RNA id: XM_043237200.1


Basic Information

Item Value
RNA id XM_043237200.1
length 3868
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC122342961
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18823925 ~ 18832593 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGAAACTGAAAGTAAGAGCTTCAGTGTCGAGAAGCCGTTCCAGATCGCTGCACAGCAAAACTTACACATTCTATCATATTTGCTGTGTTTCCAAATGCAGAACTGAAATGTCTGTGGAGACCCAGAAAAGCAATGGTGAggtgagagaggaggaggaggatgttGTTCACTGCCAGAACCAGATCGTGGCATCTCCGGATCCCAGCTGTGTGTCCATGAAGAGTAATGCATCCGTAAATCTGCCTCCTGTTTTCAGGGATGAAACCGCGAACTCTGACCTCAGTGTCTCCTCAGAGTCTAGCTGTGTGTCTATAAAGAGTGACGGATCCATAAATCTGCCTCCTGTTTTCAGTGATGGAGCAGTGACCTCTGGCCTCAGtGTGAAAAAGAATGTTCCTGTCCAGCATCAGTTAAAATGTGGAGTTTGTGACCAGGTTCTGAAAGACCTAATCTCTATCACCTGTGGACACAGTTTTTGCAGAAACTGCATCTGTTGCTATTGGAAAAGGTTCGGTTCATCAGAAAACTTTGCCTGTCCTCGATGTAGAAAGagatctagaacacagcctgtTCTAGAAACACATAAAATCACAGGAGGAGCCAACCTGCCAAATCCCAGTAATGACAAGAAGCATGATTCTGATCAACCAGTATATGATAAACTGCAAAGAGTCAAAAACCAACACAAAACAAGTATGAAGAACAATTATGAGAGATTATTTGAGGGAATCAAACTACAAAAGAATCAAACTCTGCTGAATAAAATCTACACACAACTTTACATcatagagggagagagtgaaggggtgaatgaagaacatgaggttTTGCAGATGGAGACAACACATAGAGCACAAGACAGTCCAATCTTGTGCAATAACATCTTTAAACCCTCACCTAATCGAGTATATaaggaaaaagacaaaattaaaacCGTTCTTACTAAAGGCATTGCTGGAATTGGTAAAactgtctctgtgcagaagttcattctaGAATGGGCAgagggaaaagccaatcaagatgtagatttcatgtttgtgcttccatttcgagagctgaacttgattAAAGATCACCAGTACAGTCTTCAAAAACTTATTCTTGACTTTTATCCTGAACTTCAAGATCTGGACTTAAAGATTTATGATGAATGCAAAGTTTTGTTTATCTTTGATGGcctggatgaaagcagaattacactgatgttttcagacAGTACAAAATTTTCTGATGTGACCGAGACTTCATCAGTGGATGTATTGATGTCAAACCTCATTAAAGGAGAgctgcttccctctgctctcatctggatcacgtccagaccagcagcagccagtTTGATCTCCACCAAATACATTGACCGTATGACAGAAATTTAGGGATTCACTGACCCCCAGAAAGAAGAATATTTCAGGAAGAAAATCACTGATGAGCAGCAAGCCAACAGAATCATCTCTCACATTAAAAGGTCAAGAAGCctccacatcatgtgccacatacCAGTCTTCTGTTGGATCTCAGCCACCGTGCTTGAAAACATTCTAAATAAAGATCTCTGTGCAAAAATCCCTCAAACTCTTACTGAAATGTATATCCACTTTTTGATGATTCAGCTAAACATGAGACATCAGAAGTATGAAAAGAGTGATCCAGAGAAACTCATTCAATCCAACAGAGAAACAATCATAAAACTTGCTGAACTGGCTTTTAAACAACTGATGAAGGGTAATGTCATGTTCTATGAGGAGGACCTGACAGAGAGCAAAATAGACATTACCGATGCCtcagtgtattctgggatttgCACTGAAATCTTTAAGGAGGAATCTGTGATTCATCAGAGAAAAGTCTACTGCTTTATACATCTGAGCTTTCAAGaattttttgcagcatttttcacatttgtctcatttttacaaaataacagTAAGGTTCTGAAATTGTTTCTAAGGGGAAAATCCAAAACTCAGTCTGAGAAACTTCATCTGGATATAATTCTGAAAGGAGCAATAAACAAAGCCCTGACAAGTAAACATGGACATCTGGATCTTTTTTTGCGGTTTCTGATGGGAATCTCATTGGATTCCAATCAGAAACTCTTACAGGAtctactgacacacacagaaaacacctCAGAGAGCATTAACAAAGTGATCCAGCATATCAAGAAAGTTCAAAAAAAGAATGCTTGTCCTGAACGATGGATAAATCTCTCACACTGCTTGCTTGAAATCAAGGATAAATCTCTGTTTGAAGAAATCAAGAGTTTCTTGAGTTTcggaaacaaaaacaaaaccctttCTCTTTTACAATGTTCAACTTTGGCAAACATGATCTTGTCGTCAGAGGAAGTAATGGATGAGTTAGATCTTGGAAAGTATAACATAAAATCAAGAGATGGTCAACAGAGGCTGCTACCTGCTATTaaaaactgcagaaaagctctatgtgcAAGCTGTAACCTTACTGATCAGTGTGGTGAAACTCTAGCATCAATTCTACAATCACCAAACTCCTGTCTGAGAGAACtagacctgagtaacaatgacctacAGGactcaggagtgaagctgctctctacTGGACTGAAAAGTCCCAACTGTAAACTGGAGATACTTAGattGTCTGGCTGTATGTTGACATCGGAGAGCTGTTGTTatctggcttcagctctgagttTAAACCCATCACATCTGAGAGAGTTGGATCTGAGCTTCAATCACCCAGGAGAAACAGGAGTCAAGATGCTCTCTGAGACAATGAACAATCCTAAAAGCACATTGGAGATGCTTAACATGAATCATAGAGGAGAGATCAGGATTACACCTGGACCTCGAAAATATGCCCTTGATCTCACAATGGAACCAAATACAGCTCAcacttatcttgctctgtctgaggagaacaagGTGTTGACGTACATGAGAGATGAGCAGCCGTATCCTCATCATCAAGAAAGATTTGATCATCACCCCCAGGTTCTGTGTAGAGAGAGTCTCtctggacgctgttactgggaggctGAATGGTGTGGAGATGCTGATATATCAGTGGCATATAAAGGAATCAACAGGAAAGGAGAGAGTAATGACTGTGTGTTTGGATGCAATAAAAACTCCTGGAGTCTTTACTGCTCTAATAACAGGTTTATCGCCCGTCACAATAATAAGAAAACCGACATACGTGTCCCTTCGGGCTCTTCTAATAGAGTAGGAGTGTATCTGGATGTGCCAGGTGGCACCCTGTCCTTCTACAatgtctctgacacacacaagctaacacacttacacacattcacCTCCACGTTCACTAAAAACCTCTATGCTGGATTTGGTCTTTATTTCCTCAGCTCCGTGTCTCTGTGTCAGATTTCTGTTTGAGACAACAAACCCACGTCTAAAACAACGCTGATTGTATTTGGACCTTCTCCATTTCAAATGGGCCATTTTGAACATTCTTCAAGTCTCCATTACAAagtttaattttagaaatatttatatacaattattgaTAGTCCCTATTTACAACTGAAAAGCAACCTAGGCCTACTACTTATTATAACGAAAAAATGCGATCAGTGTGACTGAGCCAATCAGCTATGCGAGTTATGCAATTCATAAATCACTAATCTGTTCTTTACGCACACTATCTAAATAATAGATCCATTATGCAGCGTAGAGagctttaattgatttaaatggaACTTCTAAAGTTTATTAGGAAAGTCTGCTAATATAATATTGATTCAGAAATGGAAGAATTCATTAAACAAGATGTAAATATTAAGTGTTTTACATTGTACAACTATAACAGTATTGCCTGATTTTGATCTATTTAGTCAATAAAAGTCTcaattaaaacatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43902 lncRNA upstream 8647 18814883 ~ 18815278 (+) True G29633
TU43888 lncRNA upstream 38679 18785045 ~ 18785246 (+) True G29627
TU43851 lncRNA upstream 158842 18662860 ~ 18665083 (+) True G29600
TU43831 lncRNA upstream 220609 18600428 ~ 18603316 (+) True G29591
XR_006250718.1 lncRNA upstream 229809 18591447 ~ 18594116 (+) True LOC122343196
XR_006250682.1 lncRNA downstream 70642 18903235 ~ 18907824 (+) True LOC122343164
TU44148 lncRNA downstream 99726 18932319 ~ 18932690 (+) True G29777
TU44169 lncRNA downstream 134794 18967387 ~ 18967714 (+) True G29797
TU44175 lncRNA downstream 213117 19045710 ~ 19053414 (+) True G29803
TU44189 lncRNA downstream 247175 19079768 ~ 19080189 (+) True G29809
XM_043237281.1 mRNA upstream 9331 18810860 ~ 18814594 (+) True LOC122343011
XM_043237280.1 mRNA upstream 9331 18810860 ~ 18814594 (+) False LOC122343011
XM_043237430.1 mRNA upstream 13962 18805450 ~ 18809963 (+) False LOC122343102
XM_043237434.1 mRNA upstream 13962 18805451 ~ 18809963 (+) False LOC122343102
XM_043237431.1 mRNA upstream 13962 18806132 ~ 18809963 (+) True LOC122343102
XM_043237361.1 mRNA downstream 33260 18865853 ~ 18869783 (+) True LOC122343055
XM_043237394.1 mRNA downstream 62308 18894901 ~ 18897790 (+) True LOC122343078
XM_043237213.1 mRNA downstream 76323 18908916 ~ 18915022 (+) True LOC122342974
XM_043237355.1 mRNA downstream 86007 18918600 ~ 18922510 (+) False LOC122343048
XM_043237353.1 mRNA downstream 86051 18918644 ~ 18922510 (+) True LOC122343048
TU43756 other upstream 362608 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 522736 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2349544 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2838199 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 2982070 15841372 ~ 15841855 (+) True G28891
TU43926 other downstream 50586 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 457627 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 898669 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 913148 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 1205345 20037938 ~ 20040195 (+) False LOC122343063

Expression Profile