RNA id: XM_043237180.1


Basic Information

Item Value
RNA id XM_043237180.1
length 3997
RNA type mRNA
GC content 0.41
exon number 14
gene id LOC122342954
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20764794 ~ 20782505 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACCTCTAAGAAGATGGAATGAAACAAGTTTTAACTTGTTTTACAAAAGTGGAATACATTTCAGATCTTCCTGttcctgattcagacgagaAAACACAATGAGTGACGGAAGATGTCGGAGCAGGATGTGGAGACAATGGATGAGAgtcaaaacagaaacacattttacagctgctgctgctgctgttacCAAGGACTGAAGTTGAGAACAACTGatgaaaataaatgcttagaGGCAGCAGAAAAACAAGCTCCAGTCCAGATAAGAAATGCCCCGACTACAGTCAGTGTTGATATTAATGCTGAAACAGGTGCAAAAGTAAAGGCTGCTTTACTGACCGCAAACACCTTCACAGGACCAGTAAACATTTATGGCTCAAATGCTGAAGGAAACGATCAACAGAAATCTTCAGAGATGGaatacagagaaaaacaagaaatTTTAAGGCTGGAAAAATTCTTGGaaactcacaaaaacaaaatgaaacacaaagcGGAACATATTTTTGAgtgcaagaaagaaaatgatgtaCATCTCAAGGCTGTTTACACAGAACTGTTCATCACAGAGGGAGATATGAAAGAAGTTAATAAAGAACATGAAATTCAGCAGATTGATGATGCTCTAAAGACCCAGAAAGTACAAGACCAACCCATAAACTgcaatgatatatttacattattaaggAGAAACAATGTGAAAAAGATTGTGCTCACTAAAGGCatcgctggcattggaaaaactgtctctgttcataagttcatcctggactgggcaGAAGGACACGCCAATCACGATATAGACTGTGTGTTCCTGCTTCCATTCAGAGATATTAACAGCATTAAAGACAGAAAGGTCAATCTTCACGAATTCCTTCAGGTATTTTATAAAGAACTGAAGGACCTGGAGAAATCAAAGTTGTATACAGAATTTAAACTTGCGTTTATAtttgatggacttgatgagAGCCGACTGCCTTTGAATTTTGAAAGTGATACATTGGACAGTCTTGAAGAAAGAGTATCTGTAGATGTCCTGTTTACAAATCTAGTAAAAGGGAGTCTGCTTCCATCAGCTCTTGTCTGGGTGACATCACGACCTGCTGCGGCCAATCAGATCCATCCTCAGTATGTAGGTTTGTTCACAGAGGTGCGAGGATTCACTGACCAGCAGAAGGAGGAGTACTTCTGAAAGAAAATCTCAGATGAGACTGAGGTTTCCAGAATCAtttcacatattaaaatgtctcGGAGCCTCTATATCATGTGCCATAttcctgtgttctgctggatcacagTCACAGTACTGAAGAATATTCTCCTCAAGGACAAAGCCGAGAGCATCAGCACAACactcactgaaatgtacattcacttctTGTTgatgcaaataaacatgaagagtcagaaatatgataaaaaagcagaaagagaacgcacaaagctcttggatttaaatggtgaaatgattttaaagttaGCCAAGCTAGCATTTGAACAGTTGAAGaaggaaaacattgtgttctatGAGGAAGATCTGGAAGAATGTGGAATTGATGTTAGTGAAGGGTCAGCAGAGTTCACGGGAATGATTGCTGAGATCTTTAAAATGGAAGATGGACTTCATGAGACAAAGGTTTTCTGCTTTGTCCATCTGAGTGTTCAAGAGTTTCTTGCTGCACTGCATGTGTTCATCTGCTACCTCAACAAGAACATGCAGGacctgtttttctttaagaaaCCTGAAACAAATGTCACATTGCAGAAGCTATTACAGATGGCTGTTGACAAAGCGATGCAGAGTAAGAGAGGACATCTGGACTTGTTCCTGAGGTTTTTGATGGGCATTTCACTGAAATCTAGTCAATATCTTCTCAAAGGcctgctcacacacactgaagacaCCACAGAAAGCAACAGAGAAAcagttaaatacattaaacaagtACAAAACAGAAATATCACAGATGAAACTTTAGTCAACCTATTTTACTGCTTACTTGAGCTCAAGGACAATTCATTATATGAAGAAATCCAGAGTTACCTCAGTTCAGATGAACATCCAGAAAGAGATCTCTCATCTTCAATGTGCACAGTGCTGACCTACATACTGTTGACTTCAGAGAAGGTGCTGGATGAGTTCAATCCAAAGATATTCACATCATCTTTTAACTACAAAAGACTCATTCCAGCtgtgagatgctgcagaaaAGCCATATTTGACGGCTgtggttttgatgaaacatgctgtgaaaCTCTGTCTTCTGCTCTACAATCATCAAACCATCTGACAGAACTGAACCTGAGCAGCAatcacctgcaggattcaggagtgaagctgctttctgatggactgaagagttcaCACTGTCGACTGAACATACTGAGGTTGTGTGGGTGTTATCTCACTGCTCAATCCTGTAAAAGTTTATCTTTAGCTTTACAGTCCTCAAACTCTATGCTgaaagagctggacctgagtaacaatgacctgcaagATTCGGGAGTGAAGCTTCTTTCCGATGGACTGAAGAATCCAAACTGTCAACTGGAGATATTGAGattGTCTATATGTAATCTCACTGCTCCGTCTTGTGAgagtttattgtcatttttacaatCCTCAACCTCTGTGCTGAAAGAGCTGGACCtaagtaacaatgacctgcaggattcaggagtgaagcttcttTCCAAAGGACtcaagagtccaaactgtcagtTAGACATGCTGAGgttgtctggctgtatggtAACAGAGGAAGGCTGTCAttatgtgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcacccaggagattcaggagtcaagcttctctctgaaaaactgaatGACCCAGTCTACATCCTGAATAAACTCAAtaTGGAATATGGAGAAGAATCAAGGATTACACCAGGACCTCAAAAATatgcctgttttttcacactggatccaaacacagcacacactcaactcattctgtctgaggagaacagaaagTTGACAATTGTGAAAGACAAGCagtcgtatcctgatcatccagacagatttgattatTATGAGCAGGTGATGTGTCGAGAGAGAGTGTgcggacgctgttactgggagactgagtggagCGGAAAATATGGTGTGcgtatatcagtgtcatataaaaGCATCAGCAGGAAAGGTACGGGTGATGAATGTGCTTTTGGAcgtaatgatcagtcctggagtttgtaCTGCTCTTCTTCCAGTTACTCATTCAAACACAATAACATAGAGATTGATCTCCCTGTGAAGCCCATCAGCAGCTGTTGTAGaataggagtgtatgtggatgagagcgcaggaactctgtccttcttcagggtctctgacacaatgagactcatccacacagtccagaccacattcactcagacccTCTATCCTGGGATTGGGGTTTATTTTGCtggatcatcagtgaaactgtgttgatgaataAGAATAAATTGACAAGAGATTCTACCCCTAatgctttgagctgcatgatgaattagaaacagtgaaatattatcCTTCAGGAAAGTAATACTGCAGCTCAACTTCTGTCACTGAAATAGTGTGTAATAAATCCTCATATAGACAGTAAAATCTGTTTGATCAaaatcagtgtgtttgtgtgtcttacTCTGTTCTTCAGCATATGGGTGTTCATGATGGGTGTTACATTGGTTGCATTCAACCTGTTGCAACCTGTGTTTGATATAGTGGCCctgcaaaaaattaaatggagtAAAGTTAGGTCTGGTCCACTGGTTAAATGAAGTAAGAAGTCTTAGACAAAATTGTAGGCGGGCAGAAAGAACATGGAAAAGAAGCTTAAAATTGATTAGTGTCGTGAATCgagcctctgtggctctctctgatGGCCACTGGACAGAGCCCTCTCCCTGAACTACAGTTCCCATCATGCATTGGCCTCGAGACTGATAACCTGCCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44867 lncRNA downstream 27634 20736146 ~ 20737160 (-) True G30293
TU44858 lncRNA downstream 86930 20676260 ~ 20677864 (-) True G30286
TU44838 lncRNA downstream 113962 20650106 ~ 20650832 (-) True G30273
TU44837 lncRNA downstream 119259 20644964 ~ 20645535 (-) True G30272
TU44835 lncRNA downstream 132287 20632235 ~ 20632507 (-) True G30270
TU44880 lncRNA upstream 76479 20858984 ~ 20861471 (-) False LOC122343123
TU44899 lncRNA upstream 189771 20972276 ~ 20974065 (-) True G30317
TU44912 lncRNA upstream 270473 21052978 ~ 21053654 (-) False LOC122343098
TU44875 lncRNA upstream 283409 21065914 ~ 21068188 (-) True G30301
TU44930 lncRNA upstream 335310 21117815 ~ 21126071 (-) True G30343
XM_043237505.1 mRNA downstream 6135 20733274 ~ 20758659 (-) True LOC122343149
XM_043237288.1 mRNA downstream 31710 20717982 ~ 20733084 (-) True LOC122343016
XM_043237287.1 mRNA downstream 31713 20717982 ~ 20733081 (-) False LOC122343016
XM_043237187.1 mRNA downstream 48544 20692962 ~ 20716250 (-) False LOC122342956
XM_043237185.1 mRNA downstream 48544 20692963 ~ 20716250 (-) False LOC122342956
XM_043236076.1 mRNA upstream 22089 20804594 ~ 20814021 (-) True LOC122342278
XM_043236077.1 mRNA upstream 65016 20847521 ~ 20850533 (-) True LOC122342279
XM_043237476.1 mRNA upstream 75918 20858423 ~ 20864406 (-) True LOC122343123
XM_043237263.1 mRNA upstream 83056 20865561 ~ 20871694 (-) True LOC122342999
XM_043237499.1 mRNA upstream 106421 20888926 ~ 20891675 (-) True LOC122343141
TU44338 other downstream 482394 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 526240 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 548555 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 550462 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 551472 20213241 ~ 20213322 (-) True trnal-cag_25
TU44972 other upstream 545211 21327716 ~ 21330093 (-) True LOC122343135
TU45006 other upstream 600964 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 600964 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 847112 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 954586 21737091 ~ 21740330 (-) True G30372

Expression Profile