RNA id: XM_043237020.1


Basic Information

Item Value
RNA id XM_043237020.1
length 1230
RNA type mRNA
GC content 0.48
exon number 19
gene id tnnt2e
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2032823 ~ 2042861 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAAATCAGAGCGAAGCAGCGAGGTCACATGACCTGGCAGGTCTGTATTAGGTGAGCTTTGGGTTAGTTTGAAACTGTCTGCTCCCTGGACCCACTAGATAAGACCACATCTCTCATTCTGGTGAGATCTCAGGAATCAACTAGTCATGGCTGATACAGAAGAAGTCATGGAGGAGGAAGTTCAGGAAGTGGAGGAAACCGAAGAGGAAGTGGAAGTGCCGCCTCCGTCAGAGGAAGaACCAGCCCCTGAGGAGGAAGAGCCTGTGGAAGTAGAAGAGGAGCCAGAACCTGAACCACAAGAAGCTCCAGTGGAGGAGGAGGTCGCAGATGAGACAAAACCAAAGCCAAAATTCATGCCTAATATCACTGCTCCAAAGATTCCCGAAGGAGAGAAGGTGGACTTTGATGACATCCACAGAAAGCGTCAGGAGAAGGATTTATCTGAGCTTCAGTCTCTGATCGAGGCTCATTTCATCCAGAGGAAGAAGGATGAAGAGGAGCTTATTGCTCTGGTCAACAGAATCGACAAGCGGCGCGCTGAGAGAGCCGAGCAGCAGAGAATCCGTGCGGAaaaggagagggagagacaaGCCCGTCTGGCTGACGAAAAGGAGAGAAGAGAGCAAGAGgaacagagaaagaaacaagaTGAAGATGCTAAGAAGAAGAAAGCGCTTACTAACATGACACACCAGTACGGAGGAATCCAGCAGAAGGGCGAGGGCCGCAAGGGGGCGAAGaaacagacggagagagagaagaagaagaagattcTGGCGGACAGGAGGAAGCCACTCAACATCGATCACCTGTCTGAAGATAAACTGAAGGAGAAGGCCAATGAGCTCTGGCAATGGATGATGCAGCTGGAGGCTGAGAAGTTTGATCTCGGCGAGAAGCTGAAGAGACAGAAATATGACATGAATGTTCTCCAGACCCGAATCAATGAACAACAAAAGTTtgCCAAAGGTCGTGGCAAGGGCAAAGTTGGTGGCAGGTTGAGGTAAACGTGCAGCGACTCGAGGGCCACAGAGATCCAGAGGACTTTGTCTCtttcacatttgcatttatagtCATTATAAAACCTTTGTTCTGTTTGACTGCACATGTAGAGACATAAAGTGACATATTTTAGCGATGTCCTGTTTTATTCCTGCATTTTTGTCTTAGACACACAAGTATTGTGTCATTAATTTGATCCCTGCAACATTAAAAGAGTCAAATCCCCTA

Function

GO:

id name namespace
GO:0006937 regulation of muscle contraction biological_process
GO:0005861 troponin complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37567 lncRNA downstream 167 2032241 ~ 2032656 (-) True G25277
TU37518 lncRNA downstream 39067 1991992 ~ 1993756 (-) True G25240
TU37445 lncRNA downstream 129362 1903185 ~ 1903461 (-) True G25190
TU37443 lncRNA downstream 134566 1896886 ~ 1898257 (-) True G25188
TU37439 lncRNA downstream 187423 1845129 ~ 1845400 (-) True G25185
TU37586 lncRNA upstream 48491 2091352 ~ 2097801 (-) True tnni4a
TU37588 lncRNA upstream 48491 2091352 ~ 2094893 (-) False tnni4a
XR_006250781.1 lncRNA upstream 63903 2106764 ~ 2118325 (-) True LOC122343450
TU37599 lncRNA upstream 119669 2162530 ~ 2163319 (-) True G25298
TU37600 lncRNA upstream 120565 2163426 ~ 2163708 (-) True G25299
XM_043237025.1 mRNA downstream 8614 2022325 ~ 2024209 (-) True arl1
XM_043236223.1 mRNA downstream 32748 1995442 ~ 2000075 (-) True slc5a8
XM_043236892.1 mRNA downstream 47765 1979107 ~ 1985058 (-) True foxm1
XM_043236893.1 mRNA downstream 60413 1965852 ~ 1972410 (-) True pgm3
XM_043237892.1 mRNA downstream 72780 1954054 ~ 1960043 (-) True ccnc
XM_043237018.1 mRNA upstream 92 2042953 ~ 2088579 (-) False cald1a
XM_043237016.1 mRNA upstream 92 2042953 ~ 2088579 (-) False cald1a
XM_043237019.1 mRNA upstream 92 2042953 ~ 2088578 (-) False cald1a
XM_043237017.1 mRNA upstream 92 2042953 ~ 2067924 (-) False cald1a
XM_043236029.1 mRNA upstream 48490 2091351 ~ 2097736 (-) False tnni4a
TU37444 other downstream 130256 1901843 ~ 1902567 (-) False rsph9
TU37319 other downstream 378016 1653591 ~ 1654807 (-) False ccdc167
XR_006250650.1 other downstream 414525 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other downstream 414525 1609360 ~ 1618298 (-) False zgc:113263
TU37001 other downstream 962727 1069160 ~ 1070096 (-) True G24875
XR_006250653.1 other upstream 92 2042953 ~ 2088579 (-) True cald1a
XR_006250644.1 other upstream 259466 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other upstream 261485 2304346 ~ 2375716 (-) False dock4b
TU38086 other upstream 978201 3021062 ~ 3021457 (-) False LOC122342805
TU38175 other upstream 1491976 3534837 ~ 3547467 (-) False LOC122342819

Expression Profile