RNA id: XM_043237097.1


Basic Information

Item Value
RNA id XM_043237097.1
length 4776
RNA type mRNA
GC content 0.51
exon number 25
gene id jag2b
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17308293 ~ 17348870 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTGGTAGCTGTGAACACATCATTTTGCCGTGAAGTGATCAGATCGAGGGAGAGATCAGCCCAGACATCACCGCGCAAACACACCACGCTTGTGAATTTTTGCATGTCAGGAGCGGAGGATCCTGTCGCCGGTCAACGGCCGTTTTCCATCTCGTATTCATAACGCAGAAATCAGAGGCATGTGGAATTGTATCAGGATTAGGAATTGGCTCCCAATCGCGTGCCTGCTGTTAACGATATGGACGAAGCGATCCTACACACTCATCCTGGAAGCCTGGGACTGGGATAACTCCACTCAGAACActGGCGAGGAAAATTTGATTGAGCGACACATTCACGCCAGCATGGTGAATCCCGGAGACCACTGGCAGTCCATCCGGCACCCCGGCATCACGGCCCACATTGAGTATCGCATTCGAGTCAGATGTGATGAGAACTACTATGGGAGTAAGTGCAACAAACAGTGCCGGCCAAGAGATGACTACTTCGGCCATTACCGCTGCGATCCATCTGGAAATATTGTATGTCTAGATGGCTGGATGGGAGAGGACTGTCGGACAGCAATCTGCAAGCAGGGCTGTAATCTGATTCACGGAGGCTGTACGGTGCCTGGAGAATGCAAGTGCAACTATGGCTGGCAGGGCCAGTTCTGTGATGAGTGTCTACCGTACCCCGGCTGCTTGCACGGGACCTGCAGCATGCCCTGGCAGTGCACTTGCGAGAAGAACTGGGGCGGCCTCCTCTGCGATAAAGATCTGAATTACTGTGGCACGCACCATCCATGCGTCAACGGCGGGACCTGCATGAACTCTGAACCCGATGAATATAACTGTGCCTGTCCTGAAGGGTACTCGGGCAAGAACTGTGAAATAGCTGAACACGCATGTGTTTCCAACCCCTGTGCGAACGGAGGCACGTGTCACGAAGTCCCGAGCGGGTTTGAGTGCCAGTGTCCACCAGGCTGGGAGGGCCCCACTTGTGCTAAAGACATGGATGAATGTGCCTCCAGCCCGTGTGCACAAGGCGGAACATGTATCGACCTGGAAAATGGCTTTGAGTGTGTCTGCCCTCCTCAGTGGGTTGGGAAGACCTGTCAAATCGATGCAAATGAATGTATGGGGAAGCCTTGTGTAAATGCTCACTCTTGCAAAAACATGATTGGTGGATATCACTGTGACTGCTTTCAAGGATGGGCCGGACAGAACTGTGACATCAATCTCAATGGCTGCCATGGACAGTGCCAGAATGGAGCAACATGCAAGGAGCTGGTTCATGGAGGTTACCACTGTCAGTGTTCTCCAGGTTTTGTGGGCTTGCACTGTGAAGTCTCAAGGAACAAATGCGCCAGTGGTCCTTGTCAAAACGGCGGCCGCTGTCATGTCATTCTGGACAGCTTTGTTTGTGAATGCCCGCCAAACTATGCAGGGATGCTCTGTGAGgtggGCAGTCCGTCTTACCCAAACCCCTGTGAACCGAACCCCTGTCAGAACAAAGCTTCGTGCTACGGCCTGCCGGGTGACTTCTACTGCGCCTGTCCTGAAGACTACGAGGGCAAGACCTGTGAAAACCGCAAGGACCACTGCAAGACAACCCCTTGCCAAGTGATTGACAGCTGTACGATTGCTGTGGCGAGTAACAGCTCAGACGGGGGTGTGAGACACATCAACTCTAATGTGTGTGGTCCTCATGGCCGCTGTATCAGCCAGCCGGGCGGCAACTTCACCTGCACCTGTGAGCTCGGCTTTACAGGAACCTATTGCCATGAGAATGTAAACGACTGCGTGAGCAATCCGTGTCGAAACGGAGGCACCTGCATCGACGGGATCAGCTCTTTCCAGTGCTTCTGTCCGGATGGCTGGGAGGGTGACCTCTGCGACCTCAATGTAAACGAGTGCAGTCGGAGCCCCTGTAAGAACGACGGACACTGTGTGGACCTGGTCAATGACTTCTACTGTGAATGTGCCAATGGCTGGAAAGGAAAGACCTGTCATTCACGTGAAAGTCAGTGTGATGCCACCACATGCAGTAATGGAGGGACCTGCTATGACCACGGAGACACTTTCCGCTGCGCCTGCTCTCCTGGATGGGGAGGAAGTACATGCAACACAGCCAAAAACAGCACTTGCGCGTCCAGCCCCTGTCTGAACGGTGGAACATGCGTGGGTGGTGGTGACACGTTCACCTGCATCTGTAAAGACGGCTGGGAGGGGCCCACCTGCGCTCAGAACATCAACGACTGCAACCCTCACCCCTGCTACAATGGAGGAATCTGTGTGGACGGGGTGAACTGGTTCCGCTGTGAATGCGCCCCTGGATTCGCTGGACCCGACTGTCGTATCAACATTGATGAGTGCCAGTCATCACCCTGCGCATACGGTGCCACCTGTGTGGATGAGATCAATGGCTTCCGATGTGTCTGCCCACTTGGTCGCACCGGACCTCAATGCCAAGAGTTCATTGGCATTGGTAAGACATGTCACTATGCTGGACTTCAGTTCCCGCATGGCAGCCGCTGGGAGGAAGAATGCAACACTTGTCAATGTGTCAACGGCAAAGTGGAGTGCACCAAGGTGGTGTGTGGCCGGCGGCCGTGCCTCTTACCAGGGACGCCACTGCGAGAGCTTCACTCCTGTCCAGGAGGTCGTGAATGTCTGGAGCACAACTTCCTGACTTGCCTCTCTCCCCCTTGCCACCAGTGGGGGTTTTGTTCAAGCCCCGATGCCGTCCCAACCATTCAAACTAAATGTGAGCCCAACTCAGTCTACCTGGACAAGAGCTGTGCTCGCATCACCCTTATATTCAACAGGGACAAATTACCCCAAGGAACTACAGTGGAGAACGTCTGCTCAGAGCTGAGGTATATGCCTTCCACGCGGAGCCTGGCGAAAGATCACACACTGCTGGTTCTTTGTGACCTCTCCTACAAAAACCAGGATGCTGTAGAGGTGGCCATcTCGTTCCAGCAGGACGAGCAGCCTAACCACAGTCAGATCCAGGAGGCAGCTAGTGCTATAGTCAGCACACTGTCCAAGCGGCACAACAGCACCGTCATGCTGGCCGTCATCGAGGTCAAAGTGGAGATGCCGGTCATGTTCCAGCCAGTGGACTACCTGGTGCCGGTGCTGTGCGTCGTCCTGTGCGTACTCTGGGTCTTCTGTGTCATCGTCTGCGTGTGGTGGACCCGTAAACGGCGAAAAGAGCGCGAGAGGCGGGAGCGCGTGCCCGTGGAGGAGAGCGTCAACAACCAGTGGGAACCGCTGAGGCCCGTGACTCGGCCACAGCACAAGGACAACCGGGACGCGCAGTACGAGCGCACCAAGCTCATGGGCTCCCCGGACCGGACCTGCACCAGCGGGGAGGACGAGGACGAGGTAGAGGAGGAAGAGCTGGAGCTGGTGGAAGAGGGGGGCAAGCGTCCCATCCAAAAGTACTCTAAACCTGCAGCGCGGACCAAGAACGGGCTGATCTGCACCACGCGGAGCAGTGAAAGCAGCAGCGGCCGCAGCAGCCCTTCCCTCAAAGCACCCTACTGGACAGGCTTCAGCCCAAAGGACAAcaactgtaaaaatgtcaataacATCAGCACCGAGCACAAAGAACACTGCGTATGAGCTCAGACGAGCAGGACGAGGAGACCAAGGCCATCTCAGAAACAAGGActgagtttttttcccccatgtgttatttttttattttttgacttcTTTCGAGGCTGACAAAGTGGCAAAtttcttttgttcctttttttatgtacaGAGGAGGCGAATTCTGTTTCGTTATAAGGAGGCGGCGAGAAGCCTCGATTTGTTTTcggagaaaggaaaaaaaaaaactgctggtTTAGAAGCAGGACTGAGGAACTCGCGTGAGAAACCGTATAAAGACTTTTACGTTGTTGTTTACAAACGGTTTTGtgcttttggttttgttttcgaGTGGCCCGATTTCGGTGCAGACCACGTGCGGGGGGTGGGGGGCGCTGGCTTCGGGGGGATCCCCCTTCAACCCTTCATCTGTTCTCCTTCCACGCCTGCCTTACCGAGCTCGTTGTCTATGAGGAGGGCTACAGTGCCTATAAAGTGGCCTTGTTTTTTCTGTCGTCTTGGCTGAacgctctttaaaaaaaaaaacggattgCAGTATTTTGAGTCGGTCGCAAGTGCCTTCGGACAAGCCCCTCGGTTTCAGGGTCTCTTGACCCGATAGATCACGACAAAGAGGAGAGGCTGGTCTTAAGAGCAGCTCCAATATCACCATCAAGGTATTCAACAAAGACAAGAGATgtgtaaatatgtgtatataataaagGAGTCGCTGTGTATATTTGAATTTAGTAACTTaagtcactttttttattattattattataattatggtttaaatattatgattattattgttttttctgtttttctttttttgtttttttttgttgtttttttttttacaccattcCTTTTATTTATGCCAGTTGATATGGCAGGTTTTGTAAGATGTATACAGCGTCCCACAGtcagaacaaaaatataatcagaGATCATCCAATTATgttgttggttttgttttcacTAGACACCTATACGATCGTGTGCTGTATTGTGGCGTGTGTGTTCGCCCTCTTAACACTAGAACTACCAAGGCAGTCATTTTGACCGTTTTTAATTTGGATAACTTTGAAATACAGCCGATATAACTATAATACCCTGACTTTTcctaaatgtgtgtatattttattctaacgttgttattttattaaaattacaaaacgcAACAGA

