RNA id: XM_043237008.1


Basic Information

Item Value
RNA id XM_043237008.1
length 2933
RNA type mRNA
GC content 0.54
exon number 22
gene id LOC122342860
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9723107 ~ 9743552 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGAGGAGAGACATGGCAGTATAGAGGAACGTATGAGACATTTAGAGGGACAGCTGGAGGAGAAGAACCAGGAACTGCTCAGGGCTcgacagagagagaagatgaaTGAGGAACACAACAAGCGTCTGTCGGACACCGTGGACAGACTCCTGACGGAGTCGAATGAACGTTTACAGCTTCACCTGAAAGAGAGAATGGCCGCTCTTGAGGAGAAGAACGTGTTAATACAAGACTCTGATAACTACAGGAAGCAGCTAGAAGACTCCATACAAGAAAAGTCTCATCTCTCGGAGGAGATCGAGAAAATGAGATCTGAACTGGATCAGTACCGATTGAGGGCCGGATCCCTTACTGAGCCCACGCTGTCACGGTCTCATCTGGATGCATCAGGAGATCTGCGTTTCTCTCTGGGTTCTCTTGCCGAGACTCAATCGGACCATTATCGCTCCACCAAGGTGATCCGCAGGCCAAGGAGAGGACGCATGGGGCTACGTAGGGACGAACAGAAGGCTAAGTCTCTGGGAGAGCATGAATGGCGCTCTCAGCAACTTGGCGTTCTGGGCGGCCACCCGTTCGAGAGCGACACTGAGATGTCAGATATAGATGACGACGACAGAGAGACCCTTTTCAGTTCGATGGATCTACTGTCTCCTGGAGGACATTCCGATGCTCAGACTTTGGCAATGATGCTGCAAGAACAACTGGATGCCATCAATAAAGAGATCCGGCTGATCCAGGAAGAGAAAGAGTCGACAGAACTGAGGGCAGAGGAAATCGAGAACCGCGTGGCCAGCGTGAGCCTGGAGGGGCTGAACCTGGCGCGGATGCACCATCCTGGAGCCTCCATCACTGCCTCGGCCACCGCATCCTCCCTCGCCTCCTCCTCCCCTCCTAGCGGACACTCCACCCCCAAACTCACCCCGCGCAGCCCTGCCCGAGACATGGAGCGCATGGGGGTCATGACACTGCCCAGTGACTTGCGGAAACACAGGAGAAAGATCGCAGCGGTGGACGAGGACGGTCGAGAGGACAAGGCCACCATCAAATGCGAGACCTCGCCACCTCCCACACCTCGCCAAGTCCGCATGACCCACACGCTGCCTGCTTCTTCGCACAATGACGCACGCCTGACAGCTGCATTAGAGACGGAGGCCAGTGCTCTGAGCAGCGTAGCCAGCAGTCAAGACTCCCTCCATAAACAGCCAAAGAAGAAGGGCATCAAGTCCTCCATCGGACGCCTGTTTGGGAAGAAAGAGAAGGCCAGACTGGGGCAGCTGGGGAAAGAGATTATGGGACCAGGACAAGGGAATGTATCCGATCCTGAGCTTCTAGGTCAGGATATTGCTGTGGGAAAGCTGGGAACGCAGGCAGAGAAAGATCGCaggcttaaaaaaaaacaCGAGTTGTTGGAAGAAGCCAGAAGAAAAGGGTTACCTTTTGCTCAGTGGGACGGTCCTACAGTTGTTGCGTGGTTAGAGcTTTGGCTAGGGATGCCAGCGTGGTATGTCGCAGCTTGTCGTGCCAACGTAAAAAGCGGCGCCATCATGTCGGCCCTGTCGGACACGGAGATCCAGAGAGAGATCGGCATCAGCAATCCTCTGCACCGCCTCAAACTGCGCCTGGCCATCCAGGAGATGGTCTCGCTCACCAGCCCTTCAGCTCCTCCTACATCTAGAACCCCGTCGGGTAATGTGTGGGTAACCCACGAGGAAATGGAGACCCTTGCCGCCCCCTCCAAAACGAAATCAGAGTCAGAGGAGGGGAGCTGGTCCCAGACGCTGGCATACGGGGACATGAACCACGAGTGGATAGGGAACGAGTGGCTGCCCAGTCTAGGTCTACCTCAGTACCGCAGCTACTTCATGGAGTGTTTGGTGGATGCACGCATGCTGGACCACCTCACCAAGAAAGACCTCCGAGTGCATTTAAAGATGGTGGATAGCTTTCACAGAACCAGTCTGCAGTACGGCATCATGTGCCTAAAGAAGCTCAACTACGACAGGAAGGAGCTAGAGAGACGCAGAGAGAGCAGCCAGCATGAGATAAGAGACGTGCTGGTGTGGACTAACGAGCGCGTGATTCGCTGGGTCCAGAGCATCGGTCTCCGTGACTACGCCAACATCCTGTTAGAGAGCGGCGTGCACGGGGCGCTCATAGCACTCGACGACAACTTTGACTACAGCAGCCTGGCCCTACTGCTGCAGATCCCCAACCAAAACACTCAGGCTAGACAAATTCTGGAAAGAGAGTACAACAATCTGCTGGCGCTGGGAACGGAGAGACGATTAGATGAGTGTGACGAGAAGGACTTCCGAGGACCGTCGTGGAGGAGGCAGTTTCCTCGCCGGGACATCCACGGGATCAGCATGATGCCCGGCTCAGCAGAGACCCTGCCCGCCGGCTTTCGCCTCACTGCCACCTCCGCACACTCACGCAGACTGCCACCAGAGGTTGGACCGTCGGCGGTACAGCGTCTGGACAGCTCCACTGTGAGGACCTACTCTTGCTGAGACAACATCAATACTATAAGCTAGTCGTACCTTAAAGTTGGCCTGAACAAACTATTGCGACGACACACACTGCCAAGAGAACAACAGAAGGCCACGGAGGACAGGGCCAGGAGCCTGGGGCCGAACGAGCCGAGGCCTCGACCCGGGCGTCCGCCGATGTGCTCTcgctctttctgtctttcacGCCACGCGGCTCCTTCGGCTTAAGTACTGTGTATTTCTTCTACAGGGGATGTGTAGGTTCAACTGTAAATCACtataaataaagctgttttatatataaagacataaatataaagaaatatatatgcatacacacatctGTATAAAAAGATCACACGTTTGTGCACATTGCGTCCTTTAACGTCATGGTTTTAAACGATGCTGCTGTTTTAACTTTTCGCCTACGCCCCGGAGACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250603.1 lncRNA upstream 49973 9660487 ~ 9673677 (+) True LOC122342587
TU40761 lncRNA upstream 166932 9554960 ~ 9556718 (+) True LOC122342620
XR_006250619.1 lncRNA upstream 167433 9554973 ~ 9556217 (+) False LOC122342620
TU40744 lncRNA upstream 186563 9536610 ~ 9537087 (+) True G27498
TU40618 lncRNA upstream 215722 9504080 ~ 9507928 (+) True wnt7ba
TU40944 lncRNA downstream 414607 10158159 ~ 10257553 (+) False G27629
TU40958 lncRNA downstream 519317 10262869 ~ 10264200 (+) True G27643
TU40968 lncRNA downstream 543926 10287478 ~ 10365571 (+) True G27651
TU41051 lncRNA downstream 735889 10479441 ~ 10494449 (+) False lrtm2a
TU41078 lncRNA downstream 905140 10648692 ~ 10659331 (+) True G27731
XM_043236982.1 mRNA upstream 1184 9715610 ~ 9722466 (+) True LOC122342846
XM_043236524.1 mRNA upstream 69270 9643462 ~ 9654380 (+) False impdh1b
XM_043238017.1 mRNA downstream 340048 10083600 ~ 10088337 (+) True lrrc4.1
XM_043238028.1 mRNA downstream 417595 10161147 ~ 10164486 (+) True pax4
XM_043238035.1 mRNA downstream 622160 10365712 ~ 10367925 (+) True lamtor4
XM_043238019.1 mRNA downstream 625787 10369339 ~ 10374317 (+) True gcc1
XM_043238016.1 mRNA downstream 639067 10382619 ~ 10397829 (+) True ppp6r2a
TU40736 other upstream 133332 9587319 ~ 9590318 (+) True G27490
TU40764 other upstream 145076 9577315 ~ 9578574 (+) True G27508
XR_006250785.1 other upstream 328922 9381542 ~ 9394728 (+) False cfap54
TU40537 other upstream 541418 9168776 ~ 9182232 (+) False G27360
XR_006250548.1 other upstream 1180938 8533816 ~ 8542712 (+) False etnk1
TU40943 other downstream 414607 10158159 ~ 10203768 (+) False G27629
TU40942 other downstream 455094 10198646 ~ 10203768 (+) True G27629
TU40966 other downstream 622200 10365752 ~ 10367912 (+) False lamtor4
TU41104 other downstream 955994 10699546 ~ 10700125 (+) False zmp:0000000650
TU41106 other downstream 964087 10707639 ~ 10708872 (+) False LOC122342850

Expression Profile