RNA id: XM_043237147.1


Basic Information

Item Value
RNA id XM_043237147.1
length 5001
RNA type mRNA
GC content 0.47
exon number 5
gene id erf
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27725121 ~ 27751872 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGatagaggaggaggaggaggagagagagagagttacaCGGAGTGAGTGGAAAAGGAAAAAGTCCgtggaaagagagggagaaaagtGGATCGGGCATTTCTGTCTTCgcgtttgttttgattttgtcgACTTCGCCTCGTGTTTCAGCGAGCAGGCTCGAATATGCAACTTCGCAGCGCGTGTGAAGTGATCAGGAGTTCAGCGCGGACGCGGTCCTCTTCCATCGGCACGACGCGCTCCGATATCTGACCGCGAAAGAGCGATTCTGTCCGGCCACACGGCGAGCGGCGAGCGTCCTCCACGTTGGGGAGGGAAAGCAAAACGCGAAAACTCCAAACAAACCGGGGGAGGACGAGCGAAGGGGCTGGATTCGAGGAGGAAAAGTTTACAGAGGAGTTTTGTGTGCGATCCTGAGCTCGCCGAGAGGAAGAAGTTAATttcatctctccctctctctctttctcactcactCTTTCTCAGTTAGCACGACTGCTAACGAAGCGGCTATACTCTCCAACATGAAGACCCCGGGCGATACGGACTGGGCCTACAAGCCGGAGTCGAGTCCTGGTTCCAGACAGATCCAGCTCTGGCACTTCATCCTGGAGCTGCTGCGGAAGGAGGAGTACCATGATGTCATCGCCTGGCAGGGGGATTATGGCGAATTCGTCATCAAAGACCCGGACGAGGTGGCACGACTGTGGGGCGCCCGCAAGTGCAAGCCCCAGATGAATTATGACAAGCTCAGCCGAGCGCTCAGATACTACTACAACAAAAGGATCTTGCACAAGACCAAAGGGAAAAGATTCACCTACAAGTTCAACTTCAACAAGCTGGTTCTGGTCAACTATCCGTTTATTGACATGGGCTCTGCAGGTTCTGGTGTTCCACAAAGTGCACCGCCTGTCCCATCAGGTGTAAGCACTCATTTCCGCTTCCCTCCATCCACGCCATCAGACGTCCTTTCTCCCAGTGAGGAACTGCGTAGTCCCGGTGTCTTCAGTGCTGTGCCTCGGCGCATAGCTCGTGGCTCCGTCTCCGACTGCAGCGATGGCACCTCCACCAACTCGGAGCTTGAGGAAACTGGCCTAGCTCCCGGTGATGAGCGCCCGGCCGACCGTGCCTTCAGAAACCTGCTCCATCCGCGCCTGTCCCACGATTCATTGTTCCGTGTCTACGGTGCACCTCCCAACCCAACTGGGCTCCCCAGGAGCGGGCCCCATGCTCCCCCACACAGGGTCCACCCCGAACCCTTGTCTCCATTCCCAGTGTCCCCCCTCCCAGGCCCTGGAGGCTTGCTGGCTCCTGCTCTTTCTCCAGCTCTCTCCATGACCCCTACATCTCACATGGCCTACACACCTTCTCCATCCCTGTCACCCATGCTGGGCTCCCACTTCTCGTTCAATCCAGAAGACATGAAGCGTTACCTGCAAGCTCACACTCAGAGTGTCTACAACTATCATTTGAGTCCCCGTGCGTTCTTGCACTATCCCAATATCGTCATCCCCCAGCCTCAGCGCCCAGACAAGGGACTAGGAGCACCAGCGGGTGTAGGTCCACACCTGTCAAGTCACCCTCTGCACCATCAGGCTGAGGAGCCTCATCTATCTCCGTTCAAGTTTAAGTTGCAGCCACCACCGCTGGGGCGCAAACAGAGAGAAGGGCCAAACCTGACAGGAGCAAATTCTGGAAGCGCTGTTGCTTCCTTCTCTTACAGCGGGGAGCCTGGTTCAGCCTCAAACTCTGCTTCATCTGGAATGATGACCAACAACTCAACCCCAGCTGGACCACCAAAGATCAAGGTTGAGCCTATCTCAGACATGGAGTCGGAGGAAGAAGTTGAGGTCACCGACATTAGTGAGGAGGAGCAAGAAGACGATGAATGTGATGTCTTTTCCCCTCCCCATACCAATGGTGGCCTCGCCCCTCCACCCAACCACGATCGCatgactgatgatgatgatctcGAGGAAGATGTCTTCAAGACCCCAGCTGCCCCTACCTCAGGGCTTGGGGTAAATCTTTTAGGTCTTAAAGCAGAACCCCGAGAGCTAAACCTGGTTCAGGGCGCTCCCATTAGCCCCGGGGGTACGCGCTGCATCCCTCTGAAGCTGCGTTTTAAACGTCGCTGGAGTGAGGACCAGCGAATGGAGGCGGGAACCGAAGAGGCTGAGGACAAGAAGAGCAGGGCAGAGAGGGAAGAACTTAGCCAGGATATGGAGCCTAAACTAGGGGAAGAAAATGGAGAGAGGAAGAGTCCGGAGACTTTGGCTGCACCTCTAGGGACGGGCCAGAGGAGGGTGAGCTCTGAGCTGCAGCGAGCCACAGCACAGCTGTCATTAGAAAACAACGTTTGCTGAAgaagacaaacacaaacttACCAACACAGAGATGTCCTCCTTAAGGGCTGAAGGTAACTGTTGCTCTCAGAAGTTACGTGAAGACCACCCATTCAGCATGTTTGGATGTCCAAACCATCTTTTAAACTTCTTTACATGCAGGTTCACTCACTTCAAAATGTTGCAAcactaaaaattattaatactgactttttaaatgcattttaagtaacAAGGCCCCTTTCCCAAGTTTAGCCAGAGCCCCTTGCTTACCGAACCCATTCCTTCTTGTTTGCTGTGTTAGACTAACATCATCCCACTAGTattcttggacactttttctCTCCCCAAGAAGCTCTCCGTTAGGATGTAGGGATCAACcccaatattttttattttttttttggtaaatcaaGAGATTACAGAAGTGCCTAAACCGGACATTGATGCACCCCTGTAAAATATGGGATCTTTTCCCTatgatgctttctttttttttttttttttcttttttttttgtcttgtcatTTATGCCCATAAAATTTTGTCATATGGTCACAGGCAAgtggacattttatttaaatagacaCTCTTGGATGAAGTGAAAAATGCAGGAAGGATGCTGGCACCACCTCGGACTCAAGTTCTCAGACTTTGCGATtacagacacttttttttttttttttttgcttactaAGATTAAAGTCCCAGACTTTTTGCAGAACCAGCTTGACTTTCGCTCTCAAACCAGACTCTTCATGTCACTGCCTTCAGAGCCAATAACGCTAGCGTGCTATCAGCCTTCACTGCCGGCTCCGGACACCAACTTTCCTAGCTGTTCAGCAAGCTCCGCCGGCTGACGGGACCACTCGACAACCTCTTAACGCATCTTaacacgtgtgtatatatacattggGGGATCCGTTTTATATATGTAAGTCCATGAACACCAGCTGGATGACAAATTGTAGATCACGTATGATTATTCCTTCTccaacgtatttatttatttttttataatgcagttTTAACCTTGAGGGAACGTAATAGGAACATTGGGGCAACGTATCAGAGGGCGCTTTTTGGTTTTAGCTTTGTAATCCACCCTAAAACCACTTAAACAATCCTGTACACCCTGTCGTTTTGTAAAGAACGCAAATCTTCTTGGTTTGTTGACGGTAAATCTCAGGCATACCACCCCACACCCCTTTCCTATCCAACAGGTAATCTTTGAATATAAAGCCttcaaatgaacaaacatttgTGCCTTTTTACGGAAGACTGACCGCCCAGTGCTTTTCAATGGGTTGCTTTATCGACACGTACAAACTCAAATACAGGAGAGGCCTTAGAAACACGACCTCAAACACTGCTTTTATGCCTTATTTAGTTTTGTACCTTAGAAGAAACTATCCTAAATAAGATTTGCATTTAGAGTCCATATATTCTCACTTTATTGCACGATAGTcgtatatatttgataaaagaACAAACGCTGGTTTTgatacaaattatatttcaggAGGGAAATCTATATGGTAAAGCTACGTCAGCGGGATGTTTAGTTTCAGGGCCCTGCAGTGCTTTATTGCGAAAGAAAAGTGTTGTTCTAGACAAAGTTAAACACAACTGACCAGTCTTTGAGAACCCTGAATGGCACAGCTGTCCTCGGCCTTGTAAGGTCTACGTATAGTTTTAACACGACCCGTCGCATTTGCGTTCTCCGTCTCAGTCTCTCTGCAGTGTTTTAGTTGTAGGAGGCTGCTCTTTACCTACGATGATCGAGATCGAACAGGTAACACATCCTATTTGGCTTACTGTTTGGCTACGGCCGGCTCCATTTGTAGCAAAATGCAGGGACTTCGTAGTCAATGACGACCTGGAGAAAGGGACCTCACTTCACCGAACTGACAAATAGAAAGTGGATATTCAGCCTCTTAGCCCTCACCTAAGGAGGAAGTATAGGACCTGACACACTTAACActcatttttctttcctctatttacttttttggagTTTGTTTGGCGGCCTTACACCGGTTCAGTATCTGTATTTTAACTGACAGCTGCCTTATTTGTTAGAAAATACTTTTTCCTCTCGCTCTTTATTCAATATAAGCAGTGCTGTTTTAttatacctttttttgtttatattaccatttatcatttttaatgttgaaattatTGCTGGTATTTCGTTTGTACCCCTTACCTGGATTTTAACCTGTCGagatgaacattttaataaagcgtATTCCTCTACCCTCTTTGATACCGTGATATAAAAGTGCTCTGGCTTTGTATTATTGCTGGTTTTTagttgtaattaaaaaaaccagGTAAAGAGGGAGGGTGATATTATGcgatcacatttttatttcatctttttgtttttggttgtgtacatatataaatatatattttccattttaaggGGATGATGTAAGAAAAAGACAATTATTTCTTTGTGTTCAAGGTCTTTCTCCTTTTGCTTCTTTCTTAAAGCTTTCCATCTGTCTCTCAACGGTTATGTAATACTTTGTAAAGAGAGACAAAACTTGACGTTACAAGGAACCATGTATACTTTAGTTTCTCATGTGGTTTCTTTTGCTCTTGTAATTAAAACTGTAATCAGGGTTCATTAAAACAGGTAAAAGCGGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46532 lncRNA upstream 11931 27712246 ~ 27713190 (+) True G31520
XR_006250749.1 lncRNA upstream 108263 27607787 ~ 27616858 (+) False LOC122343300
TU46558 lncRNA downstream 46101 27797973 ~ 27798209 (+) True G31540
TU46561 lncRNA downstream 71534 27823406 ~ 27823705 (+) True G31543
TU46576 lncRNA downstream 160445 27912317 ~ 27951998 (+) True G31549
TU46577 lncRNA downstream 160445 27912317 ~ 27951998 (+) False G31549
TU46595 lncRNA downstream 173575 27925447 ~ 27979133 (+) True G31557
XM_043236227.1 mRNA upstream 13715 27665105 ~ 27711406 (+) True LOC122342440
XM_043236229.1 mRNA upstream 13715 27665105 ~ 27711406 (+) False LOC122342440
XM_043236228.1 mRNA upstream 13715 27665105 ~ 27711406 (+) False LOC122342440
XM_043236230.1 mRNA upstream 13715 27665105 ~ 27711406 (+) False LOC122342440
XM_043236231.1 mRNA upstream 15928 27665105 ~ 27709193 (+) False LOC122342440
XM_043236328.1 mRNA downstream 4653 27756525 ~ 27778786 (+) False cica
XM_043236329.1 mRNA downstream 4653 27756525 ~ 27778786 (+) True cica
XM_043237690.1 mRNA downstream 27578 27779450 ~ 27792872 (+) True gsk3aa
XM_043237691.1 mRNA downstream 27578 27779450 ~ 27792872 (+) False gsk3aa
XM_043236382.1 mRNA downstream 47239 27799111 ~ 27820247 (+) True LOC122342539
TU46402 other upstream 357131 27366230 ~ 27367990 (+) False LOC122342372
TU46403 other upstream 357131 27366351 ~ 27367990 (+) False LOC122342372
TU46406 other upstream 366974 27357443 ~ 27358147 (+) False LOC122342494
unassigned_transcript_953 other upstream 501135 27223914 ~ 27223986 (+) True trnav-uac_5
unassigned_transcript_952 other upstream 583497 27141552 ~ 27141624 (+) True trnav-aac_9
TU46683 other downstream 455086 28206958 ~ 28216248 (+) True G31614
TU46688 other downstream 466861 28218733 ~ 28221417 (+) True G31619
TU46717 other downstream 533155 28285027 ~ 28320694 (+) False G31636
TU46718 other downstream 533155 28285027 ~ 28320694 (+) True G31636
TU46723 other downstream 548155 28300027 ~ 28301346 (+) False LOC122342379

Expression Profile