RNA id: XM_043237187.1


Basic Information

Item Value
RNA id XM_043237187.1
length 5285
RNA type mRNA
GC content 0.40
exon number 10
gene id LOC122342956
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20692962 ~ 20716250 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGCAGATGAGAGTCCAGATAACTGCCATTCTTGTCATTCTCACGTCTTGTCCTAACAGAAGTAGTAGAGCTGCTGTGAAACACAGCACTTTAAAGGAGGAAAAAGACAGACGTACAAACGTTGAGGAATCATTCACGTTGGCATTGAAAAGCGATTGCAAGTTATTTTCAAAACACAGCGAACATGTCATTGAGGAACGATGGCATCTGTTAAACAACTGCTTTATGATACAATGGATGAGctggaaaaagacaaaatgaagaGATTTAAGGGCTTCTTAAAAGAAGATGGACCTATTCCAGCTTCTGTACTGGAGACGGCAGATGCAACTGACACGGTGGATCTGATGCTGGATCGTTTTGGACCAGAAAAAGCTGTGAAGATCACACTGGATATCCTGAAAAAGATGAAACAGAACAATCTTGCTCAACAGTTAGCAAACAAACAGAAGGAagTCTCAGTTTCATCAGAGGATTGGATGCTGCAGAAATTTTTGGAAACTCACAAAACGAACATGAAGAAACAAGCAGAGCGGATTTTTGAgtgcaagaaagaaaatgaagttAACCTCAAGGCTATTTACACAGAACTTTTCATCACAGAAGGAGATATGGAAGATGTCTTTCAGGAACGTGAGATTATGAAGATTGATGATGCTTTGCAGAAGAAACAAACACTGGACAAACCAATCAATTGCAAcaagttatttacattattaaggGAAAATAATGAGGAAAAGATTGTGCTGACTAAAGGCATTGCTGGTGTtggaaaaactgtctctgtaaacaagttcatcctggactgggcaGAAGGAGAAGACAATCAATATATACACTGTGTGTTCCTgcttccattcagagagatTAACTTAATGACAAATGAAGATTTCAGTCTCCATGAGCTTCTGCTGGAATTTTATCCTGAACTGAAGGACTTGGAGAAATCAAAGCTATATACAGAATGTAAGctagcatttatatttgatggacttgatgagAGTCGACTGCCtctaaattttaaaagtagatcACTGAACACTGTTGAGAAAAAAGCATCTGTGGATGTGCTCTTTACAAGTCTGGTCAAAGGGACTCTGCTTCCATCAGCTCTTGTCTGGGTGACATcacgaccagcagcagccaatcagatccctccTCAGTATGTGGGGTTGTTCACAGAGGTGCGAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccagaatcatctcacacattaagACGTCTCGTACtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctcactgagaagaatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctgCTGATACAGATGAACATGAAGAGCCAGAAATATGATGGACAAGCAGAACGAGAACGTATAAAGCTcttacattcaaataaagaaatgattttaaaactaGCCAAGCTAGCATTTGAACAGCTGAAGCAGGAACACATTGTGTTCTATGAGAAAAATCTGAAAGAATGTGACATTGATGTGAGTAAAGACACAGAGTTCACAGGAATGATCGCTGAGATCTTTAAGAAGGAAGATGGACTTCATGAGACAAAGGTCTTCTACTTTGTGCATCTGAGTGTTCAAGAGTTTCTTGCTGCCGTGCATGTGTTCTTCTGCTACCTGAACAAGGACATGCAGGagcttcagtttttctttgagTCAGAAGAAAACATCACATTGTATAACCTACTGCAAAAGGCTATTGATAAAGTCATGAAGAGTCAGAGAGGACATCTGGATCTGTTCCTCCGCTTTCTGATGGGAATATCACTGAAATCCAGTCAAAACCTGCTCAGAGGCCTGTttgaagaaaacacagaaagcTCCGGAGACACTGAAGACACCACAGAGAACATCAGACAAACAACAGAATACATTAAACGcatacaaaacaagaaaatttCAGATGAAGCTCTAGTGAACCTATTCTACTGCTTACTTGAGCTCAAAGATAATTCATTATATGAGGAGATCCAGAGTTATCTCAGTTCAGAAGGACATCCAGAAAAAGATCTCTCATCTTCAATGTGCACAGTGCTGACCTACATACTGCTGACGTCAGAGAAGGTGCTGGATGAGTTCAACCCAAAGAGGTTCACATCAAAACAAGCAGACTACAAGAGACTCCTTCCAGCtgtgagatgctgcagaaaGGCTCTATTTGATGGCTGTGGTCTTGATGAAATATGCTGTGAAACTCTGTCTTCTGctctacaatcatcaaactctCATCTGACAGAACTGGACCTGAGTAGAAATCACCTGCAGGATTCGGGAGTAaagctgctttctgatggactgaagagttcaCACTGTCGACTTACCATACTGAGGTTGTGTGGCTGTAAACTCACTTCTCAGTCCTGTGAAAGTTTGTCATTAACTCTACCATCATCAGACTCTGTTCTAAGAGAATTGGACCTGAGTtgcaatgacctgcaggattcaggagtgaagcttctttctgaaggactgaaaaGTTCAAATTCTAAAATGGAGATATTGAGATTTTCTATATGTAATTTCACGGCACAGTCTTGTGAGAGTTTGTCATCAGTTTTACAATCATCAAACTCTTTCCTGAGAGATCTGGACCtaagtaacaatgacctgcaggattcaggagtgaagctgctttctaAAGGACTGAAGAGTCTAAACTCTAAGCTGGAGATACTGAGgttgtctggctgtatggtgacagaagaaggctgtggttatgtgGCATTAGCTCTGACTttaaacccctcacacctgaaagagctggatctgagctacaatcatcctggagattcaggagtgaagctgctctctgaaaaccTGGAGGATACAAACTGCTCACTGAAAAAACTTAATGTTGATCATGGAGGAGAATCCAGAATTACAGCAGGACTCAAGAAATatggttgttttttcacactggatccaaacacagcacacactcgtCTCATTCTGTCTGAGAAGAACAGAAAGGTGACATGGGTGGGAGAGTCTCagtcgtatcctgatcatccgGACAGATTTGATCATTATCCTCAGGTGTTGtgtggagagagtgtgtgtggacgctgttactgggagactgagtggagTGGACGTGTGTTTATATCGGTGGcatataagaacatcagcaggaagggagagagtaaagagtgtgtgttgggacgtaatgatcagtcctggagtttgttcTGCTCTCCTGATGGTTACTCATTAAGACACAATAACACAGACAATGATCtctctgtgaagcccatcaTCATCAGCAGAAGAACAGGAGAGTCTGATGATAATATctacagagtaggagtgtatgtggatgagagcgcaggaactctgtccttcttcagcaTCTCTGACAAAGTGACACAtatccacacagtccagaccacattcactcagacactctgtcctgggtttggtgtttattataaatcattagtgaaactgtgttgatgaatcagaagagatTGAAGTAATTCTACCCATAATGCTTTGAGCTGCATAATGAATCAGTAACAGTGAGATGTTATGAATCTCTTCAAGACATTAATACTGCAGCTCAACATctatagaaatataaatcataaataattctatatatGTAATCTGTAATGCcacgccagcagagggagccctcgccCAAGTACTGACTTGTCTCCACTCCCTCTGCACTCATTTTCTGTTTGCCAGCATAAAGCCAGAGCACCTGTTATCAAGTATTGCCAGTTTCATTGCCTTACCAAGTGTTTCTCTCATGATTATTTTGACTGCTATCTTGTTTATGACCTTGCCTGTTTACCCTGACCACTGTCTCTTTGGATCACGCCTGCATTCTGGCAACCTGTTTGGATCCAGACCCATTGCCTGCTTTACTGTCTTTGCTATTTGGAAATCCCTTGAACTTGTTTGCCTATCTGACTGCCTGACTGTTAACGAACCTCTGCCTGTTGTATTTGACTATTCTCTTTTGGATTGTCCCAATAAACCTCCGCACATGGATTTGCAGCCGTCAtcattacagaatacttcgcctTACATCACTCCAGCGGAGGTATCTCAGATGCAAGAGGTACTTGCATACCAAGAGGAGTCACTCAAGGGATATACAAgctgaaagaaatttttgactgtaaataaaatattacgtTTGAATGTCATAATGCATCCAAATTGTCCATTTCACCATCAGTCAATACTAGTAAGGTGTCCATTGTGCCTGTAAATGTTATGCAATTATGCTTGCAGTACATATGAACAAAGAAAACAGGATGCGATATGGCCTTCAAAGCATATATTCGCAAGCTTTTCGACAGCATTTCCTGACAATAAACCTTTCATTTGAACTGAATAACAAAGCAGTTGAGAGTCCAGATGACTgtcattcttttcattctcaCGCCTTGTCCTGGTAAAAGTGAAGAACGTTTAATAGCTGCTGTTAAACAACACTTCAAAGGATGAAAAAGACAGTCGTACAAACCCTGAGATGAGTGTTTCAcgtttcttctgttgttttcatgtttttattttttttttttgtgtgtgatcaATCAAGTGTGTCTAAATGAATCCCAGAAAGCCGTTACTGTTGTGAAATCACTGTTTTACTGGGATTTTAATGTAATACCTGCCAAATAGTGAGCCATTTTtaactataatatatttattaatacttttttcaatCAAAACCAGATTccttatttatttcatgaatgTAACCTGTAACTTACCCGTGATTCTCACCGGTTTCAGTTGTTCAGTTGGTCCTGGtttaacaagttttttttgttttagcactCATAGTTTGTATATAGCATTGTTTGcacatttaaacttttataatagaataaaatgcgCAATCACATAGCCACAATGTTCATAGCAGCCTACACATCAGATATTGTCATAAGTTTATAAGGCCATAAAATAAGAGAGCCTCcttttttgaataaacattCAGACGTGGGGAACTAGTTTTTGGATCTCCGGTGTGGAAACAGATACGGCGCACAATTATTCACTATTTTGGGAGTGCTTTAACGTACAGATTTGTCGCAATAAAAAACTGGTATGCTTTCTTTGCCGGCCATGCAATGACGTTGGTTTCGAGACTTGAATATTCGATTGTTTCATCTTATTTTTGCAAACTCAGCTCAGGCTATGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44858 lncRNA downstream 15098 20676260 ~ 20677864 (-) True G30286
TU44838 lncRNA downstream 42130 20650106 ~ 20650832 (-) True G30273
TU44837 lncRNA downstream 47427 20644964 ~ 20645535 (-) True G30272
TU44835 lncRNA downstream 60455 20632235 ~ 20632507 (-) True G30270
TU44827 lncRNA downstream 94261 20593319 ~ 20598701 (-) True G30262
TU44867 lncRNA upstream 19896 20736146 ~ 20737160 (-) True G30293
TU44880 lncRNA upstream 142734 20858984 ~ 20861471 (-) False LOC122343123
TU44899 lncRNA upstream 256026 20972276 ~ 20974065 (-) True G30317
TU44912 lncRNA upstream 336728 21052978 ~ 21053654 (-) False LOC122343098
TU44875 lncRNA upstream 349664 21065914 ~ 21068188 (-) True G30301
XM_043237181.1 mRNA downstream 2089 20680090 ~ 20690873 (-) True LOC122342955
XM_043237210.1 mRNA downstream 77739 20591115 ~ 20615223 (-) True LOC122342969
XM_043237176.1 mRNA downstream 112454 20568381 ~ 20580508 (-) False LOC122342952
XM_043237177.1 mRNA downstream 112482 20568381 ~ 20580480 (-) False LOC122342952
XM_043237178.1 mRNA downstream 114102 20568379 ~ 20578860 (-) False LOC122342952
XM_043237288.1 mRNA upstream 1732 20717982 ~ 20733084 (-) True LOC122343016
XM_043237287.1 mRNA upstream 1732 20717982 ~ 20733081 (-) False LOC122343016
XM_043237505.1 mRNA upstream 17024 20733274 ~ 20758659 (-) True LOC122343149
XM_043237180.1 mRNA upstream 48544 20764794 ~ 20782505 (-) True LOC122342954
XM_043236076.1 mRNA upstream 88344 20804594 ~ 20814021 (-) True LOC122342278
TU44338 other downstream 410562 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 454408 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 476723 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 478630 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 479640 20213241 ~ 20213322 (-) True trnal-cag_25
TU44972 other upstream 611466 21327716 ~ 21330093 (-) True LOC122343135
TU45006 other upstream 667219 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 667219 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 913367 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 1020841 21737091 ~ 21740330 (-) True G30372

Expression Profile