RNA id: XR_006250655.1


Basic Information

Item Value
RNA id XR_006250655.1
length 2758
RNA type transcript
GC content 0.45
exon number 13
gene id prkchb
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16886153 ~ 16900295 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagagagagagagcatttcCTGCTCTCTTTGGTTTgctcttttagttttaatgactATGCTACAAAACGTCTCTGCGTTTATTTGAACGTGTTGTTTTGTTCTTCATTATGAGTTGGTGTTAGCtcgtttttttctccatatgactgttttgatttcatttattcattttttttgtttgtgtgtgtgtgcatcgaATTTAAATATTGCGACAATATGAAATTCAACGGATATCTGAGGCTGCGTATCGGGGAGGCGGTGGATTTAAAACCAACAACGTATTCGACTCGCCACACTTTTCACAAGAAAATCGTCCTGGATCCGTATGTCGTTGTTAAAATCGATAATCTGAAAGTTGGACAGACCGCCACAAAATCGAAAACCAACAAACCGACCTTCAACGATGAATTCTGCCCGTACATTACAAACGGCAAAGAGCTGGAGCTGGCCGTTTTCCACAACACTCCTATAGGATACGACAACTTTGTCGCCAATTACAGAATCCAGCTCGATGAGCTGATAACGTCGTCAAACCCAAGACAAACGTTTGAAGGATGGGTGAATCTGGAACCAGAGGGAAGTGTGTATATCTCCATCTCTCTCACCGGCTCCTTTACAGATGATGAAGCTGTGAATGGACTGAAACCTCATAAAAAGTTTACAAGAAAAAGGCAAAAAGCTCTGAAGAAAAGAAAGGTCCACCAAGTCTATGGACACAAGTTTATGGCAACCTTCCTTCCCCAGCCTACTTTTTGTTGCCATTGCAGCAACTTTATCTGGGGTGTTTTTGGAAAGCAAGGTTATCAGTGTCAAGTGTGTGCCTGTGTGGTTCACAAGAGGTGTCATGATTTGGTTGTAAGTGAGTGTACACGTATGAAGAAAGATTTAAATGAGGGCCAAAGACAGGGCTTTAGCATCAACCTACCTCACCAGTTTAGGGAGCACAACTACAAAGTTCCCACATATTGTAACCACTGTGGATCTTTGCTTTACGGCCTGATAAAACAGGGGCTCCAATGCAAGAGTTGCAAGATGAACATCCACAAACGCTGTGAACAGAATGTTGCACTTAACTGTGGGGTGAACAGTGCTGAGCTGGCCAGCAAATTGTCTGAGATCGGATTGCTTAACACTCTTTCTAAAAGGAAATCTCAGAGTTCTCTGCACATGACAGGAATAAAGTGTCAGAACTCTATTAAAGGTGTGCAGCCGACATCCGAAGAGTCAGAGGAAGATGCTGTTAAAGTCGGTCTGGAAGACTTCAGTTTCTTGCAGGTTCTGGGAAAAGGCAGCTTTGGCAAGgtGATGCTGGCTCGCCTAAAAAGTGACCACAGGGTGTTTGCTGTAAAAATGCTGAAGAAGGATGTCATACTACAAGAAGATGATGTGGAAGCAACCATGATTGAGAAGAGAGTGCTAACTCTGGCTCACCAGCATCCATTTCTTACACAGCTCTACTACTGCTTTCAAACTGCGGAGCGGTTATTCTTTGTCATGGAGTTTGTGAATGGCGGCGACCTAATGTTCCACATCCAGAAGTGCAGGCGCTTTGACGAGCCACGAGCACGCTTTTATGCCGCAGAGATCATTTCGGCCCTTATGTTCCTTCACTCCGAAGGCATCATTTACAGAGACCTCAAACTGGACAATATTCTCCTGGACAGAGATGGCCACTGCAAACTGGCAGATTTTGGCATGTGCAAAGAGGGTATACGTGAGGGAAAACTCACTAGTACCTTCTGTGGGACTCCCGATTATATTGCACCCGAGATCATCCTGGAGGACCCCTATGGAGTATCAGTGGACTGGTGGGCTCTGGGTGTGCTTCTTTACGAGATGCTGTCCGGCCATGCTCCATTTGAAGCAGAGACTGAGGACGAGTTGTTTGAGTGCATCCTCAAAGATGagatcatttattcatcttggCTCAGCAACGAGGCGGAGGACATCCTTAGAGGAGTGAGTCTAGAtctatttaatctatttaacCAGAGCAATGAAGACACTTGTAGCTCACTTGTAGCTAGATTATAGCTTCATATGTAAACACAGTAGCAAGTACGTTTGTCTTTTTGTCTACATTGACTCTCAGGCAGCTGTGTTGGGAAATCTGTGACTTTCCTGGCAGTGACGTCTTATTAAACaatcctcttcctcttctgttCTGATCACTCATTGCcaaaacatttatatcaaaactACTCAGTGGCATTTCATGCCGAAACATGACTTGGTCTTCAGCTTTACCcaccagaaaaaaaactcaaatctgGCTTCATTTAAGAGCTTCAAGTAACCATGTTTCTTGGCTAATGCAGCCGAGAGACTTTTCTGTGGGTTTTGGCCGGCGCTATGTAAGCACCAGTAAACATGAGGCTGATCTGCTGCGGAGAGCATGCTGTTTCATTCCTCAAAAGGCCCAGGATGTCAGGATCACAAGCTGTCTCTGTCCTTTGTGCCTCGTTACATAAGCTCCATTGTACCCCATTAAGGGTTAAAGAGCTGTGTCATGGTAGAAGGATTAACGTCATGTGATTGAGTAGAGGTCTTCTCGCATTAGTGGAGTAAAATCCCTAATAAACCTGTTTCCAAGGGCTCGAGTCGGTGATCTGTGCATTACTCACCAGAGACCCGGCGTGTCGGCTGGGCTGCatggagagagatggagaagagGCCATCACTACACACCGGTTCTTCACAGGACTGGACTGGGAGAAGCTGAACAGACGAGAGATTGCACCGCCTTTCACACCTCG

