RNA id: XM_043237133.1


Basic Information

Item Value
RNA id XM_043237133.1
length 1817
RNA type mRNA
GC content 0.42
exon number 10
gene id si:ch211-244b2.4
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13466028 ~ 13470349 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttacatttttatatttcttcatCGTGGGCTAAATAACTAGTCAAAGAGTGTAGttattcgtaaaaaaaaaaaaaaaaaaaaaaaaaaacgctgtgtatttgaatatatgcaGGTGCTTACGATAAAATGAAACCGAAAGAATATAGGCCGTGTGTCATTTATGAACATGGCCTCGAACTGTCAAGAGGATTCGGACGAAGGCAGCTACCAACTATCTAATGAGAGTTCCTTAGAGTTTAGCGACACAGACTCCGAGGCAGAAAACGATTCTGGATCTGGCGTCGAAGATGATGGAGGAATATCTATCGAGCAGAACGTCTGTACGTATTACAACCGCGGCAAGTGTCGTTACGGAGATGAGTGTAAGAACGTGCACATATGCAAGGACTTCCTCAAGGGTTCGTGCAAGTTCGGTGCCGGATGTCGTCTGAACCACAACAGTCGGAGTTCAGGACGGGGCAGATCCTCATCTGAGGATGAAATATTTGAGGGGCCCTACAGATGGCAGATGAATTTTCAAAAGGGCTGGAAAAACATTTGCAACGATCACATTCTGGAAGCCCAGTATTCACTCCCCAACACTAAAGGAATCAAGCTCTACAACACCCAAGCTGGGGCTGTATCGATCGATTTCACTAAAATGAGAGTTCTTCAGAAAACCAATATTAAGGTGCGTCGTCTGAGCGCGGGGGATACAGAATGGCTGTGGTATTACAGGGGTGACCACTGCTGGTGTCGGTACGGAGGCCAGGGCAAAGCCAGTGCAGTTCAGAGCTCCCAGCTGGAGACGGCGTATCAAAACGACCGCCATGGTTCATTCAAGATCGCCATCGACTCTACTCAGTACGAGATTAGCTTTAAAGAAATGTGTCAGAGAAATTTATCGACGGGCAATAAGAGGCGGGTTAGACGCCGCCCTAAATATGAACCACCTCAAAATGGAGgGTTACTTGGAATAACCTCTCAAATAAGAACCCTTTTGAGCCCTTCGACTCCAAAGTGGCAGTTTGAAGGGAGCAATCGGTGGTACACCTTCAAGAAGAAGCAGGGAGGCTGTTCAGTCTCGAGTGCCGACATTGAAAACTGTTACCAGCAAAATCCGACAACCATGAGTTTCACTGTGAATGGCGACGGTTACGTTCTGGATTTTGCAAagtTGAGTCAGGTTAACCTCAGAACAAAGGCCGAACGCAAGGTCAGGCGTGTGTGAAGTAATAAGGAAGACGTCAGGTCGTCCTCGAGATCCAAACCAGCAAATAAGAGTCGAATTTTGGGTGGAAGTAGACAAAACGTTAAGTGATTTTTGACCCACATGGATGTTAGCGAATatgattttgaatgtttaatcaTCCTGAATTACTGTATTGTTTGGAAAACTGTGTGTGgaaaatagaatttattcagGTATTTTGTcgtatattaatttaaaatcctCTTTTGACGTGACCTAAAGCATATGTTTTGCTTTCCGTTTATTTTCACAgaattatgctttaaaatgctatcactttttttgttattctgtaAATAGTAGGCGATGGGCCATAACAATACAAGCATTACactgctttacttttttttcttttttttttttttttttttttttttaccataattTACAATGAAGTGCCTGATGTCGAAAACTGCCTGACGACCAACGTTTACGCGCTGCTTGTGAAACCTTgttcagtttcatttttcatctgTAGGGTATAACCTgcacaaaagattaaaaaagaaaaagatcagGCGTATGCACAATAATGCTGTGTGAATGATGTGTAATGTGCAATAAAACCTACAATGTTATGCAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42096 lncRNA downstream 33325 13428164 ~ 13432703 (-) False G28397
TU42094 lncRNA downstream 33359 13428028 ~ 13432669 (-) True G28397
XR_006250599.1 lncRNA downstream 121771 13343726 ~ 13344257 (-) True LOC122342564
TU42067 lncRNA downstream 146280 13311873 ~ 13319748 (-) True G28377
TU42040 lncRNA downstream 213994 13250651 ~ 13252034 (-) False G28359
TU42147 lncRNA upstream 139891 13610216 ~ 13612771 (-) True G28434
TU42310 lncRNA upstream 350371 13820696 ~ 13827052 (-) True G28545
TU42337 lncRNA upstream 396452 13866777 ~ 13867298 (-) True G28564
TU42309 lncRNA upstream 399097 13869422 ~ 13870614 (-) True G28544
TU42341 lncRNA upstream 409706 13880031 ~ 13880847 (-) True G28568
XM_043237130.1 mRNA downstream 355 13461043 ~ 13465673 (-) False si:ch211-244b2.3
XM_043237129.1 mRNA downstream 356 13461043 ~ 13465672 (-) False si:ch211-244b2.3
XM_043237132.1 mRNA downstream 357 13461043 ~ 13465671 (-) False si:ch211-244b2.3
XM_043237131.1 mRNA downstream 357 13461043 ~ 13465671 (-) True si:ch211-244b2.3
XM_043236710.1 mRNA downstream 25925 13433309 ~ 13440103 (-) True usp44
XM_043236773.1 mRNA upstream 14461 13484786 ~ 13494427 (-) True st8sia1
XM_043237931.1 mRNA upstream 32611 13502936 ~ 13513404 (-) False b4galnt3a
XM_043237932.1 mRNA upstream 32611 13502936 ~ 13512237 (-) True b4galnt3a
XM_043237996.1 mRNA upstream 165288 13635613 ~ 13648049 (-) True slc6a1l
XM_043237995.1 mRNA upstream 182200 13652525 ~ 13665137 (-) True LOC122343493
TU42098 other downstream 43489 13411624 ~ 13422539 (-) False G28397
XR_006250598.1 other downstream 104090 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other downstream 104090 13316932 ~ 13361938 (-) False tmcc3
XR_006250596.1 other downstream 104090 13324525 ~ 13361938 (-) False tmcc3
TU41786 other downstream 976872 12482102 ~ 12489156 (-) False cpm
XR_006250767.1 other upstream 222620 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other upstream 222855 13693180 ~ 13698715 (-) False LOC122343399
XR_006250741.1 other upstream 345249 13815574 ~ 13831851 (-) True LOC122343280
TU42363 other upstream 505032 13975357 ~ 13980559 (-) True G28575
TU42429 other upstream 699097 14169422 ~ 14176725 (-) False cerk