RNA id: XM_043237015.1


Basic Information

Item Value
RNA id XM_043237015.1
length 8657
RNA type mRNA
GC content 0.47
exon number 62
gene id utp20
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2001089 ~ 2022310 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAGATGGTGGCCTCCTGATACGGCATGTGTATCAACAATTTCACAGCCGTTGATAACGTATCTTACCTTTAAAATCACGGGATATACACAACTTTTGTATTTGGTAGTCTGATAATACATCAAAATGAAGCTCAAAGTCAAGCCCCAGTctcataaatcagaaaacacTTACCGCTTTATCACGTTTTCTGAGAGGCTCGCAAAAGTAAACATTGATGTCATTCATCGCATTGACAGGTCTGGAAGTTATTCAGAGGAGGTAGaaacttatttttttgaagCCCTGTTAAAATGGAAAGACCTGAATTTGACAGAACACTTCAagattttttttcaagagGTGTCAAGCAAGAGTCAGTCATTCAACATGCTGGTGTTTCACCAAAATGCTATCGTGGAGAGTCTGAAGAGTCACCTGTCAGTGAAGAACAGCATGGCTGTCCAGCCTCTTCTAGATCTTGTAGTTCAGCTGGCTCGTGATCTCCAGATGGACTTTTACCCTCACTTCTGCAACTTCTTCACCATCATCATGTCTATACTGGAAACACAAGACACTGAGGTCTTGGAATGGGCCTTCACATGTCTGTCATACCTGTACAAATACCTGTGGAGGATCATGGTGAAGGATATGGACAAGATATACAGTCTTTACAGTAAACTTCTGGCGCACAAAAAGGAACACATCCGCAACTTTGCTGCTGAGAGCTTCTCTTTTTTGATGAGAAAGGTGTCCGATTATGATGCTCTCTTCACACTTATTTTCTCCAAACTGAAAGAGAGCCCTCAGAAAGCCAGAGGAGCAGGTCAGCTGATCTTTGAGATGTGTCGAGGAGTCTGTAACATGTTCCACTCCTGTGCCACTAAGGCTCTTCCAGTGGCATTGCAGAAACTTGGCCCAGCAGCCGGTCAGGACCTTGATCTACCCTGGGATTTGGTAAAAGAAGCTCTGGACCACATGGCTCAGTCTTCAGCCAACTATGTTGACAAAGAGCACCTGCTGGTCCTGTGGGACTGTTTACAAgTCTCTCTGAAAGAAGTTCTTGGAAAGTTAGAGACCAGCAATGATGATAAAGCAAGTGAGCACCTTGAGAGGATTCTGTACATCTACCACACACTTGTAGAGCATCACAAAGGAGAAAAGATCACAAAACCACAGTCTGTTTGtgagaCACTTCTTCAGCTAGTTCAGGCACCAGGACTGTCCTACTCCTGCCAAAGGCTGGTTTTACAAGTAGTCTCTGCTCTATTGATGGGGGAGAATCTGTCATTATCTGCCAGCAGCATCCATGAACTGGTGAAAAAGGTCTTCAACAGCAGCATGGACAGAGACCTCATGTTATCATTTGCCAAAGAGATGTTTGACATGAAACAGTTCGAGCAGttGCTCTTACCCAGTTTGCTGCATTATCTGGAGCATCTCTTCTGCATGGAGGACTCAGTAAACCGACAGTTGGCTCTGGAGCTGCTGATTGGTCTGATTCTGTCCAAAGCTCCGCCCCCCACTGACGGCTTCATGGCTTTTGAGAAGTATCCATTGATCTTCAGTGGACAGACTCTCAGGTCAACTGGACCTGAAAGAGAACAGGTAGTCTCTGTTCCCGAGAAGATTCTATCTCTCATAGACATCCCTGCTGATCAGCCACTCTCTGATCTTTCCCATCCCTGGGCTGCCCTGGTGCTGCTCCCACATGTCAGACCATTAGAAGCATCAAGTGCTATACCGGCCATCACTGCACTACTGAACAGATTACTGCAAGAGGTGTGCAGTGAAACTCTGGGGAGAGGAGGGCTGTTTGTAGCACGACAGGCACTAAGCACCCTGCTCAGCTTCAAGGAGACAGCAGCGGTACAGTCTCTCCTGCCTGGAGAGTTGGTCAGAAGCATCATAGAGAAGTTCCCAACTGATCTTTCAGCGCTGCTGTTAGGAGATCTGTACTACACCAGACTGGCACTCAACGGCTGCTCGGCTCAGCTGTCTAATGATTCTCTCCTGGAATTGTACCAGATACTACATTCCAATTTTTCTTCCAACATTTCCAAGATTCGTTTGCTGACCCTCAGAATTATGTCAAACTTTGAGGCTGATCTTCCGAAGCCAGCCGAGGGAGAGGAGAGCTCAAATGTGCAGACGGTGTTCGCCGTGTGTCTGCAGGCAGAGCAGGTCCCTGCTACAGTGCAGGACTACAGGGAGAAGCTGCTACATCTTCGTAAACTCCGTCATGACCTAGTGCAGCCCTGTTTACCCAAGGGACCTTTCCATGAGGTTCCTCTTCGTTACCTTATTGCAATGTTGTTTGTCAATTTTCGACCCCTCTGGGATGCGGTTATTGACCTGTTGGTGACCCATGCTAATGAAATGGACAACAAGTCTTTCTGGAAGGTCTATTATGAAAATCTGGAGATGGTTGCTGATCTAGCTGAGAAAGAGCTTCAGgcagatgaagatgatgatgaagagggAGGCAGTGAACAGCATCAAGCTACGAAGCAGCTTCGAGGTCCAGGAACCAGTGTGATTGAAAGCGGGGATGTGGGAGTTTTGTTTCTAGAACAGCTGGACCATGTGCTGAATTCTGTTGAGCGGACAGACTTCACAAACTTCCGCAGCCTGCTTTGGAGAATAATGTCCCAGTTTCCCAACAGAGTGGAGCCACGCAGCAGAGAGCTAACTCCGTTACTGCTACGCTTCATTAGTAATGAGTTCTACCCAGCTGACCTGCAGGTGGCTCCCACACAGAACCTCATAAAGAACTCCACAACAGAGCAGGAAAATGGCGAAGAGGTAGATGCTGACATGGAAGAAaatgaagaagaggaagaagattCCAAACAAACCAAGAAAAAGATCCCTAGAAAAGCAGCAGCCAAGCAGCTCATTGCACACTTGAAGGTCTTTTCCAAATTCACCAACCCAAAGGCTTTATATATGGAGGCAAAATTGAGTGAACTGTACAACAAACTTCTGTGCCATAAAGACCAACAAATCCAGAAAATAGCACTGGAATGTTTGATGACATACAAAGACCCAAGCGTTCTGCCTTACAAAGAGAATCTGGAGAGACTTCTGGATGACAAGCATTTTAAGGATGAGATTGTCCATTTCATTATCTCAGAGCAAGGAGCTATGGTACTTCCGTCGCACAGACCTCAGCTCATTCCCATCCTTATGAGGATACTGTATGGGCGGATGTGCCCTAGGGTTGGGAATAAGTTCCAGGGTAAGGCGAACACAGCTTCACGGTCCTCCATAGTGCTGCGCTTCCTGGCAGGCTGTCAACCAGAGGAGTTGGGCATGTTTATAGATCTTCTGCTGGAGCCTGTTTGTCATCATGCTGAAGGAGCGTGTCTGGCTGCAGTAGAACGAGCTGTAGCTGAGACGGACCTGTCTGCTGTTCTCCCTTTGGGACGCCAGCACAGCCTGCTCAACACCATAGAAATGATCATCCATAAAATGGGCCATCTCATCCACATCTACTTGCCCAAAGTTCTGCAGATCCTGCTGTGCATGATGGCCTCAGTGTCATTTATACTGGATCACAGAGAACAGCTCAAACCTGGTTGCATCAACCCTCTAAAGAACTTACGCCGTCTGGGGATTCTGCGCATACAAGACTTCTTTGATGACTTTGAATCTTACAACTTCACTGCAGATGAGCTGGATGCAGTGTTTCAAGCCGTGGTGTGGCCTAAGGTGTGTCTTTTGTCTACTGAAAGCACATATTCACCAACTACCCTTTTGAAAATCATTCGTGTATGGAGCCAAAATCCTAGATATTTTCCTTTGCTGGCTAAGCAGAGACCGGACCACCCTGAGTGTGACGTCCTGCTCAATGTATTTGCTCTGTTGTCATCCAAAAATGTGTCTGCCATCACAACGACAGTGGTGGTGGATATAGCCGAATGCTTGCTAACCACTCCAGACTATGAACCCAAGGAGAACGAATCAGAGCTGATTGTGAACGACTGTATGGTGCCCAAACCCGATCAGAGCCAAGATGTGTCAGATTCTTTGACTATCGGCTGTCGCCTGCTGCTTCCCCACATCCCAGCACTCCTTAAGTACCTCAGCGGAGTCGTATGTGACTCTGAACgcctaaaaaagaaaaaattcagAGCTCAAGTCAGCAAAGAGCTCAACATCCTCTCAAAGATCAGTAGATTCGTCACTGAAAAAGAACATAGTTCAACACTGATTGGTTTGCTTCTGCCTTACCTTCACAAACCCAAAACTGCTGAGgaaacagAGCTGGATATCCTGGGTACGGTGAAAAACCTGCTAAGACAGTGTAAAGAGCCTAGTATGTTCCTCAAGCCTCTCAGCAAGCTTTTCTCCGTCATCCAAAACAGACTCTCCCGCAAAGCTCTGTGTGAAGCATTTCAGACTCTGTCAGACATGGACGGTGAAATGAAGTACATCACAGACGTTGTGATTGAGCTCAATATGTTTGATAGCCGCCATCTGGACGTGATTCACTTTGACGTACGTCTCATGGCATTCCAGAAGGTCACCAAGCACATTAAAGAGATGAGTCTTCTGGATATGAGATACCTGACTGCTATCATTCACAACTGTTTCCATTCTATAGAGATCGGTGACATGTCTCTGGCAGACAGCGGCACCATGTGTTTATCAGCTATAATAACACAGCTTTCTGAAGTTGGATGCCCAGAAGCAGAGTACAAGGAGATTGTGCAATACATGATACTGGATGCAATAAGAAAGGGTTTGAAGAGCAAGACTGAGaGTATACGAAATGATTACACTACGGTTCTGGCCTGCCTGGTGAAGACCTTCCCAAACCGACCAGAGTTTTGTGATCTGGTGCAACTGACGGACTATAATGATGTCGAGTCTGATTTCTTTGAGCATATGAAGCACATACAGGTTTACAGGAGGGGTCGAGCGCTCAGAAAGTTCGCCAGGCAGCTGACTGAGGGCACAATTGTGATGTCATCACGCTCCATGCAGAATTACATCATGCCCTACGCCATGATCATTCTGGTTGACGAAAAACTGCTGAAGTATGAACCCATGACAACAGCCGCCATAGAAGTTATTGGTGCCGTGTGCAAACGCTTGACCTGGTCCAAGTACTTATTCTACCTCAAACACTTTGTCCATGTTTTACAAACTGGATTAACTGAGCAGAAAATGGCTGTCAGCTTGTTGCTGACCGTTCTTGATGCGTTCCACTTTGACCATGAGACCCTCAGTAAAGAAATCGGGGCAGctaagaaaaagaagaagaaagatgAGCCCAGTGTTTTGGTGGAAGAAGCTGAAGACGAGGCACTGGAAACCATGGAGATAGATGAGAGTGATGCTGAGGATGCCATGGAAACCGATGAACCTGGAGCAGCTGTTTCCACGGCCACAGACGCTGAGGCGCAAGGCCCTGCCAAAcccaaagaaaagaaagacagtCAGATGAAGAAAGTGCTTCCTGTCGTTAGTAGTGGCCTTCCACACAGCCAACAGGAACTAGAGGCACTCATTTCCAGCATTCATCACACGGTCACTCAGACCGTCCTGCCCAAGCTTCACAAGTGCCTCACAGCAAAGGTTAAAAGAGATGACGAGCACAAGACGGTAAAGTCTAAGGAGGTGAAAGATGAAGAAGTTGTCCGAGTGCCTATTGCATTTGCCATGGTTCAGCTCATGAAGTCTCTGCCAAAGGAGGTCATGGAAGCCAACTTGCCGGGTATCTTACTGAAAGTGTGCGTTCACCTGAGGAGCCGTTTCCAGGAGATCCGTGATGTTGCTCGAAACACTTTGGTGAAGATCATAGAGACACTTGGGCATCAGTATCTTCATTATCTGCTCAGTGAGATGCAGGCGGTTTTAGTGAAGGGGTATcagGTCCATGTTTTGACTTTCACCGTGTACCATTTGCTCTCTATCTTAAAACCATCCTTGACCGGAGGAGATCTCGACCCATGCATGGACATGCTCATCACGATCTTCAACAACGAGTTATTTGGAGCTGTAGCTGAGGAGAAGGACATCAAAGGAATTGCTTCCAAAGTGATGGAAGCCCGTCACAGCAAGAGCTCCGAATCGTACGAGCTCCTCGGCCAGTTCTGCGGTCAGGAGCGCATCATTCACCTCATCCTGCCACTTAAAGAGATACTCGAGAACTCAGCCAGCCTGAAGGTGTCGAGACGAGTTCATGCTGTGCTCGGGAGGATTGTGGCGGGACTTTTGCTCAATCAGAGCATGAGCCCTCAGTCTATCTTACTGCTCAGCCACGGACTCATCAGTGAGAGCCTGCCACTTATTACCACCAAAAACAAAGAGAAGCAGCGTCCGCCTCCAGACCCTCGCCTGCCTCTGCCGAGCTGTTTACTGCTGCCAGCCACTCCTAAGAGAGGAGGAGCGAAAGCCGCCATCAGCAGCAGAACAAACATGCACATCCTGGTGGAAACAGGTCTCAGTTTGCTTCACTGTAGTCTGAAGAGTTCGAAGATTAACTCATCTAATCCATCAGTAAAGGAGATGCTGGATCCTTTCGTATCTCTCCTCCTGGACTGTCTTAACTCCATGCATGTGAAGGTGATCAGCGAGGCCTTGCAGGCGTTCATCTGGATCCTGAAGTTTCCTCTGCCGGCGGTGGGGCAGAATTACGACCAGCTGACCAAGCAGCTCTTTGTCCTGCTGAAGGACTATGCTAAAGCCGGAGTCGGCCGTGGAGAAAACTTCCACCTGGTTCAGAACTGCTTTAAGGCCATTTCCGTTTTGGTGAAGAGCGTGACAAAACCTATAACAGAAACACAGCTGCAAGTGCTTCTGGGATATGCTGAGGAGGACATTTATGATAACTCACGGCAAGCCACAGCATTCGGCCTCCTGAGGGCGATTCTCTCCAGGAAACTGGTGGTGCCGGAGATGGAGGATGTTATGAAAAAAGTGGCCAAGTTTGCCATCAATGGGTCAAACGAACAGGTCCGAATGCGCTGCAGACAGATCTATCTGAAGTACCTGATGGACTATCCACTGGGCAAGAAACTGAGGAAACATTTTGACTTCATAGTGGCTCAGCTTACTTATGAATATGACACTGGGAGACAGTCTGCCCTGGAGTTCATGGCTTTCATTTTCCAGAATTTTCCTCAGGCTCTATTGCATCAGCACTGCGGTTTATTTTTTGTGCCTTTGTCGCTGGCTGTGTTGAACGATGATTCTGCGACCTGTAAGAAAATGGCATCTCTGGCCATCAAGTCTCTGCTGAGTAAGCTGGATCTGCAGCATCAAAATTCCATGTTTGACCTGGTTAACACCTGGCTTACGGGCGAGAAGGCTGCTCTGAGGCGACTGGGAGCTCAGGTTTGTGGGCTGTTTGTGGAAGTTGAAGGGGAAAAGTTCAACCGGAGACTGGACGCCCTGATACCTCTCATAGAGAAAGAGATCAATTTTTCCAACTTTGAGGACatcgaggaagaggaggatgagaaGGCTGCAGACAGACTGCTCTTCTGTTACCTCACGCTCGTCATCAAACTCATCAAAGAATGCAGGTTTTTGGAGCTCCACAAACCCACGGACCTGCTCAGCAGCATCTGGAGTCATGTTGATTCTCATCTGCGTTACCCTCATTGCTGGGTCTGGCTGACAGCCTCTCAGATCTTTGGTTTGCTGTTTGCGGCTCATAAACCTGAGGAGCTCTTAGCCTTATGCAGCTCTCAGGAGAACACAAGTAAAACCACACAGCCTGTGGCCACCGCTTTTCTCATAGAAAACCTGTCTCAGAAGGTGAGAGAGCTGGTCCTGTCCTTCTGTTACCAACTGCAGTCCAAGTTCTTGGATATTTCTGCTGGAGAGCAGGTGGTGAAAAACTTACTTTACGTGGCCAAAGTGATCTACCTGATCTCACCAGAGTCTGATACCATAAATCCAGCTGAAGAACAGGAGAGTGAAGAGAAAGAAACGACAAATAACATGGAGGACAACGGAGGGGAGGacgaagatgatgatgataaaaagcAGGAGCTTGAGGAGCAACAGAATGAAAACAAGCCTCCGTCTCTTCTCTGGGTGATGAAAAAGCTGTCATTACTGGCCAAAAGAGAAGCAGCAGATACACCGAAAGTGCCTTTGAAGagaacttgtgtttttaagtttttggGAGCCATAGCTGTGGATCTCGGAAAAGATCAACTTGGACCATATCTGACTACTATCATCGCTCCTCTCTACAGAGAGCTGGACAGCACATATGCAGACCAAGACCCCACACTAAAGAATCTGGCTCAGGAGTTGATTGAGTTGTTGAAGAAGCTGGTCGGTCTGGAGCGGTTCTCTCTGGCTTTCGCTGCAGTGCAGAAAGAAGCCGCTCAGAGACGAGCTTCACGCAGGAAAGCCAAAGCCATGCAGGCTGTTGTAAATCCTGACATTGCTGCCAAAAAGAAGGTAAAGAAGCAGTTCAAGAAAAACGAGTCCAAAAAGCGGAAAATCACATTTGTGCGTACGGGACATAAAGCAAAGAAACATAAAGGCACATCACTGAGAGATTTGGCTATAATCAGctgattcatttgtttgttttttgctaaataattcCTCACCAAATGTGTACTTGACAGTTTGGAGGGTCTGTATCAGTATATGGATTTTTGCAATTTGtgcaatgtttttaaataaaaaaaaaaaaagcaaaaa

