RNA id: XM_043236949.1


Basic Information

Item Value
RNA id XM_043236949.1
length 4344
RNA type mRNA
GC content 0.49
exon number 21
gene id sfmbt2
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13190604 ~ 13227324 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGCGCCCGCGAACGCCCGATACCGTCCACGCAGGCGGCACGCGAGCTTTTAAGACACAGCCGCGAGTTTCCCCACACGAGGGAGGCGGAGGCTCGGGCCACTTCTATTTATAATGGGCTGAACAAATTTTGCAACTGTAAAGGTCAATGAAGGAGTCGGCTTGAAAATAATCTGTAGATGTTGAGACATGCGCAGATGCGGGATGATGCCAtattggacacacacacacacacacacatacacaccgcTCCTGCTTCAACCAGAACACCGGATCCCTCAATTCAGATAGACGGAAAAAAACTCGCTTAAGGCATGGACTGTGCAGAGGAGGAGGTGGATTTTAACTGGGAGGAGTACCTTGAAGAAACTGGAGCCACTGCCGCCCCTCACACTTCATTCAGACATGTGGAGCTCAGCCTTCAGAGCAGTTTTCAGCCTGGAATGAAGCTTGAAGTAGCTAATAAGGGCAGTCTGGATACATATTGGGTGGCCACCATTATAACCACATGTGGTCAGTTGCTATTGTTACGCTACTGTGGCTATGGCGACGACCGCAAGGCTGACTTCTGGTGTGACGTAATGACAGCTGAACTTCATCCTGTCGGCTGGTGCGCTCAGAACAACAAAACGCTTCAGCCACCTGAAGATAACGTTTACCTCAGAGCAGCTATTAAAGAGAAGTACAGCGACTGGACCGAATTCCTCATCAAAGAGCTCACAGGTTCACGGACGGCGCCGGCAAACCTGCTTGAAGGGCCATTAAGAGGTAAAAACACAGTGGATCTGATCGTGTCGGGCTGTATTTTAGAGGTACGCGATGCCTTTGAACCCAGCGTGTACTGGGCGGCACGGGTCCTGCGTAACGTCGGCGGACGTTTGTGCCTCAGCTACGTTGGACTAAACGATTCAGCCCATGACATGTGGGTGTTCTACCTTGACACCAGGCTCCGCCCCCTGGGCTGGGCCAAAGAGAATAACCTTTcactgaaaccacccacagACCTGTGTGATTTGAGGAGCAGCTCAGAATGGACTGAAGCTCTAGATGAAGCTACAACTGAAGCCTTGAAAAGTCCCCTTCCACTGGAGGTCttcaaggatcACGCTGACCTGAGCACACACTCCTTCAGGGCGGGAATGAAGCTCGAAATGGTGTCACCCAAGGAACCCTTCCACATCTGCCCTGTGTCTGTAACTAAAGTCTATAATGAATACTACTTTCAGATCACGGTGGATGACCTCACAGCCGAAGCCACGCCCACTCGTGTGGTGTGTCACGCCGACTCTCCGGGCATCCTGCCAGTGCAGTGGTGTCTGAAGAATGGTGTCGGGCTGGAGAGGCCACAAGGTTTTGAGTCACAGGACTTTGACTGGGCGGACTATCTCAAACACACCGGCGCCGAAGCCGCTCCAGATGTGTGTTTCCCAAACgcgtCTCAGGGCAAGGGCTTCTGTAAGGATATGTGGCTTGAAGCCGTGAATCCGCTCCAGTCTGCCGAACTCTGCGTCGCTCGCATCGCTCAGGTCAAAGGTCGGCTTCTCTGGCTCAGGCTGGAAGGTCTGAGTAAGCCGCAACCGGATTGCGTAGTGGATGTCGAGAGCACGAATATCTTCCCTGTGGGCTGGTGTGAAGCTAACGGCTATCCGCTAACACATCTACTGAAGACAGTCTGTTTGCCTCAGAAGAAGATTGCCGTTGTTCAGCCCGAGAAACAgttggCCCCCTCGCAGCCTCCGGATGCCCCTCTTAACCTCTGCTCGTCCGTGGATATAGGTTCGGCGAACGGAAAATACTGTTGCTCCCAGCTCTTCATCAACCACCGCTGTTTTTCCGGTCCGTATCTCAACAAAGGCCGAATCGCGGAGCTGCCCAAAGCCGTTGGGCCTGGAAAGTGTGCCGTAGTCCTCAAAGAGATCCTGACGATGTTGATAAACTCGGCGTATAAACCCGGCCGTGTGCTCAGAGAGCTGCAGATGGTGGAAGACCCACAGTGGAACTGTCAGGAAGAAACCCTGAAAGCCaaATACAAAGGGAAGAGCTACCGGTCCACCACGAGGATCGTCCGGACCGCGGATCAAGTCTCGGAGTTCTGCCGCCGAGTATGCGAGCGACTTCAGTGCTGTCCCAATCTCTTCGGCCCGACGATCGTGTCCGACAAGTGCCCCGAAAACTGCTTCAGCCAGACCAAGACCAAATACACGTATTACAAGAAGAGGAAAGTGGGACGCCCGAGCTTAGGGGAGAACGCGCAGGACGGGGACGTGACCAAACCGGCGCGGCGCCGGAAGAAGCGCAAAGCCATCTTTGTGCAGAAGAAACGGCGCACGTCTATCGTGGGATACCACACCGCAGAGTCACCTCAGGATAGCGATTATTactatgatgatgatgaagatgaagacgtCGAGGAGTGGGGCAGTGAAGTGAGTTCCAGCTCGCCGCCTGAGGAGGCCTCAGCCCACTCCTTCAAGGACGTCCCGAGGAGAGGAAGACCCCCGCGCCGCGCCGCTCTTCAGCGCAGGGCGACCCATCCAGGGCCAGAACCCACAGACAGATCGTCTCCCAGAAGAACCACACGCTCGGTTTCTTGCAGCCAGAACCAGGCGGCCAAAGACACGCACGCGAAGACCGAGGGTTTTGAAGAGGAAGACCGTCTGGTGTTGGAGACCAATCCTCTGGAATGGAGCGTCTCTGATGTGGTCGACTTCATCACGTCCACGGACTGTGCCTCTCTAGCGAAGATATTCCAAGAGCAGGACATTGATGGACAGGCCCTGTTGCTGCTGACCCTTCCTACCGTCCAAGAATGTATGGATCTAAAGCTCGGCCCCGCCATCAAACTCTGTCATCAGATCGAGCGAGTCAAAGTGGCCTTCTACTCCCAGTTCGCTAACTAAGCTAACCTCCTTGACGGACGTAAATCTACAGAAAAACCTATATCGTACTCAGGGGATGCGAAGAATCATTCCATCCGTCGGGAAACCTCAGGTTGCCTCATACccaatggattttttttccaaaatgagATTTAGACATGGAATATGACAATTTTTGCTTTCCCTGTTAAAGAGAGCCTCTGAAGGTTTTGGCCCGGTTTGAGTTGGTCAACCTGGTCTCCCAGACTAGTCAACCTGGCCTTTAGAGGATTCAACTGGATGGCCATCTGATCAAGTACCAAAAACTTCTTTAAAAGCCATCAAAACAGCTTAAACAACCTTCCGCTTTTACAAAAATAAGGACTTTAAGAATTGTTCCAAAGGACaacaatgccatagaagaaccatttctgGTTCCCTTTCAATgaacagatctttttttttttttaggctgaTGATACGCTGGGCAGCTTTTTTTGAGCCATGTTGCTTGAGAACCTTTCAATCGAGAAGGGGGTCACAAATTTTTGTCCCGataatttagattaatttattGGAGGTTCCCTCACCTGGTTGATCGTTTACGTCAACATTTCCAAAAGTTGCCCGGCAACATTGTTCAAAAAGTTGCCCGATGTGTCGCCATCCTTAccgtgaagaacctttttccaCCATTGagaaccttttgtggaatggaaagATTCCaaggatgttaaaggttcttcagtGATGCCAATAAAGGACCTTTGCGTTTTAAGAGTGCCGTTTTTTCATAAGCATGGTGAAGACAAACCATACAACCAAAAGAACAAGACGTCCTCCGTGGGAACAAGCGCGAAGTGAAGACGGTTCAACTGTGAAAAACCTGAATTCACCGCAGAACTATCTAAAATTTTATCCGTCTTTTAAGaccaaattatatttataaaggcGACTTGCATATGAAGTATTAACTTCGGAAGTGAACTaatatatttgtgatatttattttgtttccgataaactatttttataatgtgtGCTAGGAGGTTAGGGTCGATTTAAAACCAGAAAAAAtatcaatctggcaacccggGCATTACGGATTAGGGAATATTATTACCATCAAGACCGGTGTTTGATATAAACTTATTGTGTGAGGGGTTATATGTTGTGCGAGTGCGCTGAAATGTGCATACGCGCATAAATACATAACTCTGTTTTCCCAAAATGCCTGCTGTTACGTCTAACGCGTCGGTGGTTTCTCTTTACGATTCAAGGACAAGTACATTTTTGAGGGGCTGCCTTTTGTCATGGCATGTcatgtaaatgtgatttttgatCTATGCAAAATTGGAtatgttttctatatatatatattttttgtttgcaatgACTTTCATagtgatatattttttacttctcTGCTGTACGACATCTTGATCGCAAGtagaatgtattaaaatatgattaactGCTGTCGAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41876 lncRNA upstream 837 13189496 ~ 13189767 (+) True G28246