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43019 lncRNA downstream 185303 16701068 ~ 16701671 (-) True G29021
TU43009 lncRNA downstream 276975 16609636 ~ 16609999 (-) True G29012
XR_006250612.1 lncRNA downstream 335970 16550333 ~ 16551004 (-) True LOC122342602
XR_006250611.1 lncRNA downstream 341353 16544954 ~ 16545621 (-) True LOC122342601
TU42954 lncRNA downstream 422295 16464445 ~ 16464679 (-) True G28970
XR_006250656.1 lncRNA upstream 7914 16908209 ~ 16924965 (-) False LOC122342882
XR_006250657.1 lncRNA upstream 15027 16915322 ~ 16924965 (-) True LOC122342882
TU43160 lncRNA upstream 55160 16955455 ~ 17026339 (-) False G29127
TU43163 lncRNA upstream 55160 16955455 ~ 17026339 (-) True G29127
TU43183 lncRNA upstream 138532 17038827 ~ 17040834 (-) True G29143
XM_043237577.1 mRNA downstream 5579 16868461 ~ 16881395 (-) True hif1ab
XM_043237578.1 mRNA downstream 7719 16868461 ~ 16879255 (-) False hif1ab
XM_043237581.1 mRNA downstream 18989 16864505 ~ 16867985 (-) False snapc1a
XM_043237580.1 mRNA downstream 18989 16864505 ~ 16867985 (-) True snapc1a
XM_043237579.1 mRNA downstream 22551 16852999 ~ 16864423 (-) True sgpp1a
XM_043237667.1 mRNA upstream 55225 16955520 ~ 16958074 (-) True six6b
XM_043236872.1 mRNA upstream 87013 16987308 ~ 16993364 (-) True ppm1ab
XM_043238042.1 mRNA upstream 185167 17085462 ~ 17089500 (-) True ckbb
XM_043238043.1 mRNA upstream 185167 17085462 ~ 17089478 (-) False ckbb
XM_043236669.1 mRNA upstream 218048 17118343 ~ 17122117 (-) False xrcc3
TU43020 other downstream 178014 16707774 ~ 16708960 (-) True G29022
XR_006250870.1 other downstream 866412 16020444 ~ 16020562 (-) True LOC122343883
XR_006250906.1 other downstream 866815 16020041 ~ 16020159 (-) True LOC122343926
XR_006250859.1 other downstream 868799 16018057 ~ 16018175 (-) True LOC122343872
XR_006250836.1 other downstream 869198 16017658 ~ 16017776 (-) True LOC122343847
TU43174 other upstream 106632 17006927 ~ 17017823 (-) True G29135
TU43209 other upstream 218333 17118628 ~ 17122129 (-) True xrcc3
TU43541 other upstream 736864 17637159 ~ 17638709 (-) False srd5a3
TU43577 other upstream 835055 17735350 ~ 17736274 (-) True G29417
TU43653 other upstream 1070310 17970605 ~ 17979922 (-) True G29473

Expression Profile