RNA id: XM_043236971.1


Basic Information

Item Value
RNA id XM_043236971.1
length 2794
RNA type mRNA
GC content 0.51
exon number 17
gene id fgd4b
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 890697 ~ 908324 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGATGAGGCTCGACAGACTCCCGGCGTCAGCAATTTCTTGCACGATAAAtgtcacacacatgcattcatgcagaaaaaaaagggaaatgcaGTGAATAGAGGAGGCGTCATGTGCCCCGTCAACATACAGGATTCAGGAGAGCAGCGTGTGGCCGGGTGATCAGgaGATGCTGCATGCGGTGGCCAGCGTGACGTTACGGACCAGAGCTTACTGAGTAACAGGAGCTCAGTGTTGAGAAGGTCAGCGGTCTACATCGTCTCAATGCCTCCTCCTCCAGTTCTTCCGAAACCAAAATTCCAGTGTCCAGAGAAGATTTCAGCTGGAAACATCATGGACGAGGACGAGGCACTGACAAACATAACCAGAGGAAGAACCACAGTGATCTCAAAACAGCACAGAAACATTCACAAGAGCGTCCCCGTCGCTTCTTCATCAGAGCGCCTCGCCAAAGCCCCCGTCTGCACTCAGCCATCCTCGCAGGACTCCGGCTGGCACGTCTGGTCCGGCTGGTGGTCagaagaggtcaaaggtcacgctGAGTTTGGAGAGCAAGAGACGGGCGCCGAACGTCTCCTGGCTCCCTCAGAAGACGGCAGTGAAAGAGCTCTACAGGACCACGCGGACGCCGCTCGGGAGGACGTCCTAAATGAAGAGTCGCAGAACATGGAGAAAGATGAAGACAAACAAGAGCAGATCAAAGAGCTCAAGCTTTATAAGATAGCCAATGAGCTTCTGCAGACGGAGAGAGCGTATGTGACCCGGCTGCATTTGCTGGACCAGGTGTTCTGCGCTAAACTCACAGAGGAGGCTGGGAAGGGGACGTTTCCCGTCGAGGTGGTGAAGGGCATCTTCTCTAACGTGGGATCCATCTACGCCTTCCACAGCCAGTTCCTGCTGCCGGATCTGGAGACGCGGATGAGCCAGTGGGCCTCCACGCCCCGCATCGGGGACATCCTAGCTCAGCTCGCGCCCTTTCTCAGGATGTACGCCGAGTACGTCAAGAACTTCGACAGCGCCATGGACCTGCTCAAACAGTGGACGGAGCGATCGGCCCAGTTTAACACCATCATCCAGGacatacagAGTCAGGAGGTGTGTGGGAATCTGAGCCTGCAGCATCACATGCTGGAGCCGGTGCAGCGGGTTCCTCGCTACGAGATGCTGCTCAAAGACTACCTGAAGAAACTCCCGGAGGACGACCCCGACCGCAGCCAGGCTGAGAAGTCACTGAACATCATCTCGATGGCTGCCATACACTCCAACACGGCCATCCGCAAGATGGAGAACCTGAAGAAGCTCATGGAGATCTATGAGATGCTGGGAGGTGAGGAGGACATCGTTAACCCGTCCAACGAGCTCATTAAAGAAGGACAAATCTTAAAGCTGGCCGCCAGAAACACGTCGTCCATGGAGAGATACCTTTTTCTGtTTAACAACATGCTGTTGTACTGCGTGCCCAAGTTCAGTCTGGTGGGCCAGCGGTTCACTGTGCGCACACGGGTCGGGGTCCAGGGCATGAAGGTGCTCGAGACCTCTAATGAAGACTATCCTCACACCTTCCAGGTGTCGGGTAAGGAGCGAACGCTGGAGCTGCAGGCCAGCTCACAGCAAGACAGAGAGGACTGGATCAAGGCGTTCCAGCAGACCATTGAAATCTTTCAGCAGAAGAACGAAACATTCAAATCAGCCTCTAAAGAAGTGGCGGATGAGGTTTCTAAAGAGGAGCTGGGGAAGAGAGCCCCGCGCTGGATTCGGGACAATGAAGTGACCATGTGCATGAAATGCAAGGAGCCCTTCAACCCTCTGACCCGCAGGAGACATCACTGCAGGGCATGCGGATATgttgtgtgttataaatgttCGGACTACAAGGCATCGCTGAGGTACGACAGCAACAAATTAAACAAGGTTTGTAAAGACTGTTACTTCATTCTGACTGGAAGAGTGGACTCTGAGGAGCCGGTCAGCGGGAAGAAAAGGGGAATTCTTGAGATTGAAGCAGCTCAGGTCTCAGGAAACAGTTTTCTTTGTGGCTTTCTGCAGTACAGTACAGACCGAACAAAACCGTGTCAAAGGGTCTGGTGTGTAATTCCCCAGCACGACGCGCTCGTTCTTTACCTCTACGGCGCTCCACAGGATGTCAAAGCCCAGTGTACCATACCGCTTCTGGGTTACCAGGTTGAGGACGTCCAGCGCTCTGTGGATCATCCTCCCACCAGCTTCCGTCTGTGCCAGTCCAAATCTGTCCACTGCTTCACTGCCGACACGGAGGAAATGAAACTGCGCTGGCTAAAAGTGATCCGCAAAGCTGTGATCGGTGAGACGCCCGAATGCCAGACGCCGGTCGATGACCTCGCCAACGGTTGCCATGAAGGCACGCCTGATGGCACCTTAAAAGACAAGGCAGTTTTCTAGCTTTTGCATTATGCGTGTAACTCGGCGGAATAGAAATTGTTCATTAGGATGTGAAACCTTCCAGAACAGGTTGGATTTATTTGGGAGCGTATAAGTAGATATgcctttttaatgtattataatgtcAACCACAATcagacagtaaaaacattcagtgtgtgattatttaaatcaataactCAGTTTACGAAAGTTTGTTCGCAGACCAATCTCAGCAAAGTCTGAATAATGCTTTGCGATGTATTAGCCTTTCTCTTTGTGacgtttttaaatttgtatatgCTGTTTGTCGTTTTCAATGTCTCTAAGATTCATGCACTTTATTGCTTTTTGTAAAGTAGgccattaacattaaaatgaatgaataagaaCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36856 lncRNA upstream 240371 649509 ~ 651593 (+) True G24768
TU36846 lncRNA upstream 266739 623251 ~ 625225 (+) True G24758
TU36839 lncRNA upstream 272268 619477 ~ 619696 (+) True G24754
TU36836 lncRNA upstream 276108 615600 ~ 615856 (+) True G24751
TU36831 lncRNA upstream 284450 607287 ~ 607514 (+) True G24746
XR_006250559.1 lncRNA downstream 204571 1112895 ~ 1127380 (+) True LOC122342413
TU37037 lncRNA downstream 339056 1247380 ~ 1249169 (+) False LOC122342481
TU37074 lncRNA downstream 378288 1286612 ~ 1287073 (+) True G24925
TU37102 lncRNA downstream 421141 1329465 ~ 1331843 (+) True LOC122342419
TU37142 lncRNA downstream 648068 1556392 ~ 1557778 (+) True G24968
XM_043236967.1 mRNA upstream 3205 867196 ~ 888759 (+) False LOC122342829
XM_043236947.1 mRNA downstream 9258 917582 ~ 931678 (+) True nampt1
XM_043236948.1 mRNA downstream 25722 934046 ~ 937823 (+) True sypl1
XM_043236945.1 mRNA downstream 30836 939160 ~ 957350 (+) True atxn7l1
XM_043236944.1 mRNA downstream 30836 939160 ~ 957350 (+) False atxn7l1
XM_043237157.1 mRNA downstream 50010 958334 ~ 969359 (+) True znf800b
TU36860 other upstream 226434 654092 ~ 665530 (+) True G24771
TU36683 other upstream 517882 373527 ~ 374082 (+) True G24632
TU36680 other upstream 518140 373527 ~ 373824 (+) False G24632
TU36656 other upstream 596895 293235 ~ 295069 (+) True G24609
TU36577 other upstream 807002 83688 ~ 84962 (+) True G24555
TU37077 other downstream 379988 1288312 ~ 1291224 (+) True ndufa5
TU37269 other downstream 762188 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 875968 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 2207184 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 2211205 3119529 ~ 3306758 (+) False erc1b

Expression Profile