RNA id: XM_043237099.1


Basic Information

Item Value
RNA id XM_043237099.1
length 3305
RNA type mRNA
GC content 0.48
exon number 4
gene id ppp1r3aa
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2499774 ~ 2504213 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tattttgaaagtaaCGACAGTGTGGTTATTATGGTGTTCACTTGCCAACAGACTTAAAATATGACTACTGAAAAATATAGTAACAGAATTTGCTAAACAGTTTCATCTAGGTGTTTGAAACCAATGTGCAcgttaaaaaaacccaaaaacagaagcatttaaaacttgTATGTACTTTGATATTGCCAATTTCCCATGTGACAACTAGCACCGGTCTCTTCTACATTTCCAAACTGAAGCATTGTGCTGTAGCGGAACagatatgcatatataattcaAAAGCATTGATCAAAGCTATCAGGTTCAGCAGAGTTCAACAGACGACATGAACACATCAAAGTGTCCCACGTCTACCAGACACTGGTGACCAGGCAGACCAGCATAGTTTGGTAGCACCCGCAGTTATTTTTAAGTCCTGGCAACCACACAATGTTCAGCTGCAACCTGACTCTCTGTGCCTAGTCACGTTGTGAGTGAGGGTTTTAGGCTGTTAGTGTTGTTCCCTCAGACTTTACCCATCCGGCATTACCCAGGCATGTTCTCCTGCAACCTGGAGCCTCCCATCTATAGTGACTGgacaatgaaaaacaacaaggaAAGCGTGAAATCGGAGAAAACGGTGGACAGGATATTAGAAGGAAGCTCTGGAGATGAATCCGAGGAGGCGGAAACCGAGCCCCCACCGGTAGCCGTGCGAAGAAAGGTGTCGTTTGCGGATGCCTTTGGTCTAGACCTGGTTTCTGTGAAGGAGTACGACAACCGGGAGTCATCGAGGCTGGAGGTAGATAGTAGAGAGGGGGAGGAATACTACATCTCATGCCTCTTCAATGTCCCAGCGATGCACCAGGACTTGGAGGTGAGACTTCAGCAGCAGAAGCTGGAACTGGAGCGCATCGAGCTGCTCCCTGGATCCACCACGATCCGGGGCATCGTTCGAGTGCTTAACCTCTGCTTCCACAAGGCCGTCTACGTCCGTGTCACTCTGGATGGCTGGCGGAGCCACTTCGACCTGCTGGCGGAGTACATGCCTGGGTCCAGCGATGGCGAGACCGACTGTTTCTCTTTCCGACTCGTTTTGACGCCTCCGTTCCAGGTCCGAGGGTTGCGGGTGGAGTTCTGTCTGAGGTACGAAAGCTCTGTTGGAACCTTCTGGGCCAACAACGGAGGGAAGAACTATATTGTCTTCTGCCACCAAAGACGCAGGAGCgatctgaaagagaaagagagtgaaatGGAGAAGCTGGTAGAGGAGATTAACCAAAAAGGTATCAGGAGCTGCCTTAAAACAATCAGtaaaaagacCTACTCAGAGGCGAGCGGCGAGATCTCAGaagaAGTCACACACATGGCCGGGTATACTAGCaagaacaaaacagagaaagaagCAGGAATCAGCTCCTGCAAATCCCTCAAGGACTGCTGCAAAACTCTGGTGGATCGTCGTAGGAAGCGTCAAGCTGCTCGTTTGGCTCGAGTGCAGGACTACTTTGCTCAGAAGGCAATGGAAACACAAGTGGAATGTAATCCTACCACATCCATCCCAAAGCTGACTCCAATAAACTCGCCGGTTTTCCACAGCCAGCAAGGATACAGTATGGACACGCCACCAATAATAATGTACCACCAGATTCCTTTGCTTGCCATGGATTGGGGCAGTACCACAACAACACCACCCCAAGCAAGCCCTCCAGATGCCTACAGTAAAACAAGACAGGTTGAAGATCACCTAGCCATATCTGCCTCTGAGGCATGGGTTACATTTTTTAGCAGCACTGATATGCAGCATCAAGTATGTGTTCCTCCAGAGTCAGACGTTTTAGTCCCAGTGGAGGACAAGGGATCCGAGAAAGACCACAGTCAAGAGGCTGCTGACAGGAAAGCAATGGAAACCATAAAATCCGATCCCGTAGAGCAATCAAAGGCTCTCAGCACGAGTCCTCCTAGAGATCAGGTTGTGGATTACCAACTAGCAAAAGAGCCAAGGGTCACTACCCTACCAAGTTCTGCCCAGGGATCGAAGCCAGAGAGGGCGGGAAGTGAGTTAAAGCCACCTTGTGACTGCCAAGCCCCACATCACGAGCACACAAGTGGATCTTTGAGTCGAGACACGGCCAAAGCAAACCCCGGGGATGAAACCCGAACCGCACATGACACCGAGACTAAGAATTCAAAAGCCAGAGATGGAATCTCACCTGAAGAATGCACAGGCAGCTCCGACACCTCAAAGGTTAAAGAAAATACACAGAGAGCGGTCAAAGACACCCTGACATTTACGGGGGTCATGGACGTGCCACTCACAAATAGACAGGCCGAGGGATCTTCTTCTGAAACGAGGgatataaataaagatgctaGCGAGGAGCAGGTGGAAATGAGGGTGCTCTGTAGAGAGCTACATGAAGAGGACACGGAAAGCAGTAGAAAAGGACAAGATGAGACAACTACGGATCACAGCGCAGAAATACAGAGCGTTTCATCGTGCGAGAGCGAGGCATTTAATGAGAACGAATTATGCACGTCGAACAAGAGTTTTAACAAAGACAATTCAGAGCTACTGAAAAACGAAGAGAGGCGTTTTGAGGCAAACGAAGGACTTAAAATGAAGGAGATGACTGTAGAAGCTGCTATTGTTGAAGAGGATGAAATGCATTCAGAAGAGCTTATAGAGAACTCCCGAGCAGTGGGCGACAATTGCACAGATGGAGAAGAGAAAGAGTTTGAGGTACAAGCTACCAAACTAGCACCCACTCGCTTACCTGCTTGTCTGACAGTTAGCACTGACCCACCCAGGTTCCTCCTTCGGACTACATCTGCAGAAGAGGATTTTGAGCTTGGGAAGGCCCTCAGAAACTTTCAAGAACCCCAGCGACCGGACGGAGAGGACGAACTCTCCACACCGCTACCCAGCATTCACCTGTCCTGGGTGGGCGGCAACAGCAATAGGCTGTTGAGAGAATTCTGCTCTCTGGGTCACACGGCTAAGGCTCTTGTGTACGCTATTCTGTTTGTGATCTTCATAACAGCATATCTCTACGACCTTCCGACCTGCATGGCCCTCTATCTGTTTTCTCTGTGCTGGTGGTGCAGCCAGGGCATGAAGCACCGACTCGACGGGGCTGTTGATGTGGACTGAGACCAGACAGGAAGTTCTTGAAGTTTCTGAGAAAGTTGTTGTCAAATTATGTGTGACTCTGGAACAGAAAGTGATTCTATGGGCCCAAAATCACTTGACAGAACAAGATGTagtagacttttttttgtttgtttcttcacactTGTGTTCCCATTAAAAGTCCCTTTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37702 lncRNA downstream 26740 2472284 ~ 2473034 (-) False LOC122342907
XR_006250773.1 lncRNA downstream 210655 2279226 ~ 2289119 (-) True LOC122343417
TU37692 lncRNA downstream 215996 2283285 ~ 2283778 (-) True G25362
TU37686 lncRNA downstream 220492 2203585 ~ 2279282 (-) False LOC122343417
XR_006250783.1 lncRNA downstream 317105 2167305 ~ 2182669 (-) True LOC122343454
XR_006250774.1 lncRNA upstream 29995 2534205 ~ 2538006 (-) True LOC122343423
TU37715 lncRNA upstream 30862 2535072 ~ 2537458 (-) False LOC122343423
TU38074 lncRNA upstream 475949 2980159 ~ 2996458 (-) True G25625
TU38062 lncRNA upstream 502560 3006770 ~ 3012214 (-) True ccdc3a
XR_006250573.1 lncRNA upstream 612194 3116404 ~ 3117297 (-) True LOC122342459
XM_043237102.1 mRNA downstream 26706 2472292 ~ 2473068 (-) True LOC122342907
XM_043236237.1 mRNA downstream 28502 2467087 ~ 2471272 (-) True gpr85
XM_043237098.1 mRNA downstream 76311 2415666 ~ 2423463 (-) True tmem168a
XM_043236832.1 mRNA downstream 124065 2299635 ~ 2375709 (-) False dock4b
XM_043237853.1 mRNA upstream 279251 2783461 ~ 2823147 (-) True tfec
XM_043237855.1 mRNA upstream 279251 2783461 ~ 2797146 (-) False tfec
XM_043237856.1 mRNA upstream 279251 2783461 ~ 2795817 (-) False tfec
XM_043237854.1 mRNA upstream 279251 2783461 ~ 2794368 (-) False tfec
XM_043237897.1 mRNA upstream 331638 2835848 ~ 2845005 (-) True lta4h
XR_006250644.1 other downstream 124058 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other downstream 124058 2304346 ~ 2375716 (-) False dock4b
XR_006250653.1 other downstream 411195 2042953 ~ 2088579 (-) True cald1a
TU37444 other downstream 597207 1901843 ~ 1902567 (-) False rsph9
TU37319 other downstream 844967 1653591 ~ 1654807 (-) False ccdc167
TU38086 other upstream 516852 3021062 ~ 3021457 (-) False LOC122342805
TU38175 other upstream 1030627 3534837 ~ 3547467 (-) False LOC122342819
TU38177 other upstream 1044016 3548226 ~ 3577096 (-) False LOC122342819
TU38193 other upstream 1096790 3601000 ~ 3601974 (-) False LOC122342822
TU38194 other upstream 1098148 3602358 ~ 3604270 (-) False LOC122342823

Expression Profile