RNA id: XM_043237158.1


Basic Information

Item Value
RNA id XM_043237158.1
length 2710
RNA type mRNA
GC content 0.48
exon number 6
gene id znf800b
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 958334 ~ 969359 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTCCTCGGATTGAACGCGTTCTTTGGCGACTCGAACTCGCCGGCTCTCGGACGGGCTCGGATCTCGAAGCACTAGGTCACGGCACCCTGATAGATCTCCAGTGTTTGCTCAGTAGGACACGTGCGTGCGGCGGAGGCGTCACGCACCTTCCAAGAGCTCTTAAAGTCAAAGTCGAAGTAACGTTACCTTCCGGGAAGCCGCGGATCATATCGAGACGCATTCGAGGCGTTTCAGGGATGGAGGAAACCCCAGCCAATGAGAAGTCTTGTCAGACGGATGAGATCTCAGGTGAGGCCGCTGTGCCCGGGCCTGACCACGCGAGCAAGACGCTAGTCTATTCCACAGAACCTGGAGATCCTCCTCTGCTACAAACACCGCTGCTGACCTCCAAATCTGGCATCCAGCAGATCATTGAATGTTTCCGCACAGGTACTGCACAGCTGAAACACATCCTCCTCAAAGAGGTGGACACCATCTTTGAATGTAAACACTGCCGCAGTCTCTTCCGTGGCCTTCCCAATTTGATCAAACACAAGGAAATTTATTGTTTCACTCGAATGCCTGAACCTGATGGCCCTTCTGGAGATGGCAAGAAGACCGTAAAAGAACTTCTTGAGGCTATCTATCCCCGATCTGATAAAGAAGAATATATACTGAAACTGGAGCCCATTGCTGGTAACCAGAATGCTGTGTACCAGTACCTCTCCAAAGAAGATGACCTGCCACCTTCATCTCAGAGCCCAAACCACACGACCACAGACAGCTGGAGACACTACCACTCCAAGGAGAGCCAGGAGCCGTACTCGGAGGAGGCCCAGTTAGAAGAAGAGGAGAACAATTTTTCAGATGACGAAGATGAGAATGAGAACATGGAGAAAGGAGAGGACGATGCAGAAAAGGGGCATCAGGATAGTGAAGAACCTGAGGAGACATCAGAAGAAACTTGTGACAAAGACCTGGCCCCATGCAAATGCCTCATTTGCAACAGGACTTACAGAGTTCGAGGCCATCTAAGAAGACACCTACGGACTGTACACAAGATTGTATCTTCTGGCTCCAAAACCAACTCCAGTGATTCCAAGAAAATGCCCGACGGTAAAGCTCCAGACACTCCCAGCAGTAGTCCCAGCTCTTTGTCTGACAACCAGAAGAGCCCAAAAGAGGACAAGGTCTCGTCCAAGCCTCAATTCTCCATAGGCTTTGACTTTAAGACACGCTTCTGCAAGCTCTGCAGGCGCACCTTCAGCTCCGTGCAGAACCTGGAAAAACACATTGAGCTGCACACGGATAATGGCACGGACTTCTTTGTCAAGTTTTACTGCTGTCCGCTCTGCCGCTACAAGACGCGCCGCAAGAGGGATGTGTTACGCCATCTCTCAGAGTTACACAAGAAGAAATCGTCCTACCTGAGCAGGATCTCCCAGTCGCTGGAGAGCTACTCCGTCAAGAAGCCAGCTGAGGTCGTGTTGAACAAAGAAGAGGAGATAGTTCAAGGTCAACAAGAAGAAGCGGATGTCCACCTCACCCACACTTCACCGTATCTGACACGCAGGAACTTGTCTCCAAAAGCTCCTGGCATAATTGGAAAAAAGGCCAACAAAAAGAAGCTTCACAACGAGGAAGTgagccaaaacaaaaaattaaagcCTAGTAGCCCAAAAGGGAGTGCTACCAAGAAATCCCTGCACGTGTGCAACATCTGTGGGCAGAGCTTTAAAAAGACAAGATACCTAGGGTTGCACAAGAGAAGCCACCTGAAGTCTGCAATCAGGAGCGGAGGAATCAGAACGAGATCCAAGGTCATGCTTTGATGTCTCCTGACAGCGAACTGGACTTGCAGCAATTGTGGAAAGACCGTGAGAGTCACAAAGAACATCAGAGCCGCTAAACAAGCAACGATACAGTGCTGTGTTAAATGAGTTAAATCATAAGTGGGGTATAAGAAACCCTCAGAAATGTGTGTTTGGGcttttaggagcttctccatCATCCGCGCGGGAGGCCGTATGTCAGTGTAACGGTACAATGTTTTCAGCTGCGCTCTATTAACCATTTATGAGGGCTTCTGACCATTCTCAGGTATGAGAGGAAATACGTATGCTTTCCATTTCCCCGCTGCCATCAATAAGATTTGACATTTCCATCCAGAACTAAGTAGACGTTTGTTCCAGGATCTCGTTGTAGCAGGTTTAGCCTCGGGTGGAGCTTCAAGGCACACACGCTCTTGGTGAGAGGGTACTGAACGTCGACTGTTGACACCCATCAGGCTCATTGGCATTCAGTGCAGTCGTACGGAGGAAgcttcttttctgtttctctgaAAACGGTGGACACTGAAGACCACTTGAACTTGAGCTTCTACTTCAGTTATATTAAGGGGAAGGAATCTTTTATGTTTGATCTGGGGAAGATAAGCAGTTGCCCTTATATGAACTGCAGGCCGACGTTAAATGCTTTCCGTGAAAATTTTAGTTGCCTTTCTGCTGCATTAATCAGTTTTAGATGCTTCTTTCGTTATATTTCTCTCCTCATTTGTCAGTTAACATTTTACAGAAAGCTTAAAAGGCCTTCACAAGCATTCACTGCAAAtccaagtttcttttttttagccTTCCGGAGGCTTGACGGATGCAAGTTGGTAGaagttttatttcttattgttGAATTGAATGCATTGACCAACAATAAACTGAGAAAGCGACTACGtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36909 lncRNA upstream 25246 864840 ~ 933111 (+) True G24811
TU36856 lncRNA upstream 306764 649509 ~ 651593 (+) True G24768
TU36846 lncRNA upstream 333132 623251 ~ 625225 (+) True G24758
TU36839 lncRNA upstream 338661 619477 ~ 619696 (+) True G24754
TU36836 lncRNA upstream 342501 615600 ~ 615856 (+) True G24751
XR_006250559.1 lncRNA downstream 143536 1112895 ~ 1127380 (+) True LOC122342413
TU37037 lncRNA downstream 278021 1247380 ~ 1249169 (+) False LOC122342481
TU37074 lncRNA downstream 317253 1286612 ~ 1287073 (+) True G24925
TU37102 lncRNA downstream 360106 1329465 ~ 1331843 (+) True LOC122342419
TU37142 lncRNA downstream 587033 1556392 ~ 1557778 (+) True G24968
XM_043236945.1 mRNA upstream 1007 939160 ~ 957350 (+) True atxn7l1
XM_043236944.1 mRNA upstream 1007 939160 ~ 957350 (+) False atxn7l1
XM_043236948.1 mRNA upstream 20534 934046 ~ 937823 (+) True sypl1
XM_043236947.1 mRNA upstream 26679 917582 ~ 931678 (+) True nampt1
XM_043236971.1 mRNA upstream 50033 891964 ~ 908324 (+) True fgd4b
XM_043237155.1 mRNA downstream 776 970135 ~ 1111519 (+) True grm8a
XM_043237156.1 mRNA downstream 51678 1021037 ~ 1111519 (+) False grm8a
XM_043236306.1 mRNA downstream 276219 1245578 ~ 1248290 (+) True LOC122342481
XM_043237710.1 mRNA downstream 288374 1257733 ~ 1272088 (+) False waslb
XM_043237708.1 mRNA downstream 288375 1257734 ~ 1272088 (+) True waslb
TU36860 other upstream 292827 654092 ~ 665530 (+) True G24771
TU36683 other upstream 584275 373527 ~ 374082 (+) True G24632
TU36680 other upstream 584533 373527 ~ 373824 (+) False G24632
TU36656 other upstream 663288 293235 ~ 295069 (+) True G24609
TU36577 other upstream 873395 83688 ~ 84962 (+) True G24555
TU37077 other downstream 318953 1288312 ~ 1291224 (+) True ndufa5
TU37269 other downstream 701153 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 814933 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 2146149 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 2150170 3119529 ~ 3306758 (+) False erc1b

Expression Profile