Function

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0048793 pronephros development biological_process
GO:0031016 pancreas development biological_process
GO:0001889 liver development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005112 Notch binding molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43244 lncRNA upstream 13653 17294375 ~ 17294640 (+) True G29192
TU43233 lncRNA upstream 87677 17220257 ~ 17220616 (+) True G29181
TU43230 lncRNA upstream 88779 17219142 ~ 17219514 (+) True G29178
XR_006250625.1 lncRNA upstream 189187 17090539 ~ 17119106 (+) True LOC122342667
XR_006250626.1 lncRNA upstream 189187 17093963 ~ 17119106 (+) False LOC122342667
TU43253 lncRNA downstream 36419 17385289 ~ 17385680 (+) True G29200
TU43359 lncRNA downstream 204963 17553833 ~ 17554190 (+) True G29272
XR_006250563.1 lncRNA downstream 318280 17667150 ~ 17669761 (+) True LOC122342426
XR_006250674.1 lncRNA downstream 361185 17710055 ~ 17711711 (+) True LOC122343158
TU43407 lncRNA downstream 389197 17738067 ~ 17739667 (+) True G29305
XM_043237833.1 mRNA upstream 14657 17266457 ~ 17293636 (+) True nudt14
XM_043236670.1 mRNA upstream 131796 17122433 ~ 17176497 (+) True brf1b
XM_043236552.1 mRNA upstream 225173 17051947 ~ 17083120 (+) False ppp1r13bb
XM_043237874.1 mRNA downstream 48265 17397135 ~ 17410852 (+) True esr2a
XM_043237875.1 mRNA downstream 48265 17397135 ~ 17410852 (+) False esr2a
XM_043236627.1 mRNA downstream 134563 17483433 ~ 17490295 (+) True LOC122342653
XM_043236626.1 mRNA downstream 134563 17483433 ~ 17490295 (+) False LOC122342653
XM_043236628.1 mRNA downstream 136028 17484898 ~ 17490295 (+) False LOC122342653
TU42966 other upstream 833912 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1322567 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1466438 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 1653112 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 1752611 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 951545 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 1087590 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1534309 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 1941350 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 2382392 19731262 ~ 19786128 (+) False G29835

Expression Profile