RNA id: XM_043237176.1


Basic Information

Item Value
RNA id XM_043237176.1
length 3920
RNA type mRNA
GC content 0.40
exon number 10
gene id LOC122342952
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20568379 ~ 21492901 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTTGACTTGTTCTGCACAGCACTACAGTTCAGAGGACGGAGAAGAAAGATCTACATACATTACAATCGTGAGTTGGTGAAGGACGATGGCGTCTGTTGAAAAGCTGCTCGTGGACTCACTGAAGGATCTGGTAGAAGCTGAACTGAAGGAGTTTCAGTGGAACTTAGTGAATTTACGTCTTGAGCATCTTTCAAGGTCTGAATTGGAAAAGGCAGATAGATTCGACACAGTGGACAAAATGGTCAAATGTTTTGGACCAGACAAAGCTGTGAAGGTCATGATAGACATCCTGAGACAGATGAGCCAGAATGATCTGGCTGAATGGTTGGAGAATGAACACAAACGAGCTAAGACTGAGGGCGATATGAAGACATCTGTAGGTAATTCACAACATATCTCAAagctgacaaacttttttaaaactcacAAAGCAAACATGAAGAAGAAcgttgaatatatttttgagggCAACATagaaaatgaagcaaaactTAAGGCTGTTTACACAGAACTGTTCATCACAGAGGGAGATATGAAAGATGTCAATCATGAACATGAGATTCTGAAGATTGATGCTGctttcaagaacaaaaaaacacaggacaAACCGATCagatataatgatatatttatcgAACTGATgaaaaacagtgagaaaaaaattgttctcaCTAAGGGCatcgctggcattggaaaaactgtctctgtgcacaagttcatcctggactgggcaGAAGGAGAATCCAATCAAGATATACACTGTGTGTTCCTgcttccattcagagagatTAACTTAATGACAAATGAAGATTTCAGTCTCCATGAGCTTCTGCTGGAATTTTACCCTGAACTGAAAGACCAGGAGAAATCCAAACTATATAAGGAATGTAGGctagcatttatatttgatggacttgatgagAGTCGTCTGACtctaaattttaaaagtagatcACTGAACACTGTTGAGAAAAAAGCATCTGTGGATGTGCTCTTTACAAGTCTGGTCAAAGGAACTCTGCTTCCATCAGCTCTTGTCTGGGTGACATcacgaccagcagcagccaatcagatccctccTCAGTATGTGGGTTTGTTCACAGAGGTGCGAGGATTCACTGACCAGCAGAAGGAGGAGTACTTTAAAAAGAGATTCACAGATGAGAGTTTGTcctccagaatcatctcacacattaagATGTCTCGTAgtctctacatcatgtgccacgTTCCAgtgttctgctggatcacagCCACAGTACTTCAGGATATTCTCACTGAGAACAATGAAGAGAACTTCAACACAACactcactgaaatgtacattcactttCTGCTTATACAGATGGACATGAAGAACCAGAAATATGATGAACAAGAAGAAAGAGAATGTTCTGTGcacttacaattaaataaagagattattttaaagttagCCAAGTTAGCGTTTGAACAACTGAAGaaggaaaacattgtgttctatAAGGAAGACttaaaagaatgtaatattgATACGAGTAAAGACACTGAGTTCACAGGAATGATCGCTGAGATCTTCAAAAGGGAACACAGACTTCATAAAGCAAAGGTCTTCTGCTTTGTGCATCTGAGTGTTCAAGAGTTTCTtgctgcagtgcatgtgttCATCTGTTACCTGAACAAGAACATGCAGGagcttcagtttttctttgatgagccaaaagaaaatgtcacattGGAGGAGTTACTGCAGAAGGCCATTGATAAAGCCATGAAGAGTCAGAGAGGACATCTGGATCTGTTCCTGCGGTTTCTGATGGGCATTTCTCTAGAATCCAGTCAAAACCTGCTAAAAGGCCTGATCACACACCCTGAAGACACTACAGAGTGCATCAAAAAAGTAACTGAATGTattaaacaagaacaaaacatgTACAATATCTCAGATGAAGCTCtagtcaacttattctactgcTTACTTGAGCTGAAGGATAATTCATTATATGAGGAAATCCAGAGTTACCTCAGTTCAGATGAACATCCAGGAAGAGATCTCTCATCTTCAATGTGCACAGTGCTGACCTACATACTGCTGATATCAGAGAAGGTGCTGGATGAGTTCAACCCAAAGAGGTTCACATCATCTTCTTTCAACTACACAAGACTCATACCAGCtgtgagatgctgcagaaaagctcaCAGATTTGACGGCTgtggttttgatgaaacatgctgtgaaaCTGTGTCTTCTGCTCTACAATCATCAAATTCTCATCTGAAAGAGCTAGACCTGAGCAGCAatcacctgcaggattcaggagtgcaGCTAATTTATGATGGACTGATGAGTTCACACTGTCGACTGAACATACTAAGGTTGTGTGGCTGTAATCTCACTTCTCAGTCCTGTGAAAGTTTGTCATTAGCTCTACAATCATCAAACAAtatcctgagagagctggacctgagatacaatgacctgcaggattcaggagggATGATTCTTTCCGAAGGACCTAAGAATCCAAACTCTAAGCTGGAGATATTGagATTGTCCATCTGTAATCTCACTGCTCAGTCTTGTGGGAGTTTATCATCAGTTTTACAAtcatcaaactctgtcctgaaagaactggacctgagtaacaatgacctgcaggattcaggagtgaagctgctttctgaaggactgaagagtccaaactctaAGCTGGCGATACTGAGGTTGTCTGGTtgtatggtgacagaggaaggctgtaattatttgtcttcagctctgagttttaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaggctgctctctgaaaaactggaggatccaaactgTTCACTGAATACACTCAATATTGATCATGGAGGGGAATCAAGGATTACAGAAGGACTCAAGAAATatGCATGTTTTCtgacactggatccaaacacagcataCAGTGATCTCcttctgtctgaggagaacagaaaggTGACTCATGTGAAAGAGAAACAGctgtatcctgatcatccagagagATTCTATGAGTTTcctcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagactgagtggagTGGAGATGTGTGTATATCAGTGTCACATAAGAACATCAGGAGGAAGAAAGACGGTGACAAGTGTTTGTTTGGAcgtgatcagtcctggagtttgtaCTGCTCTCCTTTCAGATACTTATTCAGACACAATAACACAAAGACTAATCTCTCTGCGAAGCCCATCATCAGCAGAAGAAGAGCAGGAGTGTATAATATctacagagtaggagtgtatgtggatgagagcgcaggaactctgtccttcttcagcgtcTCCAGAAACacaatgagactcatccacacagtccagaccacattcactcagacactctATCCTGGTTTTAGAGTTTGGTCtggatcatcagtgaaactgtgttgataAATCAGAAAAGACAGATTCTTCCCATAATGCTTTGAGGTTcatgataaatcagtaacagtGACACATAAGTATCAGTTATTAGTCTCTTCCTGATATTGCCGCAGCTCAACTTTGGTCACTGAACTAACagaatacatttgttttattgtagtgTTATGTTAATCATTTGTATTATCAAAATTGTATTACTTAGTGCAGAAATAATGAATCATCAAATCAACTTGAGATCAGATATCAATTGATGTATCAAAAAATAATTGATTCCTCTCAAGACTGAGAtgagctaaaaatattttaaatatgacattaaacagcatttaagaaaatactgtatattgtaaCGACAGTAAAGCTGCATTAAAAGAGTATATTTCAATGAGTGTGAGAAGCTGTCAGAAGAtactttaagtgttttattcacAGATGTCATGAACTGCTGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44823 lncRNA downstream 53264 20514817 ~ 20515117 (-) True G30258
TU44819 lncRNA downstream 99585 20468506 ~ 20468796 (-) True G30254
TU44793 lncRNA downstream 122057 20327906 ~ 20446324 (-) True G30240
TU44827 lncRNA upstream 12811 20593319 ~ 20598701 (-) True G30262
TU44835 lncRNA upstream 51727 20632235 ~ 20632507 (-) True G30270
TU44837 lncRNA upstream 64456 20644964 ~ 20645535 (-) True G30272
TU44838 lncRNA upstream 69598 20650106 ~ 20650832 (-) True G30273
TU44858 lncRNA upstream 95752 20676260 ~ 20677864 (-) True G30286
XM_043237449.1 mRNA downstream 235100 20330447 ~ 20333281 (-) True LOC122343112
XM_043237276.1 mRNA downstream 298475 20266961 ~ 20269906 (-) True LOC122343007
XM_043237375.1 mRNA downstream 301532 20263660 ~ 20266849 (-) False LOC122343064
XM_043237374.1 mRNA downstream 301532 20263660 ~ 20266849 (-) True LOC122343064
XM_043236066.1 mRNA downstream 316496 20241615 ~ 20251885 (-) True LOC122342268
XM_043237210.1 mRNA upstream 10607 20591115 ~ 20615223 (-) True LOC122342969
XM_043237181.1 mRNA upstream 99582 20680090 ~ 20690873 (-) True LOC122342955
XM_043237187.1 mRNA upstream 112454 20692962 ~ 20716250 (-) False LOC122342956
XM_043237185.1 mRNA upstream 112455 20692963 ~ 20716250 (-) False LOC122342956
XM_043237188.1 mRNA upstream 112455 20692963 ~ 20716232 (-) False LOC122342956
TU44338 other downstream 285981 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 329827 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 352142 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 354049 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 355059 20213241 ~ 20213322 (-) True trnal-cag_25
TU44972 other upstream 747208 21327716 ~ 21330093 (-) True LOC122343135
TU45006 other upstream 802961 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 802961 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 1049109 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 1156583 21737091 ~ 21740330 (-) True G30372

Expression Profile