RNA id: XM_043236973.1


Basic Information

Item Value
RNA id XM_043236973.1
length 9418
RNA type mRNA
GC content 0.48
exon number 39
gene id LOC122342833
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5103013 ~ 5194668 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGCTTGTTCTGGATGTTGAGTTAATCATGCTGAGGATGATGGGAAGGTGCCTGACACTCATTTTTCTGTCTGCAGTTGTAATACTCATCACAGCTGACCATGTGAATGTGAGGTTGGTTGATGGTCACAGTCGCTGTTCTGGTCGAGTGGAGGTTCTTCACAGAGGTCAGTGGGGAACAGTGTGTGATGATAGCTGGGATATGGTTGATGCTGAAGTGGTGTGTAGAGAACTGGACTGTGGAGAACCTGTAGATGTTCTGGGTCGTGCTCACTTTGGACCAGGATCAGGACCGGTCTGGATGGGTTTTGTCATGTGTAATGGATCAGAGTCTACGCTGAAGGACTGCTCATCAGCAGGATGGGACCAAAGTTACTGTAATCATGTTAACGATGCTGGAGTAATTTGCTCAGGAGTCAGGCTGGTTGGAGGTTCTCGCTGCTCTGGGAGGTTAGAGATACTTCATGATCAGACATGGATGTCAGTGTGTGAGTCTGTCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGAAGCTGCTTTTGACAAAGGAGACACTCAGATGTGGACACAAGAGATTCAGTGTAGAGGAAATGAGTCTCAGATTCACTTCTGCCCAACATCTCCAtcacataaaaataactgtCCTCATGACAGTCACGTTGGACTGATATGTACAGAAACAAGAACTGTGCGTTTAGTTAATGGTAGCAGCCCCTGCAGTGGGACTGTGGAGGTTCTTCACAGAGGTCAGTGGGGAACAGTGTGTGATCTTGGTTGGGATATGGCCGATGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGAGAACCTGTAGATGCTCTGAGTGGTGCTCAGGTTCGACTCGGATCGGGAGAAGTCTGGAGGAAAAATATAATGTGTACTGGATCTGAGTCTACACTGAGAAAATGTGGATCTGTTATATGGGGTCTTCAAGGTGTGTGTCAGAACAGTGCAGGAGTCATCTGCTCAGGAGTCAGGCTGGTTGGAGGTTCTCGCTGCTCTGGGAGGTTAGAGATACTTCATGATCTGTCGTGGATGTCAGTGTGTGAGTCTGTCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGAAGCTGCTTTTGACAAAGGAGACACTCAGATGTGGACACGAGAGATTCAGTGCAGAGGAAATGAGTCTCAGATTCACCTTTGTCCAACATCTCTGCCACACAAATACAACTGTTCACATGATAATGACATTGGATTGGTATGTGCAGaCCGTGTGAATGTGAGGTTGGTTGATGGTCCCAGTCCCTGTTCTGGTCGAGTAGAGGTTCTTCACAGAGGTCAGTGGAGAACAGTGTGTGAAGCTGGTTGGGATATGTCTGATGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGAGAACCTGTAGATGCTCTGGGTGATGCTTATTTCGGATCAGGATCAGGACCAATCTGGACAAATCGTATTATGTGTACTGGATCAGAGACTACACTGAAGAACTGTGGATCTGTTGAGTTGTATAATTATGACTGTAATCATGATACAGATGCTGAAGTCATCTGCTCAGgagTCAGGCTGGTTGGAGGCTCTCGCTGCTCTGGGAGGTTAGAGATACTTCATGATCAGTCGTGGATGTCAGTGTGTGAGTCTGTCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGAAGCTGCTTTTGACAAAGGAGACACTCAGATGTGGACACGAGAGATTCAGTGCAGAGGAAATGAGTCTCAGATTCACTTCTGTGCAACATCTCCATCACATGATAACAACTACTCTTCTGCATACAGTGTTGAACTAGTGTGTGCAGACCATATGAATGTGAGGTTGGTTGATGGTCACAGTCGCTGTTCTGGTCGAGTAGAGGTTCTTCACAGAGGTCAGTGGGGAACAGTGTGTGATGATAGCTGGGATATGGTTGATGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGAGAACCTGTAGATGCTCTGGGTGATGCTCACTTTGGACCAGGATCAGGACTAATCTGGATAAGTTATGTTATGTGCATTGGATCAGAATCTACACTGAAACACTGTGGCTCAACAGGATGGAGTAAAAGTGACTGTGATCATAACGAAGATGCTGGAGTGAGATGCTCAGAAGTCAGACTGGTTGGAGGTTCCCGCTGCTCTGGGAGGTTAGAAATACTTCATGATCAGTCGTGGATGTCAGTGTGTGAGTCTGTCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGAAGCTGCTTTTGACAAAGGAGACACTCAGATGTGGACACAAGAGATTCAATGCAGAGGAGATGAATCTGAGATTCACCTTTGTCCAACATCTCCATCACATGATAACAACTGTTCAAAATACATCAATGTTAGAATGGAATGTGCTGGTGCAATGAATGTGAGGTTGGTTGATGGTCACAGTCGCTGTGCTGGTAGAGTGGAGGTTCTTCACAGAGGTCGGTGGGGAACAGTGTGTGATGAAGACTGGGATATGGCTGATGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGAGAACCTGTAGATGCTCTGGGTGATGCTCATTTTGGACAAGGATCAGGAACAATCTGGATGAGTGCTTTATGTTCTAGAATGGAATCTACATTGAAGAGCTGTGCGTCAGCAGGATGGGgtatacacacatgtacacataaTGGTGATGCTGGGGTCATCTGTGCAGatCATAAACATTCCAGACTTATTGATGGACCTCACCTGTGCTCTGGGAGAATAGAGATGATTCATGGGAATTCCTGGAGTACAATGTGTGAGTCTGTCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGAAGCTGCTTTTGGAAAAGGAGACACTCCGATGTGGACAAAACAGATTCAGTGTAGAGGAAATGAATCTTATATTTCTTTCTGTCCAATATCATCTCTCAAACATAACTGTGCCCACGAGAATGCCATTGGGCTGTTATGTTCTGGTTACACTGATCTCCGACTGGTAAATGGACCAGACTTCTGTTCTGGTCGAGTTGAACATCAGTATTTCAGTAAATGGGGCACGGTATgtgatgcatgctgggatatgAGAGCTGCCAGTGTCCTCTGTAGACAGCTGAATTGTGGGATTGCTGTGTCTGTTGTGGGATCAGACTGGTTTGGAGAGGGAAGTGGTGAAATCTGGGATGATGTGTTTGATTGTGACGGGAATGAAACAAAACTCTCAGAATGTTTAATCTCTTCATGGAGTCGAGCTGAACATTCTCATAGAAGAGATGTTGGAGTTATCTGCTCTGGTTCCTCTCTGGCTCTTCATGGCGGTCTGGTGCGGTTGTCTGGAGAGAGACAGTGTGAGGGGGAGCTGGAGGTTTTCTTCCATCAGGTCTGGAGGAGAGTTCTGCTGGACTCCTGGAGTCTCACTGAATCCTCTGTGGTCTGCAGACAGCTGGGCTGTGGCTCTGCGCTCAACTTCTCCGGCTCCTCTTCATCCAGTCCTGAACACAGTCATGAGTGTGTGACGGGCTTCCAGTGCTCTGGGAGTGAAGCTCATCTGGGGAACTGCAGCTCTCCACAAACTCTCAACTGCAGCTCCACACAACAGCTGTCCATCACCTGCCTTGGTCGCGGGTCCATCAGGCTGGTGGGTTCTGGGGGAGACTGTGCAGGGAGGCTGGAGGTTTTTCACGGCGGCTCATGGGGGACAGTGTGTGATGACTCCTGGGATATTAAAGATGCCCATGTGGTGTGCAGACAGCTGCAGTGTGGAGTGGCCCTCAGTAACCAGCAGGTACCAGCCTGGTTTGGTCCTGGTTCTGGACACATATGGCTGGATGAGGTGGAGTGTGAGGGGAATGAGACGTCCCTGTGGAGCTGCTCTTCTCCAGGCTGGGGACAACATGACTGTAATCACAAGGAGGATGTAGGAGTCGTGTGCTCAgAGTTTAAAGAGATCAGGTTAACTGAAGGCTGTGAAGGGAATGTGGAGGTTTTCTACAATGGATCCTGGGGTAATGTGTGCTGGAACCAGATGGACAGAGACACAGCGAGTCTGATCTGTCAAGAACTGAACTGTGGAAGATCTGGCAGTGAACCCAGATATTCAGAGGGACTGAAGACTCATGACTGGCTGGATAATTTTAAATGTCGACGACATGATTCTAGTTTATGGCAGTGTCCCTCTTCACCCTGGGGACAGAATAACTGTGATAATGAAGTCGCCAGAATCACCTGCTCAGAGAAGGAGATTCAGGAGCCTCTTCGGAGTCGTCTGAGATGTTCAGCATCTCCTTACCAGAGAAAGTGTTCAAGTCATGTTCCTCTCAGACTGAGTGGAGGTAAGGGCCGGTGCTCTGGGAGGCTGGAGGTGTATCATAACGCTGTGTGGGGCTCAGTCTGTGATGATCAGTGGGACATCAGAGATGCTCAGGTGGTCTGCAGACAGCTGGGTTGTGGAGCAGCACTGAGGGCTGATGGGAATTCAGTCTTTGGTGCTGGTGAAGGTGTTGTGTGGATGAACAGAGTCGAGTGCAGAGGGAATGAGATTCACCTGTGGGACTGTCCTCTCTCCCTGAAAAACCACACTGACTGCTCCCACAAAGAGCACGCTGGACTCACCTGTGCAGATGTTTCAGATGTGTCAGTGTCCTCTACTCCTGACACAACAACATCAGTTTCTCCTCCAGTTTCTCCTCCAGTGCGCTCAACATCAGTCTCTCTTTCACAAACTCCTCCAGCAGAGTCTCTCTCCGTCTCCCCAGAGCTTGTGATTGTTCTGGGAGTTGTGCTCTTACTGCTCTTAGTGCCACTGCTTATACTGATTCAGCAGAACAGAGTGATGAGGAGAGCTCTCTCTGACTGGTACACAGGACTTCACAGGACTCAGTCACAGACTGAACCAGTATATGAGgaaatttataataatcagcTTACTCATAGAGGTAGTCTTGTCTCTGAAGACACTGATGAGCTTCTCTCAGAGAGGGTCAATGAAGTCACACCAAGATTGTATGAAGACATCTTCACCGGTGCACCGATACGAGATCGTGAGACAGATGACACACCAGAGGGATATTATGATGTCATTATTACTGGACAGAGCTATGATACTGAAAAAGcggaCACACCAGAGAACTATGATGATGTCGTCATTAATGAACAACGCTCTCAATGTGTAACAGAAGGAGATCAGGAGGAGTATGATGATGTGTGGAGTATCACTGAAGATGTGACAAACCTGTTAGactACGACGATGTGAGGGAGGAGTCAGACATTGAGGGAGGAGCCCAGGACTGGTTGGAGGTTCCCGCTGCTCTGGGAGGTAACAGCGAGTGTGATTGGAGGGTGTTTCTCTCATTAAGAGGATGCCTGTACTTCTGTATCATCAGTGCGGAGAAGCTTGTTCTGGATGTTGAGTTAATCATGCTGAGGATGATGGGAAGATGCCTGACACTTATTTTGCTGTATTCACGTGTAATACTTATCACAGCAACTCATGTGAATGTGAGGTTGGTTGATGGTCCCAGTCCCTGTTCTGGTCGAGTGGAGGTTCTTCACAGAGGTCAGTGGGGAACAGTGTGTGATGATTTCTGGGACCTTAAAGATGCTTCAGTGGTGTGTAGAGAACTGGACTGTGGAGAACCTGTAGATGTTCTCAGTGATGCTCATTTTGGACAAGGATCAGGACCGGTCTGGATGAGTTTTGTCATGTGTAATGGATCAGAATCTACACTCAAGAACTGTGGGTCATTAGGTTGGGGTAAAAGCAGATGTCATCATTTCAAAGATGCTGGAGTCATCTGCTCAGGAGTCAGACTGGTTGGAGGCTCTCGCTGCTCTGGGAGGTTAGAGATACTTCATGATCAGTCGTGGATGTCAGTGTGTGAGTCTGTCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGAAGCTGCTTTTGACAAAGGAGACACTCAGATGTGGACACGAGAGATTCAGTGCAGAGGATATGAGTCTCAGATTCACTTCTGTCCAAAATCACTATTAGTTAAAACCAGCTGTTCTTATGAGCGCACCATTGACTTAATGTGTTCGGACATAATAAATGTAAGACTAGTAAATGGTCCCAGTCACTGCTCTGGCACAGTGGAGGTTCTTCACAGAGGTCAGTGGGGAACAGTGTGTGGTGCTGGTTGGGATTTAGCTGATGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGAGAACCTGTAGATGCTCTGTATGTTGTTCACTTTGAACCAAGATCAGGACTGGTCTCAATGAAAAATGCAGCGTGTACTGGATCAGAGCCCACacttaagaaatgtgcattcgTAAAATCAACTTATCCTGATATTTGTCTCGATAAGAATGCCCATGTCATTTGTTCAGaagtcaGACTGGTTAGAGGTTTTCCCTCTTCTGGGAGGTTAGAGACACTTCATGATCAGACATGGGATTTACAAGAGATTGAGTGTACAGGAAATGAATCTCAGATTAATCTCTGTCCAACATCACCATCACATGAAAACAACTGTTCTCATGAAAGTCGTGTTGGACTGGTGTGTGCAGATGTTATGAGAGTAAGGTTGGTTGATGGTCCCAGTCGCTGTGCTGGTAGAGTGGAGGTTCTTCACAGAGGTCAGTGGGGAACAGTATGTGATATTGGTTGGGATATGGCTGATGCTGCAGTGGTGTGTAAAGAACTGGACTGTGGAGAACCTGTAGATGCTCTGGGTGATGCTCACTTTGGACCAGGATCAGGACCAATCTGGTCAAATCGCTCAACATGTACTGGATCAGAGTCTACACTCAAGAACTGTGGCTCAGTAGAATGGGGTATTTATAACTGTGATCATACTAGAGATGCTGGAGTCATCTGCACAGGTAAGCTGTTCAAAAACCTGCCCTGTATTTACATCACTAATGATCATCCtgctttaaagggacagttcaccaaaaattacaattatgtaatttactcatattcatGCCTCAGACTTACTAAAAAACTGAGTTGCTCTGGGAGGTTAGAGATACTTCATGATCAGTCGTGGATGTCAGTGTGTGAGTCTGTCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGAAGCTGCTTTTGACAAAGGAGACACTCAGATGTGGACACGAGAGATTCAGTGCAGAGGAAATGAGTCTCAGATTCACCTCTGTCCAACATCTCCATCACATGATAACAACTGTTCACATGACAATAACCAAGGGATGCTGTGTGCTGATAAAAAGAATGTAAGGTTGGTTGATGGTCACAGTCGCTGTGCTGGTAGAGTGGAGGTTCTTCACAGAGGTCAGTGGGGAACAGTGTGTGATCTTGGTTGGGATATGTCTGATGCTGCAGTGGTGTGTAGAGAACTGGACTGTGGAGAATCTGTAGATGCTCTGGGTGGTGCTCACTTTGGACCAGGATCAGGACCAATATGGATGAGTCTTGTTTTATGTACTGGATCAGAGTCTACACTAAAGAACTGTGGCTCATCAGGATGGAGTAAGCATGACTGTACTCACAATTCTGATGCTGGAGTCATCTGTTTGGGTGATAAACCTTCCAGACTTGTTAATGGATCTCATCGGTGTGCTGGGAGATTAGAGATAATGGAGGATCAGTCATGGATGTCAGTGTGTGAGTCTGTCTTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGTACAGGTGCTGAGAGAAGCTGCTTTTGACAAAGGAGACACTCAGATGTGGACACGAGAGATTCAGTGCAGAGGAAATGAGTCTCAGATTTCATTTTGCTCAATATCATCATCGCACAAACACAACTGCAGCAGTGAAAACATTGTAGAACTGTTCTGTTCTGGTTACACAGATCTCAGACTAGAAAACAGTTCAGATTCTTGTTCTGGTCGAGTTGAGCATCTGTACTTCAGTAATTGGGGCACAGTGTgtgatgcatgctgggatatgAGAGCTGCCAGTGTCCTCTGTAGACAGCTGAATTGTGGGATTGCTGTGTCTGTTGTGGGATCAGACTGGTTTGGAGAGGGAAGCGGTGAAATCTGGGCTGATGTGTTTGATTGTGACGGGAATGAAACAAAACTCTCAGAATGTTTCATCTCTTCATGGAGTCGAGCTGAACGTTCTCATAGAAGAGATGTTGGAGTCATCTGCTCTAATTCCTCTCTGGCTCTTCATGACGGTCTGGTGCGGTTGTCTGGAGAGAGACAGTGTGAGGGGGAGCTGGAGGTTTTCATCCATCAGGTCTGGAGGAGAGTTCTGCTGGACTCCTGGAGTCTCACTGAATCCTCTGTGGTCTGCAGACAGCTGGGCTGTGGCTCTGCGCTCAACTTCTCCGGCTCCTCTTCATCCAGTCCTGAACACAGTCATGAGTGTGTGACGGGCTTCCAGTGCTCTGGGAGTGAAGCTCATCTGGGGAACTGCAGCTCTCCACAAACTCTCAACTGCAGCTCCACACAACAGCTGTCCATCACCTGCCTTGGTCGCGGGTCCATCAGGCTGGTGGGTTCTGGGGGAGACTGTGCAGGGAGGCTGGAGGTTTTTCACGGCGGCTCATGGGGGACAGTGTGTGATGACTCCTGGGATATTAAAGATGCCCATGTGGTGTGCAGACAGCTGCAGTGTGGAGTGGCCCTCAGTAACCAGCAGGTACCAGCCTGGTTTGGTCCTGGTTCTGGACACATATGGCTGGATGAGGTGGAGTGTGAGGGGAATGAGACGTCCCTGTGGAGCTGCTCTTCTCCAGGCTGGGGACAACATGACTGTAATCACAAGGAGGATGTAGGAGTCGTGTGCTCAGAGTTTAAAGGGATCAGGTTAACTGAAGGCTGTGAAGGGAATGTGGAGGTTTTCTACAATGGATCCTGGGGTAATGTGTGCTGGAACCAGATGGACAGAGACACAGCGAGTCTGATCTGTCAAGAACTGAACTGTGGAAGATCTGGCAGTGAACCCAGATATTCAGAGGGACTGAAGACTCATGACTGGCTGGATAAACTTAAATGTCGACGACATGATTCTAGTTTATGGCAGTGTCCTCTTCACCCTGGGGACAGAATGACTGTGATAATGAAGTCGCTAGAATCACCTGCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38906 lncRNA downstream 8499 5093791 ~ 5094514 (-) False LOC122343483
TU38905 lncRNA downstream 16074 5085836 ~ 5086939 (-) False LOC122343483
TU38793 lncRNA downstream 94015 5008626 ~ 5008998 (-) True G26121
TU38776 lncRNA downstream 156952 4944128 ~ 4946061 (-) True G26109
TU38754 lncRNA downstream 174308 4920806 ~ 4928705 (-) True G26100
TU38925 lncRNA upstream 45663 5240331 ~ 5241780 (-) True G26237
TU38983 lncRNA upstream 147830 5342498 ~ 5344870 (-) True G26270
TU38984 lncRNA upstream 152117 5346785 ~ 5347055 (-) True G26271
TU38994 lncRNA upstream 192098 5386766 ~ 5389185 (-) True G26281
TU38998 lncRNA upstream 213959 5408627 ~ 5410039 (-) True G26285
XM_043236960.1 mRNA downstream 112 5100364 ~ 5102901 (-) True LOC122342827
XM_043237970.1 mRNA downstream 8373 5085090 ~ 5094640 (-) True LOC122343483
XM_043237960.1 mRNA downstream 19338 5077652 ~ 5083675 (-) True LOC122343475
XM_043237789.1 mRNA downstream 79422 5009871 ~ 5023591 (-) False ppfibp1a
XM_043237968.1 mRNA upstream 2378 5197046 ~ 5201684 (-) False LOC122343482
XM_043237967.1 mRNA upstream 2378 5197046 ~ 5201684 (-) True LOC122343482
XM_043236974.1 mRNA upstream 6940 5201608 ~ 5205321 (-) True LOC122342834
XM_043236975.1 mRNA upstream 12406 5207074 ~ 5216162 (-) True LOC122342835
XM_043237942.1 mRNA upstream 29570 5224238 ~ 5235056 (-) True prmt8b
unassigned_transcript_303 other downstream 337846 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_302 other downstream 338073 4764853 ~ 4764940 (-) True trnay-gua
XR_006250792.1 other downstream 345186 4731224 ~ 4757827 (-) False LOC122343492
TU38442 other downstream 835518 4264926 ~ 4267495 (-) True G25880
TU38194 other downstream 1498743 3602358 ~ 3604270 (-) False LOC122342823
unassigned_transcript_305 other upstream 522378 5717046 ~ 5717133 (-) True trnay-gua_3
TU39166 other upstream 524344 5719012 ~ 5720250 (-) True G26405
TU39169 other upstream 535350 5730018 ~ 5736946 (-) True G26408
TU39171 other upstream 535350 5730018 ~ 5736946 (-) False G26408
TU39173 other upstream 535350 5730018 ~ 5736946 (-) False G26408

Expression Profile