RNA id: XM_043237175.1


Basic Information

Item Value
RNA id XM_043237175.1
length 4062
RNA type mRNA
GC content 0.40
exon number 10
gene id LOC122342952
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20568379 ~ 21492901 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAGTGAAAGCAGATTATGTTTTTCATGTGACTTTTACACTTGATCTTgagatttttttctccatttaatctttttttatttgctcatatgGGAAGATACATGAACataaagagaaagcaaagacaTTTTCAGAAGTTGTCTAGAAACTGAACGTTTTGATCAAAGCAAGTCTTCagctgtggagcagaaagacacttccatattcatTCGTGAGTTGGTGAAGGACGATGGCGTCTGTTGAAAAGCTGCTCGTGGACTCACTGAAGGATCTGGTAGAAGCTGAACTGAAGGAGTTTCAGTGGAACTTAGTGAATTTACGTCTTGAGCATCTTTCAAGGTCTGAATTGGAAAAGGCAGATAGATTCGACACAGTGGACAAAATGGTCAAATGTTTTGGACCAGACAAAGCTGTGAAGGTCATGATAGACATCCTGAGACAGATGAGCCAGAATGATCTGGCTGAATGGTTGGAGAATGAACACAAACGAGCTAAGACTGAGGGCGATATGAAGACATCTGTAGGTAATTCACAACATATCTCAAagctgacaaacttttttaaaactcacAAAGCAAACATGAAGAAGAAcgttgaatatatttttgagggCAACATagaaaatgaagcaaaactTAAGGCTGTTTACACAGAACTGTTCATCACAGAGGGAGATATGAAAGATGTCAATCATGAACATGAGATTCTGAAGATTGATGCTGctttcaagaacaaaaaaacacaggacaAACCGATCagatataatgatatatttatcgAACTGATgaaaaacagtgagaaaaaaattgttctcaCTAAGGGCatcgctggcattggaaaaactgtctctgtgcacaagttcatcctggactgggcaGAAGGAGAATCCAATCAAGATATACACTGTGTGTTCCTgcttccattcagagagatTAACTTAATGACAAATGAAGATTTCAGTCTCCATGAGCTTCTGCTGGAATTTTACCCTGAACTGAAAGACCAGGAGAAATCCAAACTATATAAGGAATGTAGGctagcatttatatttgatggacttgatgagAGTCGTCTGACtctaaattttaaaagtagatcACTGAACACTGTTGAGAAAAAAGCATCTGTGGATGTGCTCTTTACAAGTCTGGTCAAAGGAACTCTGCTTCCATCAGCTCTTGTCTGGGTGACATcacgaccagcagcagccaatcagatccctccTCAGTATGTGGGTTTGTTCACAGAGGTGCGAGGATTCACTGACCAGCAGAAGGAGGAGTACTTTAAAAAGAGATTCACAGATGAGAGTTTGTcctccagaatcatctcacacattaagATGTCTCGTAgtctctacatcatgtgccacgTTCCAgtgttctgctggatcacagCCACAGTACTTCAGGATATTCTCACTGAGAACAATGAAGAGAACTTCAACACAACactcactgaaatgtacattcactttCTGCTTATACAGATGGACATGAAGAACCAGAAATATGATGAACAAGAAGAAAGAGAATGTTCTGTGcacttacaattaaataaagagattattttaaagttagCCAAGTTAGCGTTTGAACAACTGAAGaaggaaaacattgtgttctatAAGGAAGACttaaaagaatgtaatattgATACGAGTAAAGACACTGAGTTCACAGGAATGATCGCTGAGATCTTCAAAAGGGAACACAGACTTCATAAAGCAAAGGTCTTCTGCTTTGTGCATCTGAGTGTTCAAGAGTTTCTtgctgcagtgcatgtgttCATCTGTTACCTGAACAAGAACATGCAGGagcttcagtttttctttgatgagccaaaagaaaatgtcacattGGAGGAGTTACTGCAGAAGGCCATTGATAAAGCCATGAAGAGTCAGAGAGGACATCTGGATCTGTTCCTGCGGTTTCTGATGGGCATTTCTCTAGAATCCAGTCAAAACCTGCTAAAAGGCCTGATCACACACCCTGAAGACACTACAGAGTGCATCAAAAAAGTAACTGAATGTattaaacaagaacaaaacatgTACAATATCTCAGATGAAGCTCtagtcaacttattctactgcTTACTTGAGCTGAAGGATAATTCATTATATGAGGAAATCCAGAGTTACCTCAGTTCAGATGAACATCCAGGAAGAGATCTCTCATCTTCAATGTGCACAGTGCTGACCTACATACTGCTGATATCAGAGAAGGTGCTGGATGAGTTCAACCCAAAGAGGTTCACATCATCTTCTTTCAACTACACAAGACTCATACCAGCtgtgagatgctgcagaaaagctcaCAGATTTGACGGCTgtggttttgatgaaacatgctgtgaaaCTGTGTCTTCTGCTCTACAATCATCAAATTCTCATCTGAAAGAGCTAGACCTGAGCAGCAatcacctgcaggattcaggagtgcaGCTAATTTATGATGGACTGATGAGTTCACACTGTCGACTGAACATACTAAGGTTGTGTGGCTGTAATCTCACTTCTCAGTCCTGTGAAAGTTTGTCATTAGCTCTACAATCATCAAACAAtatcctgagagagctggacctgagatacaatgacctgcaggattcaggagggATGATTCTTTCCGAAGGACCTAAGAATCCAAACTCTAAGCTGGAGATATTGagATTGTCCATCTGTAATCTCACTGCTCAGTCTTGTGGGAGTTTATCATCAGTTTTACAAtcatcaaactctgtcctgaaagaactggacctgagtaacaatgacctgcaggattcaggagtgaagctgctttctgaaggactgaagagtccaaactctaAGCTGGCGATACTGAGGTTGTCTGGTtgtatggtgacagaggaaggctgtaattatttgtcttcagctctgagttttaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaggctgctctctgaaaaactggaggatccaaactgTTCACTGAATACACTCAATATTGATCATGGAGGGGAATCAAGGATTACAGAAGGACTCAAGAAATatGCATGTTTTCtgacactggatccaaacacagcataCAGTGATCTCcttctgtctgaggagaacagaaaggTGACTCATGTGAAAGAGAAACAGctgtatcctgatcatccagagagATTCTATGAGTTTcctcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagactgagtggagTGGAGATGTGTGTATATCAGTGTCACATAAGAACATCAGGAGGAAGAAAGACGGTGACAAGTGTTTGTTTGGAcgtgatcagtcctggagtttgtaCTGCTCTCCTTTCAGATACTTATTCAGACACAATAACACAAAGACTAATCTCTCTGCGAAGCCCATCATCAGCAGAAGAAGAGCAGGAGTGTATAATATctacagagtaggagtgtatgtggatgagagcgcaggaactctgtccttcttcagcgtcTCCAGAAACacaatgagactcatccacacagtccagaccacattcactcagacactctATCCTGGTTTTAGAGTTTGGTCtggatcatcagtgaaactgtgttgataAATCAGAAAAGACAGATTCTTCCCATAATGCTTTGAGGTTcatgataaatcagtaacagtGACACATAAGTATCAGTTATTAGTCTCTTCCTGATATTGCCGCAGCTCAACTTTGGTCACTGAACTAACagaatacatttgttttattgtagtgTTATGTTAATCATTTGTATTATCAAAATTGTATTACTTAGTGCAGAAATAATGAATCATCAAATCAACTTGAGATCAGATATCAATTGATGTATCAAAAAATAATTGATTCCTCTCAAGACTGAGAtgagctaaaaatattttaaatatgacattaaacagcatttaagaaaatactgtatattgtaaCGACAGTAAAGCTGCATTAAAAGAGTATATTTCAATGAGTGTGAGAAGCTGTCAGAAGAtactttaagtgttttattcacAGATGTCATGAACTGCTGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44823 lncRNA downstream 53264 20514817 ~ 20515117 (-) True G30258
TU44819 lncRNA downstream 99585 20468506 ~ 20468796 (-) True G30254
TU44793 lncRNA downstream 122057 20327906 ~ 20446324 (-) True G30240
TU45029 lncRNA upstream 6737 21499638 ~ 21499998 (-) True G30408
XR_006250701.1 lncRNA upstream 175909 21668810 ~ 21673424 (-) False LOC122343179
XR_006250700.1 lncRNA upstream 175909 21668810 ~ 21673424 (-) True LOC122343179
TU45062 lncRNA upstream 180822 21673723 ~ 21676131 (-) True G30425
TU45059 lncRNA upstream 183975 21676876 ~ 21809618 (-) True G30423
XM_043237449.1 mRNA downstream 235100 20330447 ~ 20333281 (-) True LOC122343112
XM_043237276.1 mRNA downstream 298475 20266961 ~ 20269906 (-) True LOC122343007
XM_043237375.1 mRNA downstream 301532 20263660 ~ 20266849 (-) False LOC122343064
XM_043237374.1 mRNA downstream 301532 20263660 ~ 20266849 (-) True LOC122343064
XM_043236066.1 mRNA downstream 316496 20241615 ~ 20251885 (-) True LOC122342268
XM_043237212.1 mRNA upstream 24572 21517473 ~ 21528946 (-) True LOC122342973
XM_043237341.1 mRNA upstream 44421 21537322 ~ 21542289 (-) True LOC122343039
XM_043236094.1 mRNA upstream 136579 21629480 ~ 21630158 (-) True LOC122342299
XM_043237426.1 mRNA upstream 158463 21651364 ~ 21653997 (-) False LOC122343099
XM_043237425.1 mRNA upstream 158463 21651364 ~ 21653926 (-) True LOC122343099
TU44338 other downstream 285981 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 329827 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 352142 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 354049 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 355059 20213241 ~ 20213322 (-) True trnal-cag_25
TU45011 other upstream 136716 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 244190 21737091 ~ 21740330 (-) True G30372
TU45110 other upstream 635553 22128454 ~ 22245160 (-) True G30450
TU45123 other upstream 723134 22216035 ~ 22216470 (-) True G30457
TU45768 other upstream 1942079 23434980 ~ 23437015 (-) False LOC122342328

Expression Profile