Function

GO: NA

KEGG:

id description
K14772 UTP20; U3 small nucleolar RNA-associated protein 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37517 lncRNA upstream 5566 1994308 ~ 1995523 (+) False lyrm5a
TU37451 lncRNA upstream 92162 1907200 ~ 1908927 (+) True G25193
TU37447 lncRNA upstream 94983 1905830 ~ 1906106 (+) True G25192
XR_006250555.1 lncRNA upstream 99203 1899896 ~ 1901886 (+) True LOC122342405
TU37306 lncRNA upstream 170121 1830678 ~ 1830968 (+) True G25086
XR_006250654.1 lncRNA downstream 6486 2028796 ~ 2033049 (+) True LOC122342875
TU37535 lncRNA downstream 6494 2028804 ~ 2032064 (+) False LOC122342875
TU37531 lncRNA downstream 26914 2049224 ~ 2050952 (+) True G25249
TU37589 lncRNA downstream 84453 2106763 ~ 2107094 (+) True G25288
TU37601 lncRNA downstream 145423 2167733 ~ 2167997 (+) True G25300
XM_043236224.1 mRNA upstream 5553 1994240 ~ 1995536 (+) True lyrm5a
XM_043238038.1 mRNA upstream 7501 1990505 ~ 1993588 (+) False usp18
XM_043238036.1 mRNA upstream 7501 1990508 ~ 1993588 (+) True usp18
XM_043238037.1 mRNA upstream 7501 1990508 ~ 1993588 (+) False usp18
XM_043237920.1 mRNA upstream 11152 1987476 ~ 1989937 (+) True pex26
XM_043237924.1 mRNA downstream 156222 2178532 ~ 2189748 (+) False LOC122343453
XM_043237923.1 mRNA downstream 156223 2178533 ~ 2189748 (+) True LOC122343453
XM_043237518.1 mRNA downstream 366669 2388979 ~ 2394441 (+) True ifrd1
XM_043237879.1 mRNA downstream 483636 2505946 ~ 2602501 (+) True foxp2
XM_043237878.1 mRNA downstream 515709 2538019 ~ 2602501 (+) False foxp2
TU37230 other upstream 212993 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 328130 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 709865 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 1335559 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1627007 373527 ~ 374082 (+) True G24632
TU37871 other downstream 1093198 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1097219 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1416821 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 1418602 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 1424748 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile