RNA id: XM_043237199.1


Basic Information

Item Value
RNA id XM_043237199.1
length 3536
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC122342960
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20949743 ~ 20962523 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGCACAACCAGAACCCAGCTGCTTTTCTATAAAGAGTAACACATCCATGCCAGAACCCCTTAGTTTTGGAGATGGAGCAGTGACCTTTAAGCTCAGAGATGATGAGATTGGAGACCTGCACAAGGATTCTCAACAACCAATACATGATGAATTACAAAGGGTCAAAGGCCAAAACAAAACCAGTATGAAGAACAAGTATGAGAGCTTATTTGAGGGAATAAAACTTCAAGAGAATCAAACCCTTCTGAACAGAATCTACACACAACTTTACATTATAGAGGGAGAGAGCAAAGGAGTGAATGAGGAACATGAGGTTTTACAGATAGAGAAAGCAGCCAAAATACAAGACACTCCAATCTActgcaatgacatttttaaacacttatCTGAACCAGGatgtaaaaagaatgaaaataatataaagactgttcttactaaaggaatcgctggaattggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagacttcatgtttgtgcttccatttcgagagctgaacttgattaaagatcatcagtacagtcttcacagacttctgctTGACTTTTATCCTGAACTTGAAGATCTGGACTCAAATATTTATGAGGAGTGtaaagttgtgttcatctttgatggtttggatgaaagcagaatttcactgatgttttcagatgtTCAGAAAGTTTGTGATGTGACTCAGACTTCATCACTGGGTTTGTTGATATCAAACCTGATGAAAGGAGATCTGCTttcctctgctctcatctggatcacctccagaccagcggcagccaatcagatccccaCCAAATACATCAGCCGTCTTACAGAAATTCAGGGATTCAATGACCttcagaaggaggaatattttAGGAAGAGAATCAGTGATGAGCATCAAGCAaacagaatcatctcacacatcagAAGGGCAAGAAGCCTCCACATTATGTGTCACATCcctgtcttctgctggatctcatccaCTGTGCTTCAGAAGCTCCTGGATGGGTCTGAGTGAGAAATccctcaaactctgactgaaatgtacattcacttcctgCTGATTCAGGTCAATAGGAGGAATCAGAAATATGAAGAGAAAGATCCAGAGAAAGTCTTGCAGTCCAACAGAGAAGTGATTGTGAAACTTGCTGAACTTGCTTTTAAACAGCTGGCAAAGGGAAATGTTACATTCTACAAAGAGGACATGAGTGAGAGCAACATAGACATCACTGATGCAtcagtgtattctgggatttgTACTGAGATCTTTAAGGAGGAATCTGTCATTCATCAAAAGAAAGTCTACTGTTTCATACATTTGAGTTTTCAGGAGTTTCTAGCTGCTTTCTATGTGCTTTACTGTCATCTTCTAGAGAAAATGGAGCAATTGcagttgttttttataaatatacaaacatttaaggAAATCCCTTTGTGTCAGCTGCTAATATCAGCAGTTGATCAAACTCTTCAGAGTGAAAACGGACACCTAGATCTTTTTTTGCGATTCCTGCTGGGTGCCTCACTGGAGTCTaatcagagactcttacagGATCTACTGCCACACACAGTGAAAAGCTCAAAGGCAATCAGAGAAACTACACAGTAtattaaagagaaaatcaaAAGAGACGATTTTCAGAATGATATCTCAGCTGACAGATCCATCAATCTATTCCTCTGTCTTCTGGAAATAAATGATGAGACTCTGTACAGAGAGATTCAGGACTTTGTGAAATCAGACAAAAACTCAGAGAAGAAACTTTCTCCTGCTCACTGCTCAACAATAGCCTACATGATTCAGATGTCAGAGAAGGTGCTAGATGACTTTGATCTGAAGAAATACAACACATCGACTGTGGGTAGATGGAGACTGATACCTGCTATGATGAACTGCAAAAAAGCTCTATGCGACAGCTGTAGTCTCTCTGAACAGCACTGTGAAAGTTTGTCCACAGCTCTACAATCATCCCATTTGAGAGaactggacctgagtaacaatgacctgcaggatttaGGAGTGAAGCAGCTTTCTACTGGACTGAAAACTTCACATTGTCAACTGACTGTACTGAGATTGGCAGGTTGTAGACTGACTAGTCAGTGCTGTGAAAGTTTGTCATCAGTTCTACAATCATCAAAGTCCCATCTGAGAGAgatggacctgagtaacaacgacctgcaggattcaggagtgaagctaaTCTCTGCTGGACTGAAGAGTTGTCAATTTAACACACTGAGATTGGCAGGTTGTACATTGACTGGTCAGTGCTGTGAAAGCTTGTCTTTAGCTCTACAGTCATCAAACTCTCATCTGacagagctggacctgagtaacaatgaccttcaggattcaggagtgaaactGCTTTCCactggactgaagagtccacaCTGTCGACTGAACATACTAAGATTGCTCTCTTGTAATCTCACTGGTCAGTGCTGTGGAAGTTTGTCTTCATCACTGAAATCATCAAACACCAgtctgagagagctggacctgagtaacaatgatgTGCAGGATTCAGGAATTAAGATGCTCTCTGTAGGACTGAAGAATTCACACTGTCAACTGAACATACTGAGATTGTCTGGTtgtatggtgacagaggaaggTTGTCGTTATGTGTCTTCAGCACTGAGTTTAAACtcatcacacctgagagagctggatctgagctacaatcatccagGAGATGCAGGAGTAAAgatgctctctgaaaaactagAGGATCCAAACTGCTCACTGAACAAACTCAATGTGGATCATGGAGAAAAGTCCAGGATTACAGCCGGATTGCACAAATATGCCTGTGAtgtcacactggatccaaacacagcacacactcgtCTCAGACTGTCTAAGAAGAACAAAAAGGTGACATATGTGAGGGATCATCAGTtatatcctgatcatccagaaaGATAtgatgtgtgttttcaggttcTGTGTAAAGAGAGACTGtctggacgctgttactgggaggctAATTGGACTGGAGCTGCGGTAATATCAGTCACATATAAAGGAATTGGCAGGAAAGGACAGAGTCGTCATTGTATGTTTGGACTCAATAAAAAGTCCTGGAGTCTGAACTGCTCTGATAACAGATTCACTGTTTGTCACAACAATAATTCAACTGTCATTCACGTCCCTTCGCTCTCCTCTAATAaagtaggagtgtatgtggatgtgTCAGCTGGCATTCTAACCttttacagcatttctgacacacacaaactcacacacttacacacattcagTACAACATTCACAGAGTCTCTATATGTCGGATTTgggttttatcatttaaattccTCAGTGTCCGTGTCATGAGCAACAACAGACCATTTTTTTAGTCAATTTACTcacaaataatgtaattacCTGCAATGTTTGTTTGCGTGGTCTTTGTTAAAGGTCCAGAATTGCGTGTGATATCCCATTGTTCTGTGTATGTTATAAGTGttgaatgattaaatgattcA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko05321 Inflammatory bowel disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44880 lncRNA downstream 88272 20858984 ~ 20861471 (-) False LOC122343123
TU44867 lncRNA downstream 212583 20736146 ~ 20737160 (-) True G30293
TU44858 lncRNA downstream 271879 20676260 ~ 20677864 (-) True G30286
TU44838 lncRNA downstream 298911 20650106 ~ 20650832 (-) True G30273
TU44837 lncRNA downstream 304208 20644964 ~ 20645535 (-) True G30272
TU44899 lncRNA upstream 9753 20972276 ~ 20974065 (-) True G30317
TU44912 lncRNA upstream 90455 21052978 ~ 21053654 (-) False LOC122343098
TU44875 lncRNA upstream 103391 21065914 ~ 21068188 (-) True G30301
TU44930 lncRNA upstream 155292 21117815 ~ 21126071 (-) True G30343
TU44981 lncRNA upstream 313699 21276222 ~ 21279043 (-) True LOC122343113
XM_043237179.1 mRNA downstream 33903 20907255 ~ 20915840 (-) True LOC122342953
XM_043237499.1 mRNA downstream 58068 20888926 ~ 20891675 (-) True LOC122343141
XM_043237263.1 mRNA downstream 78049 20865561 ~ 20871694 (-) True LOC122342999
XM_043237476.1 mRNA downstream 85337 20858423 ~ 20864406 (-) True LOC122343123
XM_043236077.1 mRNA downstream 99210 20847521 ~ 20850533 (-) True LOC122342279
XM_043237209.1 mRNA upstream 67920 21030443 ~ 21038399 (-) True LOC122342968
XM_043237423.1 mRNA upstream 86334 21048857 ~ 21053725 (-) True LOC122343098
XM_043236080.1 mRNA upstream 108849 21071372 ~ 21081090 (-) True LOC122342284
XM_043237196.1 mRNA upstream 269237 21231760 ~ 21247753 (-) False LOC122342959
XM_043237197.1 mRNA upstream 269237 21231760 ~ 21247753 (-) False LOC122342959
TU44338 other downstream 667343 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 711189 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 733504 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 735411 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 736421 20213241 ~ 20213322 (-) True trnal-cag_25
TU44972 other upstream 365193 21327716 ~ 21330093 (-) True LOC122343135
TU45006 other upstream 420946 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 420946 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 667094 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 774568 21737091 ~ 21740330 (-) True G30372

Expression Profile