RNA id: XM_043237139.1


Basic Information

Item Value
RNA id XM_043237139.1
length 2451
RNA type mRNA
GC content 0.43
exon number 15
gene id LOC122342931
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13750834 ~ 13760856 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGTCTGTGCTGTCCTCCGTATCTCTGAGAAACCCCAGCAATTTATTTGTAGAGAAGTGACCTGTTGACATGATAAAGAGATGGACGTGACCGCTTGGTTACTGATTAGATGTCGTAACGCCGAATGACAAAGCCTCCATCCATTCTGAGGGACACAGGCAACAGCACAGATGATATTTTCTGTTCTGTAAACAGTGGGCCCTGGaaaaatatactgtactgtCATCTGACATTCGTATTGTTTCCAGGGCGTCATGAAAGAGGGAAAGAAAACGACGCGAGAGCCATGCTGCTCCAAATTGAAGCATTTCAGGGCAGCTACATGAAGAGCTCTATCACACAGATTGAGAGGCGTTTTGACATTCCCAGCTCGCTGATTGGATTCATTGATGGAAGTTTTGAAATCGGTAATCTGCTTGTAATAGCACTTGTCAGTTACTTTGGTGCTAAGCTTCACAGACCACGACTCATTGGAGCTGGATGTTTAATCATGGCCATGGGATCCTTCATAACCGCGTCACCACATTTCTTCCAAATACCGTACAAATATGAAACAACAATTTCACATGTCTCTGCCTCTAATGGTACAGAGAGTATTCTACCATGTTTAACCAATGGGAGTTTAGCACAAGATGAAATTCCCACAGTGGAAATTCAAGCAGaatGTGAGAAAAAAGACAGTTCCTCCTTGTGGGTATATGTGTTTCTGGGGAACATGCTTCGTGGGGTAGGAGAGACTCCAGTCATGCCTCTTGGGTTGTCTTATCTGGATGATTTTTCGAGGGCAGAAAACACTGCCCTTTACATTGctctcATACAGACTGTGGCAACAATAGGGCCAGTGTTTGGATTTATGTTAGGATCTTTCTGTGCCAAGCTCTATGTGGACATAGGAGCAGTGGACTTGGATACCATCACCATCAACCACAAAGACTCACGTTGGGTTGGTGCCTGGTGGTTGGGTTTTTTGTTAACTGGTGGACTGATGTTATTGGCTGGAATTCCTTTTTGGTTCCTTCCCAAATCTCTTCCTAAGCAGGGTGAGACTGAAACTGAGACAAATTCTAATGTAGAGAATGAACAGGACTGTTTTATTCatgacaacaacaaacacaGTAATGCTCCAGACAAACCAGCTCTGGTCACCATGGCAGCTCTGGCTAAAGATTTTTTGCCATCACTGAAAAAACTCTTCAGCAACACAGTTTACATACTCCTGATTATTACCACTATCATACAAGTCAATGGTTTTATAGGAGTATTGACAAGTCAGCCAAAGTACATGGAGCAAACCTATGGCCAGTCAGCATCAAGGGCCATATTTTTAATAGGCATTTCAAATTTACCAGCTGTGGCTTTGGGAATTGTCACTGGGGGGTTTATAATGAAGAAGTTCAAACTTAATATTCTTGGGACATCCAAGTTCTGTGTTACAACATCTTTTTTGACTTCCTGTACGTGGCTCGTTCAGTATTTCTTGCAGTGTGAAAGCTCACAAGTTGCTGGACTTACAGTATCATATCAAGGGGCTCCAGAGGTGTCCTACCAGCTAAATACACTAATTTCTCCATGTAACATGGGTTGCACTTGTTCTCTTAAGCACTGGGATCCCGTATGTGCTAACAATGGCTTGACCTATGCCTCCCCTTGCCTTGCTGGCTGCCAAACCTCCACCGGAGTTGGCAAGGAGATAGTATTCCACAACTGCACCTGTGTTGGAGATTCGCCTCTTCCGTATGCAAACATGTCAGCAGTGCTGGGCCAGTGTCCTCGAAAGAGTGATTGTGACTCCATGTTCAAGTTCTACATGGCGGTGACAATCATTGGTTATTTTTTACCAGCTTGCGCAGCCACACCAAGTTACATTCTTCTGCTCAGATCCATAAATCCAGAGCTAAAATCTTTAGCTCTTGGTGTGCATATCCTGCTTTTTCGGGCTCTGGGTGGCATTCCCCCTGCAATTTACTTTGGAGCCTTGATTGACAGGACCTGTCTGAAATGGGGCACAAAACAATGCGGAGGGAGAGGAGCGTGTCGTATTTATGATTCTGGTGCCTTCAGAAATTCTTACTTGGGTGCTATTTTCACCTTGTTTACTGCAACCTTCGTGCTGTATGGAGTCCTTTACATTAGACTGTCTCATCGAGAAAGGAAGCAAGCTCTGAAGTCCCAATCGAAAGCTCCAGAACGGGATGGAATTGGTGTTACTACCGTCAACAGGAATGTATCTTCAACTATCctaaaatgtgatgaaaatccAGACCAGGAGACCACTATCTGAAGTCTTCAGAAGTCAAATGtgttatttacacaaaaaaactgttacaAAGATATAACTGGTACAtgggaaatgtaaatgttttggcTGTTAAATGTTGTTAATTTGTATGCTTACTGAGTGGATGATGTTTGTGAAGAAAGACTTTTAAAGTTTAACTTATGCTACGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42147 