RNA id: XM_043237091.1


Basic Information

Item Value
RNA id XM_043237091.1
length 3166
RNA type mRNA
GC content 0.45
exon number 9
gene id net1
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5454172 ~ 5476182 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTCCCTAGAACAAAGTTAGAGATTGTTAGAGTACACACCGAGAGTGTGTTTAGAAGTTAGAAAGCTCCGCTCAGGCGGACAATCAGAGGATAGGGGGAAGGTGAGGTTTTCAGACCCCTTATGTTACATCACGTATTTATTTAAGAATCACTTGTGGATTACTGCCGACCTTGGAAATAAGAGAAAACAACCAGTGGATTTTATTGAAAGAAATGGTGGCTTACGATGAACCCTGTGTGGTACCTATCAAACGGACTTTACAGAAGATAGACTACCAGAACCAGACTTACAAAGAACTAGAGGAACCCTGTACTAAGCGTGTGCGGCCTCTTGGCCGAGTGACCTCGCTGGCGAACCTCATCTCTCCCGTGAAGAATGGGGCCGTCCGACGCTTCGGCCAGACCCTCCAGGCCTCATTTCGGGGTGATGGGCGGTCCCCGGGCGTGCCCCAACAAAAACCCTGCAGTAAGGCCGCAGCTCCCACACCACCCAAGCGACGAAACAGCACGCTCTGGTCCGAGACCCTGGACGTCCATCAGAAAGGAACCTTTTCCACCAAAGAGATTAAGAGACAAGAGGCTATTTTTGAGCTGTCTCGAGGAGAACAGGACCTGATTGAAGATCTGAAATTAGCCCGAAAGGCGTACCATGACCCAATGCTTAAACTTTCTATCATGTCTGAAGAGGAGTTGACAGCCATCTTTGGAGACTTGGATGCGTATATTCCTCTTCATGAAGATCTTCTCGCTGATTTGGCGAAGGCTACAGGCCCAGATGGCACAGTGGGACAGATCGGCAAGATTGTTGTGGACTGGCTGCCAAGGTTAAACGCGTACAGGGCATATTGCAGTAACCAGCTGGCTGCCAAGGCCTTGCTTGACCAGAAGAAACAGGACCCAAGAGTTCAGGACTTTCTACAGCGCTGCCTTGAGTCACCTTTCAGCAGAAAACTAGACTTGTGGAGCTTCTTAGACATCCCTCGTTCACGATTGGTCAAATACCCCCTTCTTCTGAAAGAGATTTTAAGACACACACCACCAGACCACCCAGACACAGCAAGTCTTGAGCAGGCAATAAGCATCATTCAGGCTGTTTTGGCTGACATAAACATGAAGAAAGGGGAGTCTGAGTGTCAGTACTATATCGATAAGCTGGAATATTTGgatgacagacagaaagaccCTCGCATAGAGCAGTGCAAGAGCCTGCTTTGCCATGGGGAACTTCGCAACAAAAGTGGCACGAAGTTGCACGTGTTTCTCTTCACGGAGGTTCTGGTCCTGACCCGGCCTGTTATGCGGAATGACCGGCATTGTTTCCAGGTGTACCGCCAGCCGATCCCAGTGCAGGACCTTGTTTTGGAAGACCTGCAGGATGGAGACGTCCGCATGGGTGGCTCATTCCGAGGGGCCTTTAGTAATGCTGATAAAGCCAAGAACATCTTTCGAGTACGCTTCCAGGACACATCTCAGGGTCAGTCCCACACACTGCAGGTCAATGACATCTTCCACAAGCAACAGTGGCTCAACTGCCTCCGCACTGCCATGTCGACCCAGAAAGATTCGTCACTCCCTGAAAGTGAATCCTTGACCACCCCTGCCAGTACCGACGTTTGCACCAAACGACGCTCGTCTTCCGTCTCTGCTATCATCCATATGGAAGAGACGGATGAGAACTGTCCACGGGCCGCAGCCTCCGCCCCTTCGTCCCCCAGCTCCGAGGAGCCCCCCAGCCCCACACCCTCCGCAACCTCCACCCTCTCCTCGtcctcttcatcatcttcaatTTCCGCCCCCTCCCTGCCCCGCAAATCCAAAAAGGACAAGCGTTCAATCTGCTCGTTGGGCAAGAGAAAGGAGACCATGGTGTAGAGACTAAGCTATCCCAGGGTACACATGGAATGACACTGTGTGGAGGActtgtatttatgtgtgtgtatggactGTGTGTTTCTACAGCAGTGTTTTTGTTACTGTCCACAATGGCAGCTATTATTACCAAATCCCTCCCCCCCAAAACCCTCCCAGGTCCACGTGGGCCACACCAGTACCAGAAAGACAGTATTTGTGAGGCGACTGTGTGGATCTCAAGGGACTGAAGTTGAAGACATCCCgcacattttaaatcacagcGTTGATTTGTGTGAAAGCGCAAGATCACACATCTAGTCTTGTTTACTGTTAGTTTggtcatatttttgttttattttattaatatagattttttttgtaattaaagttttacttttttaaaacttcaaTAAGATATTTACTGtagctcttttttgtttttattaaaagcactGTGTTTAGCTTTTAGAAGGGAAGAATACccactgaggaaaaaaaaaaaaaagataaaatatccTAAGCAATGAATACTTTGTAAAAGTCTGATTCATAGCTCTACTGGAAGGCAAGTCTTACAAGTACATTCCCATTAAATATTAGGTTTTGTCAGctccattttatatttaaatcagaaaataacTTATCAAGACAAGAAAATCGTAGAAATGTGATTTCAAACtgtccaaaatgtaaaatttgccATTTTGTTAATGCAAAAATCAAACCTGAGCCAAAAGTTTTACCAAAATGATGGATGAATATTTCAATGTAGCATCTTGCATGGAGCTTTACTTGTTGAGTCCTGCCTGTATTATCATGAGGGCCCAGTGCATGTACATGCTTGTCAAAGCAGAAAGTTGTTGTTGTAGATACGGACTGTCAATTAGAAGAAAAGGTGAATGTTGAATGAGGGCTTGAGAAATGTTGATGTGAGATTTAGAAGGAAATTTTGGAAAAGAGTTGGATACGACTAGATGGACTTGATGATTGACGCTACTTGATATTAGCAACCGTTCATGGACATTGGTttgctgttatttatattttcgtAGTGTCTTCATGAAGGAGGAAGGTTTGATACACTGGTTTAAAAGCCAGGATGTTTTGAGAAGGAACATGAAAGTATGTTTAGGAGAATGAACTGTTTAAAGAAGGTTAATGTATGTTATGACCACTTCAAAATGTCTGTAAAGGTTTGTAAATGAGAAAGGATGTACATTATTGGAAGGACTGTGGTGGcctgtatgtacagtatgtggtgTAAAAATCAACtattaaaagaacaataaagGTCTGTGTAAGATTTGCATCTGA

