RNA id: XM_043237181.1


Basic Information

Item Value
RNA id XM_043237181.1
length 3955
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC122342955
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20680090 ~ 20690873 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTTGGTAGGAGTGGGAGAGTCTGGGGTGCAAATCTCGCCCCGGGGACAATCTGAAACAAACCAATAAGAGCTAAGCCTCATGTGCAGGCAGGCAGCCAGATGTTGAGAGACACTGGTAACTTTACGTAGGAATACCTCCAAGGCTACGTTGTCGTCCTTGACGGAATACGGAGAGGAGAGCAGTGTCATCCCACCCACGGCGAATTGCCAACATACAGAAACGAAGGACATACTCGTGTACAGGGAGGTCTGCCTGCCAGAGTTGTAGAAGTTCGTTGCGCACGGAGAACTTGGTGTGAGTTTGTGAGGGATGATGGCATCTCTTGCTGAGCTGCTCGTGAAATCACTGAAGAACCTGATAGAAGCTGAACTCAAGGAGTTTCATTGGCATTTGAAGATTGCATATCATAAGCATTTTTCAAAGTCTGAAATGGAAAAAGCAGATGTATTCGACACAGTGGATAAGATGGTGGCATGCTTTGGACCAGAAAAAGCAGTGAAGATCACAGTGGATGTCCTAAAGAAGATGAACCAGAATAATCTGGCAGAACAGTTGGAGAATGAATACAAGCAAGGTCAGACTGAGGGCGATATGAATGCATCTTTCACTGCTGGAGagCTGCAAAGCATCTTAGAAActcataaaacaaacatgaagaagaaagctgaatacatttttgagggcaacaaagaaaatgaagcacaaCTCAAGGATGTTTACACAGAACTGTTCATCACAGAGGGAGATATGAAAGATGTTAATCACGAACATGAGATTCTGAAGATTGATGATGctttcaagaacaaaaaaatgcaaaataagccCATTAAATGCAATGATATATTTGCAGAGCTGAGAAAAAACCATGAGGAGAAGATTGTTCTGACTAAAGGAatcgctggcattggaaaaactgtctctgtgcacaagttcattctggactgggcAGAAGGAAAAGCCAATCAAGATATACACTGTGTGTTCCTGCTTCCATTCAGAGAGGTCAATGTGATAAAAGACAAAGAGGTCAATCTTCATGAGTTTCTGATGAAATTTTATCCCAAACTGAAGGACCTGGAGAAATCAAAATTATATAAGGGTTGTAAGctagcatttatatttgatggactGGATGAGAGTCAATTGCCACTGAATTTTAAAAGTGATACACTGAACACTATTGAGGAAAGAGCATCTGTGGATGTGCTGTTTACAAGTCTGGTCAAAGGGACTCTGCTTCCATCAGCTCTTGTCTGGGTGACATcacgaccagcagcagccaatcagatccctccTCAGTATGTAGGTTTGTTCACCGAGGTGCGAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccagaatcatctcacacattaagacgtctcgtagtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctcactgagaacaatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctgCTGATACAGATGGACATGAAGAACCAGAAATATGATGAACAAGAAGAAAGAGAATGTATAGAgtgtttacaattaaataaagagaAGATTTTAAAGTTAGCTAAGTTAGCGTTTGAACAACTAAAGaaggaaaacattgtgttctatAAGGAAGATCTGAAAGATTGTGGTATTGATGCAAATAAAGACGTCGAGCCCACAGGAATGATTGCTGAGATCTTCAGAAGGGAACACAGACTTCATGGAGCAAAGGTCTTCTGCTTTGTGCATCTGAGTGTTCAAGAGTTCCTtgctgcagtgcatgtgttCATCTGCTACCTGAACAAGAACATGCAGgagcttcagtttttttttgatgagCCAGAAGAAAATCTCACATTAAAGAAATTACTGCAAAAGGCAGTTGAAAAAGCCAAGGAGAGTCAGAATGGACATCTGGATCTTTTCCTGCGGTTTCTGATGGGCATTTCACTGCAATCAAGTCAAAACCTACTCAAAGGCCTGATCCCACACACTGAAGACACTACAGAGagcatcacaaaaataactgaatacattaaacaagaacaaaacataTACGATATCTCAGATGAAGCTTcagtcaacttattctactgcTTACTTGAGCTCAAAGATCATTCATTATATGAGGAAATCCAGAGATACCTCAGTTCAGATGAACATTCAGAAAGAAATCTCTCATCTTCAATGTGCACAGTGTTGACCTACATACTGCTGATGTCAGAGAAGGTGCTGGATGAGTTTAACCCAAAGAGGTTCACATTACGTCAAGCAGGCTACACAAGACTCATTCCAGCTGTGAGATACTGCAGAAGAGCCTTATTTGATGGCTGTGGACTTGatgaaacatgctgtgaaaCCATGTCTTCTGCCCTACAATCAAACTCCCAACTGACAGAGCTGAATCTAAGAAGCAAtcatctgcaggattcaggagtgaagctgctttacGATGGACTGAAGAGTACAAATTGTCAACTGAACATACTGAGGTTGTGTGGCTGTAATCTCACTGCTCAGTCTTGTGAGAGTTTATCATTAGCTTTACAAtcatcaaactctgtcctgagagaactggacctgagtaacaatgacctgcaggattcaggagtgaagcatttttctgaaggactgaagagtccaaactctaAGATGGATATTTTAAGATTGTCCATCTGTAATCTAACTGCACAGTCTTGTGAGAGTTTGTCAGCAGTTTTACAATCATCGAACTCTGTCCTGAGAGaactggacctgagtaacaatgacctgcaagattcaggagtgaagctgctttctgaaggactgaaaaGTCCAAACTCTAAGCTGGAGATACTGAGgttgtctggctgtatggtgaaAGAGGAAGGCTGTCATTACATGTCTTTAGCTCTGACTTCAAAcgcctcacacctgagagagctggatctgagctacaatcatcctggagattcaggagtgaagctgctctctgaaaaactggaggatccaaactgctcACTGAACAAACTCAAtgttgatcatggaggagaatccaggattacagcaggactGAAGAAATatgcctgttttttcacactggatccaaacacagcaaacactcGTCTCAaactgtctgaggagaacagaaaaGTGACTCCTGGGTTTGGGtcatatcctgatcatccagacagatttaataatgtttatcaggtgttgtgtagagagaatgtgtgtggacgctgttactgggagatcGAGTGGACTGGAAATGCGtgtatatcagtgtcatataagagcatcagcaggaagggaggcaggaaagagtgtgtgtttggaaataatgatcagtcctggagtttggaCTGCTTTCCCTACAGTtactcattcagacacaataaCATAGAgacaaatcagcatatgagGCCCATCTTAAGCAGAATAAGTAAAACCAAGAAAGGTACTCGTGGTAATATCTACAaagtaggagtgtatgtggatgagagcgcagggactctgtccttctacagcatCTCTGACACAGTGAGCCttatccacacagtccagaccacattcactcagacactctgtcCTGGGTTTAGTGTTCATTTGTCTGtatcatcagtgaaactgtgttgatgaatcagaagagactgatgagATTCTACCCAAATtttgagctgcatgatgaaATGAATACTGCAGCTCACCTTTtcacatacattttacaaataaacaatataaaaatacatataaataacagaatgtgtcagaaatattcagatcaatgtgtgtgttttgtttgttatctCAGTCATTTGTTCTGTATCTGTAAAAAATTCACAAATATGATTGaggaagaaatgtttctgtctgaataaataataatggtaatagtGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44858 lncRNA downstream 2226 20676260 ~ 20677864 (-) True G30286
TU44838 lncRNA downstream 29258 20650106 ~ 20650832 (-) True G30273
TU44837 lncRNA downstream 34555 20644964 ~ 20645535 (-) True G30272
TU44835 lncRNA downstream 47583 20632235 ~ 20632507 (-) True G30270
TU44827 lncRNA downstream 81389 20593319 ~ 20598701 (-) True G30262
TU44867 lncRNA upstream 45273 20736146 ~ 20737160 (-) True G30293
TU44880 lncRNA upstream 168111 20858984 ~ 20861471 (-) False LOC122343123
TU44899 lncRNA upstream 281403 20972276 ~ 20974065 (-) True G30317
TU44912 lncRNA upstream 362105 21052978 ~ 21053654 (-) False LOC122343098
TU44875 lncRNA upstream 375041 21065914 ~ 21068188 (-) True G30301
XM_043237210.1 mRNA downstream 64867 20591115 ~ 20615223 (-) True LOC122342969
XM_043237176.1 mRNA downstream 99582 20568381 ~ 20580508 (-) False LOC122342952
XM_043237177.1 mRNA downstream 99610 20568381 ~ 20580480 (-) False LOC122342952
XM_043237178.1 mRNA downstream 101230 20568379 ~ 20578860 (-) False LOC122342952
XM_043237449.1 mRNA downstream 346809 20330447 ~ 20333281 (-) True LOC122343112
XM_043237187.1 mRNA upstream 2089 20692962 ~ 20716250 (-) False LOC122342956
XM_043237185.1 mRNA upstream 2090 20692963 ~ 20716250 (-) False LOC122342956
XM_043237188.1 mRNA upstream 2090 20692963 ~ 20716232 (-) False LOC122342956
XM_043237189.1 mRNA upstream 2090 20692963 ~ 20716190 (-) False LOC122342956
XM_043237182.1 mRNA upstream 2091 20692964 ~ 20716250 (-) False LOC122342956
TU44338 other downstream 397690 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 441536 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 463851 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 465758 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 466768 20213241 ~ 20213322 (-) True trnal-cag_25
TU44972 other upstream 636843 21327716 ~ 21330093 (-) True LOC122343135
TU45006 other upstream 692596 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 692596 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 938744 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 1046218 21737091 ~ 21740330 (-) True G30372

Expression Profile