RNA id: XM_043237172.1


Basic Information

Item Value
RNA id XM_043237172.1
length 4467
RNA type mRNA
GC content 0.45
exon number 23
gene id LOC122342949
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18594319 ~ 18604310 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAGGGGTCACTCTTGGTGGGTTGTGCACAGAATATAGGTGGGAACCTTCCCTCAGGTGACAGGTGTTGCTGGAGGGAAGGTGCACACAGTTTTTTGACCGCTACTCTAAGTAGTTTGTACCACGATACAAGTTGTAAGGTGATGGACAGGTGGATTTATTGACTGTTTGTTTGGATTCTTGCCATATGGAAATGAAGACCAGGAACGGGTAAAATAAATCGACAACCGTGagcattttaatatcttgtGTGGACATTCtagttaatataaatgtaagagtGTGCGTCCATTTACAAGCACCGACCAGCATCCCTCAGCAGCTTAAAGTAGTGGACTTAGCTGCTTACACTTAACATGGACAAACTAGACTCACCAACAGCAGGTTACAACTTCAGTACATGACAAGAGACAGTGGCTACAAGAAggaaaaatttgtatttaaaaaatTGCCGGCTAATTTCCTGCCGTTTGGTCAAGGAGACACAGTCAATCCTATTTCAGATGATGGAAGCTCTCAAGCCATTCAGTTGCAGCACCCTTTCAAATACTTTGGACGCACATACAATCAGATCTATGTGAACAACAATGGTCACCTGACCTTTACTCGAGCCCTGTCAGCCTACGTTCCTTATCTGAACGCTGGATTAGACATCATTGCTCCTCTGTGGACAGACCTTTACAATGTCAACGGCGGAACTATCTCCTACAGAGAGGACACAAGCAGTGCTGTACTGACACAAGTCACTCAAGCGGTTAACCAATATTTTCCTAGGGTGCCTTTTACGGCTTCGTCAGCCTTTGTGGCCACCTGGAACCAAGTGCCATACATCACTGGCGGAGGGGGTGTTACTTTCCAAGTGGTTTTAGTGTCCAATAGTGTTCGCTCTTTCATCCTTATCAACTATGGAAATATTGCGCAAACGGGTCAAGCCTGGATGGCTCGTTATGACACAGTGGACTCCATCGATTCTTTCTCAATTCCGGCAGCCAGTCCCCCACAACTCTCATCCAGCAGTAATATCAATGTGAACGGTCGCTGGTTTTTCCGTGTCGACAAATCTGCACGCTTGCCGGCTAATTTCCTGCCGTTTGGTAGTGGAGACATAGTCAATCCCATTTCGGACGATGGAAGCTCCCAAGCTATTAACTTGCAGCACCCTTTCAAATACTTTGGACGAACATATAATCAGATCTATGTGAACAACAACGGTCACCTGACCTTTACTCGAGCCCTGTCAGCTTACGTTCCTTATCTGAACGCTGGATTAGACATCATTGCTCCTCTGTGGACAGACCTTTTCAATGTCAACGGCGGAACTATCTCCTACAGAGAGGACACAAGCAGTGCTGTACTGACACAAGTCACTCAAGCGATTAACCAATATTTTCCTAGTGTGCTTTTTACGGCTACGTCAGCCTTTGTGGCCACCTGGAACCAAGTGCCATACATCACTGGCGGAGGGgatgtTACTTTCCAAGTGGTTTTAGTCTCCAATGGTGTCCGTTCTTTTGTCCTCATCAACTATGGAGATATTGCACAAACATCACAATCATGGCTGGCTCGTTATGACACAGTGGACTCTATCGATTCTTTCACAATTCCGGCAGCCAGTCCCCCAGAACTCTCATCCAGCAGTAATATCAATGTGAACGGTCGCTGGTCTTTCCATGTCGACAGATCTGCACGCTTGCCGGATAATTTTCTGCCGTTTGGTCATGGAGACACAGTCAATCCTATTTCAGACGATGGAAGCTCTCAAGCCATTAACTTGCAGCAACCTTTCAAATACTTTGGACGCACATACAATCAGATTTACGTGAACAACAACGGTCACCTGACCTTTACTCGAGCCCTGTCAGCTTTCGTTCCTTATCGGAACGCTGGATTAGACATCATTGCTCCTCTGTGGACAGACCTTTTCAATGTCAACGGCGGAACTATCTCCTACAGAGAGGACACAAGCAGTGCTGTACTGACACAAGTCACTCAAACGGTTAACCAATATTTTCCAAGGGTGCCTTTTACGGCTACATCAGCCTTTGTGGCCACCTGGGACCAAGTGCCATACATCACTGGCGGAGGGGATGTCACTTTCCAAGTGGTTTTAGTCTCCAATGGAGTTCGCTCTTTCGTCCTCATGAACTATGGAGATATTGcagaaacatcacaaacatGGCTGGCTGGTTACGACACAGTGGACTCCATCGATTCTTTCTCAATTTCGGCAGCCAGTCCCCCAGAACTCTCATCCAGCAGTAATATCAATGTGAACGGTCGCTGGTCATTCCGCGTCGACAGATCCGCACGCTTGCCGGCTAATTTCCTGCCGTTTGGTCATGGAGACATAGTCAATCCCATTTCAGACGATGGAAGCTCTCAAGCCATTGACTTGCAGCACCCTTTCAAATACTTTGGACGCACATACAATCAGATCTATgtgAACAACAACGGTCACCTGACCTTTACTCGAGCCCTGTCAGCCTACATTCCTTATCTGAACGCTGGATTAGACATCATTGCTCCTCTGTGGACAGACCTTTACAATGTCAACGGCGGAACTATCTCCTACAGAGAGGACACAAGCAGTGCTGTACTGACACAAGTCACTCAAGCGGTTAACCAAAATTATCCTAACATGCGTTTTACTGCTACATCAGCCTTTGTGGCCACCTGGGACAGTGTGCCGTATTTCAGCCACGAAGGGGAGGTTACTTTCCAAGTAGTTTTAGTCTTCAGTGGTCGCCTCTCTTTCATCCTCTTCAACTATGTCGACATTGCGCAAACGGGTCAAATTTGGAAGGCTGGTTATGACACAGTGGACTCTGATAATTCTTTCAGAATTCCAGCAGCCAGTCCCCCAGAACTTTCCTCCAGCAGTAATATCAATGTGAACGGTCGCTGGCTGTTACATGTTGATGGTTCGGAATACTtttgtgGTTCTTGCACAGCAAATGAGGCATGTCAGGAAAGAAGTGGTGTCTATGGCTGTACTTgcttaaatgaacaaacatcAAATCCTGAACAGTTTGATGCCGTGGAGTCCTGTGCCAGCAGCACTGGCACCATGTCTCTATCTCGCTGTCAGCTCTTCGACTCTGGTTTTATTCCTGAGAACCTTCACCTAAATAACCCGAGCTGTAAAGGCACCATTGACAATGGAAGACTTCTGTTTAATTTCGACAATGAAGACCACATATGCGGCACCACTCTGACAAACAACAGGACTCACTTCATCTACCAAAATGCCATTCAGTCTAATTTGAGAAACCATGATCACAGCATCATTTCAAGAGAAAGATGGATGAATATCACATTTTCTTGTGCATACCCTCTGATCCAGACCCTATCTATGCCCATGGGTATCATAGCTGAGAGCAGTGTCATAAGTCAGGAGATTCCTGGCCAGGGCACATACCAGATCCGCATGATTCCCTACCACGATGCAGAGTTTACTAGCCCATACGAAGGGGAAGTGGAAATACAAGTGAACCAGCAGATTTATGTGGCTGTTGAGGTGGAGGGAGTGGATCCAAATCAAATCGCGACAGTTCTTGACAACTGCTGGGCAACTCCTGTTAACGATGCCAACAACGATATTCGTTGGAGCCTAATCATTAGAGAATGCCCCAACCCTGATGATGGCACGGTGGAGGTTCTTCAGAATGGTAATGGTATAGCAAGCCATTTCTCCTTCAGGATGTTCACCTTCTCAGGAAGCTCTGACCGCATTTTCCTGCACTGTCAGATCCACCTCTGCCTTGTAATGAATGGCAGATGTGCACAGTCCTGTGAGGTTGGAAATAGACGTAGAAGACGCAGATCTTTGGACTTCCAACACTCTGCGGCGATCACCATGGGTCTTTAAAAAAGTTCTGCAGCTCTGATGAGGGAAAGATCCTACTTTtctgttaaaatactttttgtgaatgttaaaacaaatgtgAATGTTTTGAAAGCACCTCCTTGTCTTTAAAGATCTACATGTGAAACcatgataatttaataaaacatcacgCATTAAAGAGAACTTTGGGAAAAACTACTAAATCTAACCAAGGCACTACAAAGTAAAATAGAATTATCAGTAAAATTCTGTTGTTTCAGTGTGATAGAGGAAgtgttttcaaaacattacataCGAGACTAAATTCTTCTGCGTTCTAGGATCGATAAGATAAGATCAATATGATAAGATAAATACCTAAACTGtccctctttctctttgttcaAGGAGTTATATTGGAAAATAATATAGCAGATGATCTTTGAATAAATCTGCatagcaatgaaaaaaatactttgtgaTCTTTTTTGGTGCTTGCTTGGTTTTTCTGAGGGACAAAGCATAGTGTAGCAAGACAAAGTACAACATTACAAGAGTACAAGAACCTTGTTCTAGTTCTCCAAAACTACAATTAGCCTAACCATGGTTGCAAGTCCTGCCATTAAcagcatatttcagtttt