Function

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38998 lncRNA downstream 44133 5408627 ~ 5410039 (-) True G26285
TU38994 lncRNA downstream 64987 5386766 ~ 5389185 (-) True G26281
TU38984 lncRNA downstream 107117 5346785 ~ 5347055 (-) True G26271
TU38983 lncRNA downstream 109302 5342498 ~ 5344870 (-) True G26270
TU38925 lncRNA downstream 212392 5240331 ~ 5241780 (-) True G26237
TU39013 lncRNA upstream 21421 5482642 ~ 5482847 (-) True G26295
XR_006250759.1 lncRNA upstream 25842 5487063 ~ 5519852 (-) False LOC122343358
XR_006250758.1 lncRNA upstream 25842 5487063 ~ 5503476 (-) False LOC122343358
XR_006250757.1 lncRNA upstream 25842 5487063 ~ 5498849 (-) True LOC122343358
TU39023 lncRNA upstream 25876 5487097 ~ 5494643 (-) False LOC122343358
XM_043237942.1 mRNA downstream 219116 5224238 ~ 5235056 (-) True prmt8b
XM_043237943.1 mRNA downstream 219119 5224238 ~ 5235053 (-) False prmt8b
XM_043236975.1 mRNA downstream 238010 5207074 ~ 5216162 (-) True LOC122342835
XM_043236974.1 mRNA downstream 248851 5201608 ~ 5205321 (-) True LOC122342834
XM_043237968.1 mRNA downstream 252488 5197046 ~ 5201684 (-) False LOC122343482
XM_043236196.1 mRNA upstream 79068 5540289 ~ 5549648 (-) True podxl
XM_043236799.1 mRNA upstream 114436 5575657 ~ 5578580 (-) True LOC122342741
XM_043236302.1 mRNA upstream 119281 5580502 ~ 5711019 (-) False btbd11a
XM_043236300.1 mRNA upstream 119281 5580502 ~ 5700741 (-) True btbd11a
XM_043236301.1 mRNA upstream 119281 5580502 ~ 5700740 (-) False btbd11a
unassigned_transcript_303 other downstream 689005 4765080 ~ 4765167 (-) True trnay-gua_1
unassigned_transcript_302 other downstream 689232 4764853 ~ 4764940 (-) True trnay-gua
XR_006250792.1 other downstream 696345 4731224 ~ 4757827 (-) False LOC122343492
TU38442 other downstream 1186677 4264926 ~ 4267495 (-) True G25880
TU38194 other downstream 1849902 3602358 ~ 3604270 (-) False LOC122342823
unassigned_transcript_305 other upstream 255825 5717046 ~ 5717133 (-) True trnay-gua_3
TU39166 other upstream 257791 5719012 ~ 5720250 (-) True G26405
TU39169 other upstream 268797 5730018 ~ 5736946 (-) True G26408
TU39171 other upstream 268797 5730018 ~ 5736946 (-) False G26408
TU39173 other upstream 268797 5730018 ~ 5736946 (-) False G26408

Expression Profile