RNA id: XR_006250653.1


Basic Information

Item Value
RNA id XR_006250653.1
length 3628
RNA type transcript
GC content 0.45
exon number 17
gene id cald1a
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2042953 ~ 2088579 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACGGCTTCTAAAGGGCGGAGCTTCCCAAACTCAGAGTCCTGTTACTGAACGCTGGAGATTTTGGGAGTGAAGGAACAGCTCAAGTCATTTTCTCTTTGCAGGTTTCTTCGCACATCTAAAGGACGCACGCTTCGTTCGCCTCAACGCGCAGGGTCACGCTCTCAGAATTGAAGCATGGATGATGATTTCGAGCGGCGCAGGGAGCTCAGGAGACAGAAGCGGGAGGAGATGCGTCTGGAAGCCGAGAGGATGGCATATCGCCGgaatgaggaggatgaggaagaggcGGCTCGTGAGCGCAGACGAAGAGCGCGGCAGGAGAGAATGCGCAGCAAGGACAGCGAGGATGTGGCGTACCAACCCGAGACCCCCGAGCTCAACAACAGCCACAGCGTGACAGTGACAGAGAGCGTATCCACCTCAGTGGTGACTTCCAGCGGGACAGGCGAGGGGGACGATGAGGAGCAGGCCCTGCTGGAGCGCTTGGCCAAGAGAGAGGAGCGCAGGCAGAGGAGGATGAAGGAGGCGCTGGACAGACAGGAGGAGCCGGAGAGCACCAGAGGCCGGAGCTACGAGCCAGAGGAGGAGCACAACAGCAAGGAGGAGGTCAAAcaggcggaggaggaggaggaggaggtcgTCACCAGAGAGGAGGTGCTGGTGGAGGAAAAGCCCCGGAGGTCTTATTTCAGAGAACAGGAATCCGTTGAAGAAATATCTAAAATACCTGAGGAGGACGATAATGAGCAAGATGCTGTGCCTTCTTCTGAAGTACATGAGGTGCTTGTAAATGAAGACGTAGATGATTCCGCAGTTGTTTCGGAGGTGGAAAAGAGTGAGATAGAGGGATTGACAGAGAATGGAGTGGATGAGATGAGAGAGGCAGAAAACTTTGAGAAATATGAGGTTTCAGAAAATGACGAGTGTTTGATGGAAGATGAAGATGTGATGAGGAAGAATAAACAGCCCAATGGAGGAGTGTGCGAGGACAGCACTCCCAAACACAAGAAAGCTGAGAGAACTTTCAGCCGAGGCAGCTTGCGCTCTCCTGAGGCGCCGGAGGCAGACGAGGCAGACAGCGAGGATGCTCGCTTGGAAGCCGAGAGAAAGCTGGAGGAACTGAAGAGGAGAAGAGATGAGATGGAGAGCGAGGAGTTCGAGAGGATGAGGCAGAAACAGCAGGAGGCCgaggtggagctggaggagctgaagaggaagagggaggagaggaggaaggTGCTGGAAGAGGAGGAGCGGCGGAGGAAGCAGGAGGAGGCCGAGAGGAAAGCCAGAGAGGAGGAGGaaaagaggaggatgaaggagGAGATCGAGAAGAGAAGAGCAGAGGCGGCTGAGAAGAGGCAGAAAGTGGAGGATTCGGTGGACGGAGAAGCCAGGAAGCCCTTTAAGTGTGTCAGTCCCAGAGGATCCTCCCTGAAGATCGGTGAGAGGGCAGAATTTCTCAACAGATCAGCACAGAAGAGTTCTGTGAAGGCGTCTCACTCTCCTGTGGTGTCCAAGATTGATAACCGATTAGAGCAGTACACCAGCGCCGTGCAGGGCAACAGAGAGGTCAGATCTCCCAGATCAGCTGCCATAGATCTTCCCATGGTGACGGACGGTATTCGCAACATTAAGAGCATGTGGGAGAAGGGGAATGTCTTCAGCTCTGGTGGGAGCCCAGCGTCCACCAACAAGGATGCAGCTGGGATAAAGGTGGGCGTGGCTGGGCGCATCAACGATTGGTTGAACAAAACTCCAGAGATGGGCAAAATGGCAGGAGGAAGACCCGCGGACCTAAAACCAGGCGACGTGACCAGCAAGCGCAATCTATGGGAAAACAAAGGATCCTCTGCTACCAAGcCGTCCCCTTGCTAATTGACTACAGATCTGACCACCTTGAGGAGGTCACAAGCAGAGGAGAGACCAAATCCGTCACCAATGgaATGGGCCATTAACCCTTCAAAGACGCCAGAGGCAGGGACCAAGAGAATGCACaacattcctttttttaatcttttattaataccaaaaaaaaatacaagcattTTATACTGCCAGGAAGATCTATGTGAGTAGACACAgtataaaagagagaaaaattaaaaaatatatatattttatcactgTATTCACAGGTCACCGTCTTACACCATCATAACATAAACGCAATGCCTTTGCATGTAACTTCTGTTAAACTGAAATCAAGGCTGTGAAAACAAGCAAgtcatttgtttagtttatatataacaattaaataacagCAGCCAACTTCAAACATTATGAGATTCCTTGAAAAGGAGGACGAGGAGTTGCATTCCGAATCTGTCAAATCACTCATTTTAAACATGTTAGTTACCCTTCTCACCTGTTAATTTATAACTAAAGCAAAGCTTCACCTTGCATTTCATGCCTGTTCGCCAGTTCCAGACCGAATATGAGCACCGTAGTGTAGctgtattttgtactttttgtcgtaacgacacttttttttaataaaaattgtctTAATAATATATGTTAGCACATAGTGTAAGTTTTTGTaattaactatatattttactgCTTGATACAAAATGGTCTTTGCTTTTGCtctcaatattattttatatcaaagcAAATTTTAATTCAGAAGAAGTCCATTATAGTCACACTGATGGCATCATTACATTATCATTGGCTTTTTTACTCTTGGAAACACCGTTGTTTGTGACCATCTTTTTGTAAGTGTTAATAGTGGAATAATCGGTATTGGTTAAAAAACTTAAACTCGAAAGAAAGGGAACATGCACTTTTTGATttaagtgcccctattattattaaagcagtgtgagcttttaacgctccaaaagcagcacatAGTGGCAAacaatgaatttgcatttcCAATGTGAAAAGATCAAGTGACATCCAAATTTTGATGTCAAcgtgaaacggcttgggactcgttttaaaagcGACACATTTCAATGAATCAAAGTCAGCTCTTTCAGAgtcaataactttatacatagtgcactttcagattttgcaggatgttttcattcgctttgagctgtgttacacactgcatgaaagctcattttcaaaaaatccataataggggcactttaaatgtcatatttgatGAGTACATTTCGCAATTTTTGCATATAATGCAAGGCTTTGATTAATCCAGAAACATCCATTTAGAAGAACAAAATCAATTCATGTTTATTGTTCAAGTGTTATATTTTCTACTTTCTGTTGCGATCATTCATACTAAATGGTAACATGGATGTCATCGCCTTACAGTAGTGCTAGCCGTCATGTAAACGCGTATCATTTCTGACGTCTTTTGTCAGACAAAGAATATCCAGTTCTGCCGCCGTAGCTTATCGCTAATGTCTCTAAATGTGCAAAGTTCCTGTATTCTGCTTGTATTTTTTGacaatcaagttttttttactatttgtttCAACACTTATGTATTGTTTCAGAGTAACACTATGCAAGTCGCACCACCTTTAATTGCAATTACCTTGTTACAAATATGACCGTTTTTGTAGCCAATAGTTCCATACAGAGCAAATGTTTCAACTTGTATCATTGTCTCAGTGACCACAATAAAGAGACCAATGAAAAACA

