RNA id: XR_006250664.1


Basic Information

Item Value
RNA id XR_006250664.1
length 1564
RNA type transcript
GC content 0.45
exon number 9
gene id ube2h
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 7532912 ~ 7558489 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGACATGACGTCATCGGCGGAGGGATAGATAGCTGCGAGAGAGCAGTGAGGGCAGAGGACTACCAGCACTATCCGCTGCGGACAGAAAGTGGAGGGCGAAAACTCTCGGAACGACAGCTTGCCGTGTGCCAATGtgcaaaaatatacagtttcGGTAGAGGCCAAGGGATCGAGAATCAGCCGCAGAAGATTCGAGCTTCGGTCATCGGGAAGAGGAGTGTATAAAGATGTCGTCTCCAAGTCCGGGCAAAAGACGAATGGACACCGACGTGGTGAAACTCATCGAGAGTAAACATGAAGTCACAATCCTGAGTGGACTCAATGAATTTGTAGTGAAGTTTTATGGACCACAAGgaaCACCATATGAAGGGGGTGTATGGAAGGTGCGAGTAGATCTTCCAGACAAATACCCCTTCAAATCTCCCTCTATAGGATTTATGAATAAGATTTTTCATCCGAACATCGATGAAGCGTCAGGGACCGTGTGTTTAGATGTGATCAACCAGACATGGACCGCTCTTTATGATCTCACCAATATCTTCGAGTCGTTTTTGCCACAGTTGCTGGCCTACCCGAACCCCATCGACCCTCTGAACGGAGACGCCGCAGCCATGTACCTACACCGGCCAGAGGACTACAAACAGAAAATCAAAGAATACATCCAGAAATATGCAACAGAGGAGGCTCTGAAGGAGCAGGAGGAAGGAGCGGGCGACTCCTCTTCAGAAAGCTCCATGTCCGACTTTTCAGAGGACGAAGCTCAGGACATGGAGTTGTAGTTAAGGGTGACAGTTTCTCCCCTTTACAACAGAGACTATATTATTTCCTAACCATGCGAAGCAGACTATaaaagattcatatttaaacaagAGATGCCCATCTGGAGCAGCCCCCAGTGCTTACACACGCGCACATCCAGGGGACAGCAGTTATTAATGTTGTGGTCTCCAGCTGTTTGTTTGCCTGAGAGccagagagaggaagaagagacCTGTCTTCCGGCTGCTGCCGTGGCCTCAGAGGCTCCGCCTGCTGGCCCTCTCAGCCAATGGCATCGCGTCTCTCGAATCTGTGTTGAACTCTCCAGTGCACTTTGCATGCGTCCGGTGTAGAGTCCAGTCTAGTTCAGTCCTGGCTGTCCACTCCTTTAGTCCCTTATACCTGTGCTTCAAGAGGGTGCTCAGACATGGGGCTTATGTGGGCACAcagcatggatttttttttaatagtatctGTATCTAGTACCTAGTGTGTGATacgctgatttaaaaaaaatacaatttattttactactttttttttttttttttttttttttttttttttaatcccagGTATTATGGTAACTTGCCCCTTTTCTTTCCTTATCCATTAATCTTACACTctatttttgccatttctttttttttttcttttttctttttttcttttgcattgtgAAGTGGGCATGCCTGTCACAAAGGACAAATGCTCTTTATCTATAGGATTATAATCTCTTAAATAGCTGTGTACAGTAAACTGTAATaacttcttttttaataaaatattaaatatgtgtaCAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39831 lncRNA upstream 69547 7413936 ~ 7463373 (+) False akr1b1.1
TU39830 lncRNA upstream 69547 7462236 ~ 7463373 (+) False akr1b1.1
TU39562 lncRNA upstream 305483 7187940 ~ 7227437 (+) False G26692
TU39534 lncRNA upstream 444561 7083300 ~ 7088359 (+) True G26669
XR_006250775.1 lncRNA upstream 471878 7057424 ~ 7061042 (+) True LOC122343425
XR_006250661.1 lncRNA downstream 32072 7590561 ~ 7636680 (+) True LOC122342925
TU39923 lncRNA downstream 32134 7590623 ~ 7636572 (+) False LOC122342925
XR_006250639.1 lncRNA downstream 557399 8115888 ~ 8123874 (+) True LOC122342735
TU40014 lncRNA downstream 566770 8125259 ~ 8125994 (+) True G26994
XR_006250640.1 lncRNA downstream 570672 8129161 ~ 8132328 (+) True LOC122342736
XM_043237947.1 mRNA upstream 353 7528337 ~ 7532567 (+) True zc3hc1
XM_043237120.1 mRNA upstream 13195 7511541 ~ 7519725 (+) True cax1
XM_043237938.1 mRNA upstream 22082 7503572 ~ 7510838 (+) True smo
XM_043237936.1 mRNA upstream 22086 7503573 ~ 7510834 (+) False smo
XM_043237860.1 mRNA upstream 31889 7494956 ~ 7501031 (+) True tspan33a
XM_043236716.1 mRNA downstream 359261 7917750 ~ 8019502 (+) True exoc4
XM_043236717.1 mRNA downstream 359261 7917750 ~ 8019502 (+) False exoc4
XM_043236719.1 mRNA downstream 461422 8019911 ~ 8034929 (+) True lrguk
XM_043237529.1 mRNA downstream 482944 8041433 ~ 8096788 (+) False col7a1l
XM_043237526.1 mRNA downstream 482946 8041435 ~ 8100749 (+) False col7a1l
XR_006250876.1 other upstream 158926 7373854 ~ 7373994 (+) True LOC122343892
XR_006250877.1 other upstream 162645 7370135 ~ 7370275 (+) True LOC122343893
TU39561 other upstream 305483 7225521 ~ 7227437 (+) True G26692
TU39399 other upstream 1141993 6388837 ~ 6390927 (+) True vhll
TU39185 other upstream 1635149 5892985 ~ 5897771 (+) False LOC122342837
XR_006250729.1 other downstream 482943 8041432 ~ 8094501 (+) False col7a1l
TU40013 other downstream 579249 8137738 ~ 8138439 (+) True G26993
TU40115 other downstream 689423 8247912 ~ 8249223 (+) True G27079
XR_006250548.1 other downstream 975327 8533816 ~ 8542712 (+) False etnk1
TU40537 other downstream 1610287 9168776 ~ 9182232 (+) False G27360

Expression Profile