGGATCCTCCAACGGTAAGAAGAGGAAGAGCTCTGGAGCGAGCGACAAGCCCAGCAAAAGCACCAAATCCACAGCACTGGGACTGGACCCCGGGATATTCAGGAAGAGCAGCGGCTTGCTGTCGTCTGCCGCTGAGTCGCCCCACAGCGCCCTCCCCAGACAGCCCAAGGTCCCGCACTGATGCAGTGTGAGTCTGAGAAGAGTTTGCCGCGGGACGCCAGCACTGTGTCTGTCCTGCCTTGATCCCACCGCTGCCTCTTACACGCCGCTACGGTTGAGTCGCGTCCTTcgcctcctctcctctcctacAGGGCTCCTTCCCATCCGTTCCCATCAGGAATAGACGCTTCATCTGCCAGTTCATCAGAGAATGATTCCTCACTTCTCCTTCAGCCTCGTGCAGATCCGGATTTTGATTTAAACCAGTACACAACGCGTTTCAGACATTCAGCGAcatggagttttattttagtttttgtcgTAGAGGCGGACAGCGTGAAGGAAAGCCCTTCGGACTCAACCGTGTCGATCTAAAGTGCACTTAATTTCAAGTCTGAactacgtaaaaaaaaaaaaaggaggggaAGAAACGTTTCAAACAAGGGAATATTTTACAGACGCTTTTTCGGCAAgttgtatttttctaaaattgGATGAATTCAGGTTTTTGAGTATTTGTTTTTGACACACAAGTGTTtgtcgatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagacacgcGCCCCCGTGGTAAACTTCAACCGGTGATgaattttgtataataatttatccttttattaattttctaacTGACCTGATTAGCGCTTCACACGATGAGCAGAAGTATATTTGTATGCCATTTTAAAGGTTGAAAGTATTCTAGAGACCCTATTGTTGGAAATGTGTGTACAtatcttttattataattgttttgttttgtatttattgttagtTTTCTCTCAGAGGTTCAAGGATTTAGTGGTTTCTATCTTCCTCGGTCGTATGTATCTTCATTGGTTATGAAAGGGCCTTTGCGTTTTCCATTTATGCTCTCCGATTGTGTTTTTAAGGAatactaactgaaataattaCGTACCGCAGGATCCCAGTCTTTCAAGACTGTTCTAGAGGAAAGGTACATTGCTGTGAGCCAGTATTGGCATTCGGCCGAGGTCtgttgccaatttttttttttttttacgtgttgTCAGGTCATAAGCGCACCTTTTTAGTGTTTGACCATCAGATATGAAGACCTTCTCAAAGAGTTAACGGAGGAATGTCTGCTTTTTATTACACTGTTGTTTTTATCCATTGATCACGCATTAATAATTTCAAGCATAATAGAAtcgtttctgaaggatcacgtgacgaTGAAGAGCGGagtaatgacgctgaaaatGAAGCGTTGCATCGCAAGaataaaatagatattaaacaatattctaatagaaaacagttattttaaattgtaataatatttcacaattttacagtgttttttatcaaataaatacagccttggtggaAATCAACAACTTAAAAAtcgtacatttaaaataaaaatgtgaatggcAGTGTCTCTAGCCTAGTTTTGAATAAATCTAAAGcattatatatagattatacGGTAATAATGTGATTAACTTCCCACTGAATATTCGGTTTTACACTGAAATCGCGACAGTATATGGATTGTAAATGTTGACATCGAGGGGGAAGAGCGAAGAATTGCAAAATAATGCTGATTTCCAAACAGGTTTACAGATCAATGCGCTTTCGCATTGAGACATTTTCTCTCGTTTAATCTCTGAGAAGCTCTTCGTCAGAATCTTaatacttaaaggaacagttcgcccaaaaatgagcattttctgaaaatgcacTCGCCCTCGGGTCATCCAAAACGTCaacgagtttgtttcttcatcaactTGAACGTTATATCACTTGCTCGTcagtagtgaatgggtgccgtcagtatgagagtctaaacagcttgtaaaaaaaccccaaacatccatAATGGCTTAGTTGAAGCAATGGTTTTAAGTTAACAATGTCTTaacgatggatttgtttataaaaaagcaCCAGTCTTCACTAGATTAGAATCGATGTGCTCCAgcggtgtggattattgcgacGTCACTCTCattcgacggcacccattcaccgcacaAGCGATATAATGCTCTCCCGaggctttatttttaatcagagtTATTTAAACTATTCCTCTAAGGAGCCACAACTCCTTTAAAGACCCCTCTTTGCACTCTTTCGTTTTCTCTTTCTGGTTGTTTGTTGAATTTGAgtaccattttatttatataaaaagcaagGAGAAATAATCATGTATAGTTGTGCAAAGACAGTACTCTCTGTGAACCCAGCTTGTGTTTGCTGTGACGGCTCTTCATCCCCCAGATTATTACCTTGTTGCCTTGCTGCCAATGTGAAACTGTCCATAGGTCAGCTACCAGAGCTAGAACCCAAGCCCGGACCCCCCCCCTCCGCACCATCTTTTATGCGTGAAGCGCTTCCATAAAGATTCGGCGCCCGTTCAAGGTCATCCCGAAGAAGACGAGGATGATCGGCTACTTGTTTTGCCTTTTCCCGTTGCACGTCAATCATCGGAGATTATTCTATCTATATTTTTTCAGAATAGCGCGAAGGACCGCTTAAGCAAAACAAATGATATTGCAACGCGGTCGAGATCTGATCCCCCTTTTGACCTTATGGCTCTTTCTTTTGGTCCAACAGTGCCACAAATCTCTGTGATCTACAGTTCATCGACGGGAAATGTTGAACTGTTACTAAGCTATGAAGTGTTATTATACAGTAGGTCCTTGTAAACACATCCCTCTtgtagaaatgaatgaatgtcacCATGGCATAGcagtgcaattttttatttatgcgttttattttaaggttttgcttttaatgattgtttttgttatcaTTATGGAAGCCCATCTCCTTCACggaattagaaaataaaattattattattatttttttatttttttgcaattatgacTTTTCATCGTAATTCAGAGTAATCTCACAATTCGGATTTAGGTTTTGCAATTCAGAGAATAAAAGTCGAATTCTgacttttgtctttttccacAGCTCTAACTTTTTAATGCGATTTGTGAGTTTGTATCTTAAAAAATGACGTTTGCTGGGGAGTGTTATGGGTTTCcatactttatataaatataatatttattcacttttttttttattttgttttatagtttaatttagtttttttatttcaatatttgcatatttttatttatatttttgtagtttaacATGCTTTTTCGGGGGGggattgcattttatttctgcgTTCACttcttatttctattattataacTCTTTTCAGCAGCTTAATGGCTGATTTCACGAAGAACGGCGTGAGACTCCAATCCTCATTGGTTTACTTTGAATATTTGTGAACATGTTCGGTTACACAAAATCACACGCAGAGTTTCCTACGAAAGACACCCAGCTTGCTTCCacgtcaacaacaacaacaacaacaacaaaaaatgccTGAAGCAATATGAATTAATTCTGCAATGTTCTCCGTTCTGTTCAGTTGGTCTACTGATATATGTAATGTTGCATGTGTGCATACTACTACTTTGCCATTATTAGTGAATGTCACTGCTATCTAGATGGTTTGTCCTGACACTGCACAAGCAGCCCTGTTCCCGGCCACACCGCCTGTCCACTTCTGTCATGTTGTAGATGTGTTATAGCTACACCTTCAGTGCTTCGACGTGACCCAGCCATAACAATTGTAAAGATTTCGAAGGCCTTATTTTTATACCTGGACTCTTCGTACagaatctgtttaaaaaaaaaaaaaaagtgttaatagGCATTTCTCTCATTCCTAAGACGAGCTCCTGTGTTCTTTATACAGTTTGTGTCCTGTTGGCCCATGTGTTCTCGATATAGATGTGTATTTTCAGGTTTGATGATATTTTGCATTTCAGCTgttacagaaatacatttttcttaccTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36909 lncRNA upstream 6049 864840 ~ 933111 (+) True G24811
TU36856 lncRNA upstream 287567 649509 ~ 651593 (+) True G24768
TU36846 lncRNA upstream 313935 623251 ~ 625225 (+) True G24758
TU36839 lncRNA upstream 319464 619477 ~ 619696 (+) True G24754
TU36836 lncRNA upstream 323304 615600 ~ 615856 (+) True G24751
XR_006250559.1 lncRNA downstream 155545 1112895 ~ 1127380 (+) True LOC122342413
TU37037 lncRNA downstream 290030 1247380 ~ 1249169 (+) False LOC122342481
TU37074 lncRNA downstream 329262 1286612 ~ 1287073 (+) True G24925
TU37102 lncRNA downstream 372115 1329465 ~ 1331843 (+) True LOC122342419
TU37142 lncRNA downstream 599042 1556392 ~ 1557778 (+) True G24968
XM_043236948.1 mRNA upstream 1337 934046 ~ 937823 (+) True sypl1
XM_043236947.1 mRNA upstream 7482 917582 ~ 931678 (+) True nampt1
XM_043236970.1 mRNA upstream 30836 890697 ~ 908324 (+) False fgd4b
XM_043236971.1 mRNA upstream 30836 891964 ~ 908324 (+) True fgd4b
XM_043236961.1 mRNA upstream 52371 867196 ~ 886789 (+) True LOC122342829
XM_043237157.1 mRNA downstream 984 958334 ~ 969359 (+) True znf800b
XM_043237158.1 mRNA downstream 1007 958357 ~ 969359 (+) False znf800b
XM_043237155.1 mRNA downstream 12785 970135 ~ 1111519 (+) True grm8a
XM_043237156.1 mRNA downstream 63687 1021037 ~ 1111519 (+) False grm8a
XM_043236306.1 mRNA downstream 288228 1245578 ~ 1248290 (+) True LOC122342481
TU36860 other upstream 273630 654092 ~ 665530 (+) True G24771
TU36683 other upstream 565078 373527 ~ 374082 (+) True G24632
TU36680 other upstream 565336 373527 ~ 373824 (+) False G24632
TU36656 other upstream 644091 293235 ~ 295069 (+) True G24609
TU36577 other upstream 854198 83688 ~ 84962 (+) True G24555
TU37077 other downstream 330962 1288312 ~ 1291224 (+) True ndufa5
TU37269 other downstream 713162 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 826942 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 2158158 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 2162179 3119529 ~ 3306758 (+) False erc1b

Expression Profile