TU41854 lncRNA upstream 12627 13176963 ~ 13177977 (+) True G28233
TU41825 lncRNA upstream 28761 13161295 ~ 13161843 (+) True G28210
TU41827 lncRNA upstream 28761 13161295 ~ 13161843 (+) False G28210
TU41852 lncRNA upstream 41897 13146387 ~ 13148707 (+) True G28231
TU41892 lncRNA downstream 1057 13228381 ~ 13228601 (+) True G28254
TU41893 lncRNA downstream 2838 13230162 ~ 13230554 (+) True G28255
TU41894 lncRNA downstream 4340 13231664 ~ 13231983 (+) True G28256
TU41879 lncRNA downstream 20445 13247769 ~ 13373966 (+) True G28248
TU41906 lncRNA downstream 85610 13312934 ~ 13321116 (+) True G28267
XM_043236650.1 mRNA upstream 14806 13165740 ~ 13175798 (+) True itih5
XM_043236344.1 mRNA upstream 36252 13150736 ~ 13154352 (+) False kin
XM_043236343.1 mRNA upstream 36252 13150738 ~ 13154352 (+) False kin
XM_043236899.1 mRNA upstream 922848 12170127 ~ 12267756 (+) True LOC122342787
XM_043236993.1 mRNA upstream 1043318 12073703 ~ 12147286 (+) True LOC122342854
XM_043237551.1 mRNA downstream 10890 13238214 ~ 13254897 (+) False prkcq
XM_043237552.1 mRNA downstream 13516 13240840 ~ 13254897 (+) False prkcq
XM_043237550.1 mRNA downstream 13517 13240841 ~ 13254897 (+) True prkcq
XM_043236448.1 mRNA downstream 65664 13292988 ~ 13301954 (+) True il15ra
XM_043236449.1 mRNA downstream 65665 13292989 ~ 13301954 (+) False il15ra
TU41815 other upstream 36246 13150756 ~ 13154358 (+) True kin
TU41253 other upstream 1499475 11689314 ~ 11691129 (+) True ndufb2
TU41254 other upstream 1499475 11689314 ~ 11691129 (+) False ndufb2
XR_006250736.1 other upstream 1774377 11386130 ~ 11416227 (+) False acss3
TU41889 other downstream 78345 13305669 ~ 13315684 (+) False G28252
TU41890 other downstream 78345 13305669 ~ 13315684 (+) True G28252
TU41888 other downstream 86544 13313868 ~ 13315684 (+) False G28252
TU41881 other downstream 95964 13323288 ~ 13530631 (+) True G28249
XR_006250630.1 other downstream 178605 13405929 ~ 13433606 (+) False vezt

Expression Profile