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0017022 myosin binding molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K12327 CALD1; caldesmon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37567 lncRNA downstream 10297 2032241 ~ 2032656 (-) True G25277
TU37518 lncRNA downstream 49197 1991992 ~ 1993756 (-) True G25240
TU37445 lncRNA downstream 139492 1903185 ~ 1903461 (-) True G25190
TU37443 lncRNA downstream 144696 1896886 ~ 1898257 (-) True G25188
TU37439 lncRNA downstream 197553 1845129 ~ 1845400 (-) True G25185
TU37586 lncRNA upstream 2773 2091352 ~ 2097801 (-) True tnni4a
TU37588 lncRNA upstream 2773 2091352 ~ 2094893 (-) False tnni4a
XR_006250781.1 lncRNA upstream 18185 2106764 ~ 2118325 (-) True LOC122343450
TU37599 lncRNA upstream 73951 2162530 ~ 2163319 (-) True G25298
TU37600 lncRNA upstream 74847 2163426 ~ 2163708 (-) True G25299
XM_043237023.1 mRNA downstream 92 2032823 ~ 2042861 (-) False tnnt2e
XM_043237022.1 mRNA downstream 92 2032823 ~ 2042861 (-) False tnnt2e
XM_043237020.1 mRNA downstream 92 2032823 ~ 2042861 (-) False tnnt2e
XM_043237021.1 mRNA downstream 493 2032823 ~ 2042460 (-) True tnnt2e
XM_043237024.1 mRNA downstream 510 2032823 ~ 2042443 (-) False tnnt2e
XM_043236029.1 mRNA upstream 2772 2091351 ~ 2097736 (-) False tnni4a
XM_043236830.1 mRNA upstream 211056 2299635 ~ 2375710 (-) True dock4b
XM_043236832.1 mRNA upstream 211056 2299635 ~ 2375709 (-) False dock4b
XM_043236833.1 mRNA upstream 211056 2299635 ~ 2375709 (-) False dock4b
XM_043237098.1 mRNA upstream 327087 2415666 ~ 2423463 (-) True tmem168a
TU37444 other downstream 140386 1901843 ~ 1902567 (-) False rsph9
TU37319 other downstream 388146 1653591 ~ 1654807 (-) False ccdc167
XR_006250650.1 other downstream 424655 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other downstream 424655 1609360 ~ 1618298 (-) False zgc:113263
TU37001 other downstream 972857 1069160 ~ 1070096 (-) True G24875
XR_006250644.1 other upstream 213748 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other upstream 215767 2304346 ~ 2375716 (-) False dock4b
TU38086 other upstream 932483 3021062 ~ 3021457 (-) False LOC122342805
TU38175 other upstream 1446258 3534837 ~ 3547467 (-) False LOC122342819
TU38177 other upstream 1459647 3548226 ~ 3577096 (-) False LOC122342819

Expression Profile