lncRNA downstream 138063 13610216 ~ 13612771 (-) True G28434
TU42096 lncRNA downstream 318131 13428164 ~ 13432703 (-) False G28397
TU42094 lncRNA downstream 318165 13428028 ~ 13432669 (-) True G28397
XR_006250599.1 lncRNA downstream 406577 13343726 ~ 13344257 (-) True LOC122342564
TU42067 lncRNA downstream 431086 13311873 ~ 13319748 (-) True G28377
TU42310 lncRNA upstream 59840 13820696 ~ 13827052 (-) True G28545
TU42337 lncRNA upstream 105921 13866777 ~ 13867298 (-) True G28564
TU42309 lncRNA upstream 108566 13869422 ~ 13870614 (-) True G28544
TU42341 lncRNA upstream 119175 13880031 ~ 13880847 (-) True G28568
TU42346 lncRNA upstream 120449 13881305 ~ 13882012 (-) True G28569
XM_043236996.1 mRNA downstream 1846 13736605 ~ 13748988 (-) True LOC122342857
XM_043237143.1 mRNA downstream 21400 13718604 ~ 13729434 (-) True slco1d1
XM_043237144.1 mRNA downstream 21480 13718604 ~ 13729354 (-) False slco1d1
XM_043236233.1 mRNA downstream 33611 13708792 ~ 13717223 (-) False slco1e1
XM_043236234.1 mRNA downstream 33739 13708792 ~ 13717095 (-) True slco1e1
XM_043237565.1 mRNA upstream 2534 13763390 ~ 13784708 (-) False LOC122343235
XM_043237564.1 mRNA upstream 2534 13763390 ~ 13784708 (-) False LOC122343235
XM_043237563.1 mRNA upstream 2534 13763390 ~ 13784708 (-) True LOC122343235
XM_043237662.1 mRNA upstream 66335 13827191 ~ 13831851 (-) False LOC122343280
XM_043237661.1 mRNA upstream 66335 13827191 ~ 13831851 (-) False LOC122343280
XR_006250767.1 other downstream 52119 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other downstream 52119 13693180 ~ 13698715 (-) False LOC122343399
TU42098 other downstream 328295 13411624 ~ 13422539 (-) False G28397
XR_006250597.1 other downstream 388896 13316932 ~ 13361938 (-) False tmcc3
XR_006250741.1 other upstream 54718 13815574 ~ 13831851 (-) True LOC122343280
TU42363 other upstream 214501 13975357 ~ 13980559 (-) True G28575
TU42429 other upstream 408566 14169422 ~ 14176725 (-) False cerk
TU42539 other upstream 935004 14695860 ~ 14697186 (-) False LOC122342862
TU42549 other upstream 1047741 14808597 ~ 14810137 (-) False LOC122342642

Expression Profile