RNA id: XM_043237129.1


Basic Information

Item Value
RNA id XM_043237129.1
length 1833
RNA type mRNA
GC content 0.45
exon number 13
gene id si:ch211-244b2.3
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13461043 ~ 13465673 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGCATCCAGTTGGTTCACATTCATCCGCAGAGAAGCTTGTTTCGGAAAGTCGAAAAATAGTCTGAAAAGAAAGCGAAACCGTGTCAGCGCCTCGGCGGTGAAGCGCTTTAAATCCTGTCCGAACGAAACGGCGGTACGTTTTATTCGGCAAATacgttttgtagttttttgacATGCTATCGATGGTAGTCTCCAGGAACTATTATATTCGCGTGAAGATGAATTAAAGCAAGAGAAGCTATGAATTTCGACCCGGCTGTTGTTCTTCGGGGAAAGGGAATAACAGAATTACCTAACAGCAGCATGGCGACAGCCTCGGGTAATCACTTCGAGTGGCAGCTATATAATGGACAGCAGTGGGCTtctatattaaatgattttattatcgAGGCCCATTACTGTCAACCGGGGGCAAACGGGATCACCATCAACCTCACCTTCGGGAATGCCTATATCGACTTCGACGGGATGACGGTCGACGGGCCTCTTGTCAACCTCAGAGTACGACGCAACGCGCTCCTGTCTCCCGACCAGAAAGAAGTGATCGGCTGGTACTACAGAGATAACCAGCGCTGGTGCGAATACGGATCGGACGGATCGGGTGGGAGGTCATCTTCGATCAAAAGTGATTTCATGGAGCAGCAGTACGTGAAGAACCCGAGTGGCTCTTTCCAGTTTACTGTAGGAAGCATGACTTACAAGGTGGACTTCGCTCATATGACTCAAACCAATCTGTCCACGAAAATGTTGAGGAACGTGAGACGGCGGCCAAAATTCAACGAAGTAGTAACGGACAACAGCGGCAATCTAAACAGTTTACCGACTCTGGCATCTCCCTCTGCAAACCCTTCAAATTCGTCCTCTCATTACATCTGGGAGTTTATGGATGATGAGGGTGTTTGGGCCGAGTACCAGAAACCCGGATGTTCGCTGGACAGTGCAGAAATCGAGAGGTTGTATCGGCTTAACCCGCAGCGCCAAGTTTCATTCACAGTCAGGCGATTTACGTACACTCTTTACTTTGTTGGAATGTATCAAGTCAACAATAAATACGGCACGAAAAGAGCTGTCAGGAGAACTGCCAGTGAAATCCAGTCAACAAACAGTACATCATCCCAAGCTCGCTGGCAGTTCAAAGACATGGATGGCAACTGGAAGGACTACGTTAAAGGCGCTTCTCGGGGATGCTGCAGTGTTTCGAGCGAAGACATCGAAGCGCGGTACGGGCTGGACTCCACTGGGACGATGAGTTTCACAGCGGGCAGGTTCAGCTACAAGCTCGACTTCTCAAGCATGACGCAGACCAACCTGTCCACCAACACGGCGAGATCCGTCCAACGCCTTCTGCCATGAAACCCTCACCTGCCTCTTTTTATGTGTACTTTAACATTTACACGAAAGATCTCAGGACGCCGGTTTCTTTCTCGGAAAACGGGATGCCAAATGTCAAAATTACGTTTACTTTATGCTATAACCCATGTGCCTGTGCCGTTTtgataatagaaaaaaaaaaaaaaaaaaaaaaaacatggttccCGTGGTGATCACGTTCTTGAaaggatttagtttttgttttcttttcaatatatatatatataaggataCGAAGACTGCTTTCCATGTGCAATACTTTTATGACAGCTTTCAACATTCATGTCTGCACGTCttgttttgttgattaaaataatatataatgttgaaTATATAATGAGGTGCTGACACCTACTGGGtaattcattttctttgaatttttcaCGACTtgcatgttgataatgaaatgttaaaaaatgtttattaaaacttaTAAATTGAACTCACTACATTCACAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42096 lncRNA downstream 28340 13428164 ~ 13432703 (-) False G28397
TU42094 lncRNA downstream 28374 13428028 ~ 13432669 (-) True G28397
XR_006250599.1 lncRNA downstream 116786 13343726 ~ 13344257 (-) True LOC122342564
TU42067 lncRNA downstream 141295 13311873 ~ 13319748 (-) True G28377
TU42040 lncRNA downstream 209009 13250651 ~ 13252034 (-) False G28359
TU42147 lncRNA upstream 144544 13610216 ~ 13612771 (-) True G28434
TU42310 lncRNA upstream 355024 13820696 ~ 13827052 (-) True G28545
TU42337 lncRNA upstream 401105 13866777 ~ 13867298 (-) True G28564
TU42309 lncRNA upstream 403750 13869422 ~ 13870614 (-) True G28544
TU42341 lncRNA upstream 414359 13880031 ~ 13880847 (-) True G28568
XM_043236710.1 mRNA downstream 20940 13433309 ~ 13440103 (-) True usp44
XM_043236707.1 mRNA downstream 57827 13384588 ~ 13403216 (-) True fgd6
XM_043236711.1 mRNA downstream 76597 13376174 ~ 13384446 (-) True nr2c1
XM_043236714.1 mRNA downstream 85700 13373631 ~ 13375343 (-) True ndufa12
XM_043236433.1 mRNA downstream 99107 13345955 ~ 13361936 (-) False tmcc3
XM_043237134.1 mRNA upstream 356 13466028 ~ 13470349 (-) True si:ch211-244b2.4
XM_043237136.1 mRNA upstream 356 13466028 ~ 13470329 (-) False si:ch211-244b2.4
XM_043237133.1 mRNA upstream 356 13466028 ~ 13470325 (-) False si:ch211-244b2.4
XM_043237135.1 mRNA upstream 356 13466028 ~ 13470268 (-) False si:ch211-244b2.4
XM_043236773.1 mRNA upstream 19114 13484786 ~ 13494427 (-) True st8sia1
TU42098 other downstream 38504 13411624 ~ 13422539 (-) False G28397
XR_006250598.1 other downstream 99105 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other downstream 99105 13316932 ~ 13361938 (-) False tmcc3
XR_006250596.1 other downstream 99105 13324525 ~ 13361938 (-) False tmcc3
TU41786 other downstream 971887 12482102 ~ 12489156 (-) False cpm
XR_006250767.1 other upstream 227273 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other upstream 227508 13693180 ~ 13698715 (-) False LOC122343399
XR_006250741.1 other upstream 349902 13815574 ~ 13831851 (-) True LOC122343280
TU42363 other upstream 509685 13975357 ~ 13980559 (-) True G28575
TU42429 other upstream 703750 14169422 ~ 14176725 (-) False cerk

Expression Profile