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43989 lncRNA downstream 29874 18563154 ~ 18564445 (-) True G29682
TU43983 lncRNA downstream 35038 18556624 ~ 18559281 (-) True G29680
TU43984 lncRNA downstream 36051 18556500 ~ 18558268 (-) False G29680
TU44075 lncRNA upstream 107438 18711748 ~ 18712103 (-) True G29720
XR_006250719.1 lncRNA upstream 133505 18737815 ~ 18740781 (-) True LOC122343197
TU44083 lncRNA upstream 140291 18744601 ~ 18747308 (-) True G29726
TU44096 lncRNA upstream 179295 18783605 ~ 18783915 (-) True G29736
TU44098 lncRNA upstream 181886 18786196 ~ 18786692 (-) True G29738
XM_043237347.1 mRNA downstream 2932 18587664 ~ 18591387 (-) False LOC122343043
XM_043237348.1 mRNA downstream 3123 18587663 ~ 18591196 (-) True LOC122343043
XM_043237345.1 mRNA downstream 10877 18579651 ~ 18583442 (-) False LOC122343042
XM_043237346.1 mRNA downstream 11368 18579651 ~ 18582951 (-) True LOC122343042
XM_043236043.1 mRNA downstream 15316 18571705 ~ 18579003 (-) True LOC122342233
XM_043237360.1 mRNA upstream 50934 18655244 ~ 18661650 (-) False LOC122343054
XM_043237422.1 mRNA upstream 58548 18662858 ~ 18668809 (-) True scgn
XM_043237165.1 mRNA upstream 88692 18693002 ~ 18735598 (-) False LOC122342944
XM_043237162.1 mRNA upstream 88692 18693002 ~ 18735597 (-) False LOC122342944
XM_043237164.1 mRNA upstream 88692 18693002 ~ 18735597 (-) False LOC122342944
TU43941 other downstream 165976 18408560 ~ 18428343 (-) True G29653
TU43653 other downstream 614397 17970605 ~ 17979922 (-) True G29473
TU43577 other downstream 858045 17735350 ~ 17736274 (-) True G29417
TU43541 other downstream 955610 17637159 ~ 17638709 (-) False srd5a3
TU43209 other downstream 1472190 17118628 ~ 17122129 (-) True xrcc3
XR_006250671.1 other upstream 52670 18656980 ~ 18661653 (-) True LOC122343054
XR_006250670.1 other upstream 52670 18656980 ~ 18661649 (-) False LOC122343054
TU44045 other upstream 120515 18724825 ~ 18735640 (-) False LOC122342944
TU44133 other upstream 296255 18900565 ~ 18902548 (-) False LOC122343082
XR_006250672.1 other upstream 312016 18916326 ~ 18917533 (-) True LOC122343130

Expression Profile