RNA id: XM_043237042.1



Basic Information


Item Value
RNA id XM_043237042.1
length 1135
RNA type mRNA
GC content 0.44
exon number 8
gene id cd9b
representative False

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1568264 ~ 1575414 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ttgttcactccCTCAGTTTTTTAAGGTTGAAAACAAGCACGTTTCAGGTGCTCAGTATCGGGTGTTTTTTCCTCAAAACTGTGCTTACTTTTTAGCCATGGCAGCGGGTGGACTTCAGTGTATCAAATACTTGCTCTTTGTGTTCAACTTTATCTTCTGGCTCGCAGGTACAGGAGTTTTAGCTGTGGGTCTCTGGCTGCGATTTGATGAAAGAACTAAAGGACTCTTCACTGGAGAAAATGCCCCATCAGTGTTCCTCACAGGGGTCTATATCCTCATTGTGGCAGGTGCCATCATGATGGTGGTTGGGTTTCTCGGCTGCTGTGGTGCAATCAGAGAATCAGCTTGCATGCTGGGACTGTTCTTTATGTTCCTGCTCATCATTTTTGCAGCAGAGGTGGCTGCTGGAATCTGGGGATTGTCCAATCAGGACAAGATCGTGACAGACCTCCAGCAGTTCTACACGCAGACGTTCAACACCTACAAGGATACTAAACAGGAAGCACTGAGAGAAACTCTGCGGGCCATTCAGTATGGTttgaaGTGCTGTGGAACGTCAGGAACAATTTTCGATGGAGCAACTGAAACCTGTCCCAAAAAGGAGGGCCTGGAAGTCTTGGTCACAGtgAACTGCCCAGATGCTATTAAGGATGTCTTCACTTCTAGGCTTCACGTGATTGGAGGAGTTGGGATTGGCATTGGTGTGGTCATGATCTTCGGCATGATCTTCAGTATGCTGTTGTGCTGCGCCATCCGAAGAACCCGAGACATTGTATGAGCTGCCGTTCTCGCTGCAGCCTGTCTTCTGCTCTGTATTTATCTGTGTTTGTAaaggtgtgtttgtgcgtgtacATGTTTGGAAAATCGCTCTGATAAACTTCTAACAAAGCCCAGCTTTAGTCAAGCATTCTCAACTGTTACAGGTCATGCATATGTTGAGTGGAGCGATGAATAGCACTAGAGGCtgcttttaatttctttctttgatGTTTCAACTAATGTTCATTTGACTTTTTGAACTTACTTGTAAGCTTCTGGCATTCTTGTTATGTTTTATGTGGCTTATTTTATGTATACGTACGGGAAAATAACACCTACTGTAGTAAATTACCAATAAAGTTCATAACTAATTGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU37142 lncRNA upstream 12501 1556392 ~ 1557778 (+) True G24968
TU37102 lncRNA upstream 238436 1329465 ~ 1331843 (+) True LOC122342419
TU37074 lncRNA upstream 283206 1286612 ~ 1287073 (+) True G24925
TU37037 lncRNA upstream 321110 1247380 ~ 1249169 (+) False LOC122342481
XR_006250559.1 lncRNA upstream 442899 1112895 ~ 1127380 (+) True LOC122342413
XR_006250791.1 lncRNA downstream 95203 1670617 ~ 1672760 (+) False LOC122343488
TU37284 lncRNA downstream 113564 1688978 ~ 1693389 (+) True G25071
XR_006250569.1 lncRNA downstream 208823 1784237 ~ 1787234 (+) False LOC122342451
TU37231 lncRNA downstream 213217 1788631 ~ 1789276 (+) True G25030
TU37306 lncRNA downstream 255264 1830678 ~ 1830968 (+) True G25086
XM_043236528.1 mRNA upstream 44071 1521620 ~ 1526208 (+) True LOC122342591
XM_043236173.1 mRNA upstream 50639 1504044 ~ 1519640 (+) True ntf3
XM_043236683.1 mRNA upstream 83602 1477821 ~ 1486677 (+) False tbc1d30
XM_043236885.1 mRNA downstream 29375 1604789 ~ 1609142 (+) False si:dkey-14d8.1
XM_043236887.1 mRNA downstream 29375 1604789 ~ 1609142 (+) False si:dkey-14d8.1
XM_043236888.1 mRNA downstream 29578 1604992 ~ 1609142 (+) True si:dkey-14d8.1
XM_043236316.1 mRNA downstream 46665 1622079 ~ 1624891 (+) True LOC122342485
XM_043236307.1 mRNA downstream 54179 1629593 ~ 1634607 (+) True si:ch211-214j24.15
TU37077 other upstream 279055 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 904749 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1196197 373527 ~ 374082 (+) True G24632
TU36680 other upstream 1196455 373527 ~ 373824 (+) False G24632
TU36656 other upstream 1275210 293235 ~ 295069 (+) True G24609
TU37269 other downstream 95098 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 208878 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1540094 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1544115 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1863717 3439131 ~ 3439654 (+) True LOC122342808

Expression Profile