RNA id: XM_043237079.1


Basic Information

Item Value
RNA id XM_043237079.1
length 677
RNA type mRNA
GC content 0.47
exon number 5
gene id ucmaa
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2923221 ~ 2927098 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCTCCTTTCCTTCGCCttccctcttctctctctcttaaagacgcgctctgtctctctctaagGTCTCAGGACTTTTGCTGTGGTTCTGGTACCTGCGCAAGACACACTCATCTTCTGAAGGATGGCCGGGACTCACGCTGTGCTGCTCACACTGCTGCCCACCGTCCTCGTGCTGATTGTGTTGGCCGGAGTTGAAAGTGCAGCTGTTAAAGATGTAAAAGACAAAGCTCAAGCAGGAACATCTAAACGAGTTTTCATGCCAGCATCTGATGCCTCAAACTTTTTCAAACGCCGCGGTCGCAGATCCCCAACAACTTATGAAGAGTACTATGCGGAGCAGAGGGTGAAGATGTCTGCAAACGAGCGAAGGAGAGAGCATTTAGAGGAACAAAACAACGAATACGAGAACTATTTAGAGGAGGAGCGCGACGAACAGTACGAGAGGACCAGAGAGAAGAACGAGCAGTGGAGAGAATTCCACTACGATGGGCAATACCCACGATACCCTCACCACCGCCAGTACGCTTGAGCGCATAAGACCGTGTGAAATGAGTGGATAACCATCATTTGAGGGATACTTTCATgacataatataataagtacTCGAAACATTTAAGCACTTACAGATTTAAAGCTTTTAATacgtgtaaaaataaaagggtttgtgtgtttgga

Function

GO:      GO:0005578

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250771.1 lncRNA upstream 97434 2790078 ~ 2825789 (+) False LOC122343411
XR_006250770.1 lncRNA upstream 97434 2795818 ~ 2825789 (+) True LOC122343411
XR_006250772.1 lncRNA upstream 135566 2726802 ~ 2787657 (+) True LOC122343412
XR_006250552.1 lncRNA upstream 203862 2686424 ~ 2719361 (+) True LOC122342395
TU37817 lncRNA downstream 4010 2931108 ~ 2931859 (+) True G25453
TU37820 lncRNA downstream 8064 2935162 ~ 3030892 (+) True G25455
TU37821 lncRNA downstream 8064 2935162 ~ 2936229 (+) False G25455
TU37823 lncRNA downstream 90469 3017567 ~ 3024764 (+) False G25456
TU37828 lncRNA downstream 90469 3017567 ~ 3024764 (+) False G25456
XM_043237682.1 mRNA upstream 2980 2916161 ~ 2920243 (+) True phyh
XM_043236380.1 mRNA upstream 9744 2912178 ~ 2913479 (+) True LOC122342536
XM_043237665.1 mRNA upstream 14528 2907459 ~ 2908695 (+) True si:ch1073-67j19.1
XM_043236336.1 mRNA upstream 60834 2847274 ~ 2862389 (+) True elk3
XM_043237770.1 mRNA upstream 281386 2622539 ~ 2641837 (+) True mdfic
XM_043237075.1 mRNA downstream 10974 2938072 ~ 2941597 (+) True cdc123
XM_043236798.1 mRNA downstream 16826 2943924 ~ 2994499 (+) True camk1da
XM_043237123.1 mRNA downstream 79775 3006873 ~ 3012104 (+) True optn
XM_043236263.1 mRNA downstream 172639 3099737 ~ 3117994 (+) False ninj2
XM_043236262.1 mRNA downstream 172698 3099796 ~ 3117994 (+) False ninj2
TU37230 other upstream 1135127 1784292 ~ 1788096 (+) True LOC122342451
TU37269 other upstream 1250264 1670512 ~ 1672959 (+) True LOC122343488
TU37077 other upstream 1631999 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 2257693 654092 ~ 665530 (+) True G24771
TU36683 other upstream 2549141 373527 ~ 374082 (+) True G24632
TU37871 other downstream 188410 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 192431 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 512033 3439131 ~ 3439654 (+) True LOC122342808
unassigned_transcript_299 other downstream 513814 3440912 ~ 3441500 (+) True LOC122342809
unassigned_transcript_300 other downstream 519960 3447058 ~ 3447574 (+) True LOC122343393

Expression Profile