RNA id: XM_043237201.1


Basic Information

Item Value
RNA id XM_043237201.1
length 5821
RNA type mRNA
GC content 0.50
exon number 11
gene id abl1
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17939684 ~ 17963519 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGACGTCACGAGCGTAGCTCGCGTGCGCGAACATGGCGGTTCCTGCGACGACGAACGACTCCGAGAAAAGTGCTGAAAGTTACGAGGCGAAGCGAAGACATGACGGGGATCAGCATTAAAAGTCTGCGGAAGAGTCCAGCGGATGTTCGGTGAGGAGTCGATCCCGACAGGAGAGCCGTAAAGACGGCGCGGAGAGAGTTTACTGTCGCCTGAGGAGCGAGAGACACGCGGAAGTGACGAGAGACTTTAACAACTACAACTCCAACAAACTCCAGCTAAACAACACAAACCAAAGCCGCACCGACCCAGAGCTAACCCGGGATCAAACTCCGCGGATTCCCGCTTCAGGGTTTCTGAGGGAGTTCAAACAGCGGCCTCGCGCCGACTTTTAAcgttgcttgtgtttaactacctGAACTTTCGTCTGAAGGCGGGTTTCTTTCGAGCAACGGCGTTATTTACGTCAGTGACGTCGATTATTTACTCGTTTACAGACGATACAGATGCGTAAGAATGACCTCTGACTGACACGCGATCACTAGCAAAGAGACCCCTCACGGTTTAGCTTTTAATGAACCGTAAGATTTTTCACTTTCCCgctcattattaataataataataataataatgatgatgatgatgatgatgatgatgatgattgacTAGAGCTCAGCGCGCGCGAGGTGACGCGAACTAATTATGAGATCCGACGCGCGTTCACGTTAGCGTGACGTCACTATGATTGACAGCTCCGCAGAGCGTGCCTGCGCCGGAGGTTCCAGTGAAGGTGATTGGTTCTGATTCTGAGGATGGATGCGTGTCCCTCAACGCTGTCTGTTCTGTTCTTGAAAGCACGCAGCTCTCTTTAGCTTCTATGCACTCAAAGCCGTGAAGTCTGACGTCCAGCAGTCGATGCATGACCCGAGACCAGACCGCCCTCGTCTCTCCGTGGTCAGTAACGCCCCGTGATCCCTTATGGGGCAGCAGCCTGGGAAGTTAGTCGGGGACCAGAGGAGACCGAGTCTGCCGGCGCTGCCTTTCATCAAGGGAGCAGGGAAGAGAGAGACGTCTAGACAGGGAGCTCAGCACTGCAATGTGTTCACCGTCCACGAAGCGCTCCAGCGGCCGGATTTCGATGCTCCGGGTCTGTCCGAGGCGGCGCGCTGGAACTCCAAAGAGAATCTGCTGGCCGGACCCAGCGAAAATGACCCCAATCTGTTCGTAGCGCTGTACGACTTCGTCGCTAGCGGCGATAACACGCTCAGCATCACCAAAGGAGAGAAGCTGAGGGTTCTGGGATACAATCACAATGGCGAGTGGTGCGAGGCGCAGACCAAGAACGGCCAGGGCTGGGTTCCCAGCAACTACATCACGCCCGTCAACAGCCTGGAGAAGCACAGCTGGTATCACGGGCCCGTGTCCCGCAACGCCGCCGAGTACCTGCTGAGCAGCGGCATCAACGGCAGCTTTCTGGTGCGCGAGAGCGAGAGCAGCCCGGGTCAGAGGTCGATCTCGCTGCGCTACGAGGGCCGGGTCTATCACTACCGCATCAACACAGCCTCGGACGGCAAGCTGTATGTTTCGTCAGAGAGCCGCTTTAACACGCTAGCGGAGCTGGTTCACCATCACTCCACCGTCTCCGACGGCCTCATCACCACGCTGCATTACCCAGCGCCCAAACGCAACAAGCCCACCATCTACGGCGTCTCACCCAACTACGACAAATGGGAGATGGAGCGCACCGATATCACCATGAAGCACAAGCTGGGCGGAGGACAGTATGGAGAGGTGTACGAGGGCGTCTGGAAGAAGTACAACCTGACTGTGGCCGTCAAAACACTAAAGGAGGACACAATGGAAGTGGaagagtttttaaaagaagctgCGGTCATGAAAGAAATCAAACACCCGAACCTGGTGCAGCTGTTGGGTGTCTGCACACGGGAACCTCCGTTTTACATCATCACCGAGTTCATGACCCACGGAAACCTGCTGGATTACCTGCGTGACTGTAATCACGAGGAGGTCAATGCTGTGGTGCTGCTCTACATGGCCACGCAGATCTCCTCTGCCATGGAGTATCTGGAGAAGAAGAACTTCATCCACAGGGATCTGGCTGCCCGTAACTGCTTAGTCGGGGAAAACCACTTGGTCAAAGTGGCAGATTTTGGACTGAGTCGCCTGATGACTGAAGAGACCTACATAGCCCACGTAGGAGCCAAGTTTCCCATTAAATGGACCGCCCCGGAGAGTCTGGCCTATAATAAATTCTCCATCAAGTCAGACGTGTGGGCATTTGGTGTCTTGCTTTGGGAAATTGCGACCTATGGGATGTCTCCGTATCCTGGCATCGACTTGTCTCAAGTGTATGAGCTACTAGAGAAAgattaccgcatggacagaccGGAGGGATGCCCAGAGAAAGTCTATGAGCTCATGAGGGCCTgTTGGAGGTGGAAACCTGCAGAGCGGCCTTCTTTCGCTGAAACCCACCAGGCGTTCGAGACGATGTTTCAAGAGTCCAGTATCTCTGACGAGGTGGAGAAAGAGCTGGGTAAGAAGGGCAAGAAGCTGACCCTGGGTCCGATACAGCAGGCTCCAGAACTTCCCACTAAGACGAGGACTCTGCGAAGACATACGGACAGCAGGGATGGCGACAGTCCGGACGCAGCCGAGGCTGAGGTCACCGGGCCCCCGATGCTCCCGAGGCCCGTCCTCGATAGCAACCTTAACGAAGACGATCGCTGCCTAGCCAAAGATAAAGATAAGTTCCGAATGAATCCATTCAGTTTAatcaagaaaaagaagagaacgGCTCCAGCGCCTCCTAAACGCAGCAGCTCCTTCGGGAAGATGGATGGGCCCCTGGATCGAAGAGGACTGAATTCTGACTGCAGAGAGGATTTCAATAATGATGGCATCGAGCCTTCCAAAATGTTCGCCTCCAACAATACAGCGATCATTGGAGTCACCAACGGAGCACCGGTGTATCCCGGTCAGCTCTTTTCATCTCATTCACGGAAAAAGGGCACAGCGTCCGGCGGCGGAGGGAAGCTAGCCACAACTCCACCCACAGAAGAAGACCCCATATCAAACTCCAAGCGCTTCTTAAGGTCTTCTTCTGCCTCTAGCATGCCTCCAGGGTCCGAGCGCACAGAGTGGAAGTCGGTCACTTTGCCCCGTGATATCCAGTCGTCTCACTTCGATTCGGGAACCTTCGGAGGAAAGCCAGCTCTGCCTCGCAAGAAAGCTGATTGTGTACCCCGCGGCGGCACTCTTACTCCTCCACCGCGCCTTCCCAAGAAAACCGACTCTGATGCCCCAGATGAAGTGTTTAAGGACTCTGAGTCAAGTCCTGGATCGAGTCCCCTGACTCTGACACCGAAGCTCAGCCGCCGCACAGAGAACTCCAAAACGAGTGCCTTGCAAGCGGAGCTGTTCAAACCCAGTGTGCTTCCTCCTCTAGGAGACGAATGCAGACCTCGCAGGCTCAAGAACTCTTCTGAAGTCCCTGGACAAAGAGACAAGGGGAAGTTCGCCAAACCCAAACCAGCTCCTCCTCCGCCTCCGGTCTCGAGCGGCAAATCCGGGAAGACTTCAAGGAGTCCCACTTTTGACGTTTCATCGGATACCAAAGTCAAAGGCTCGTCTGAACAAAGCCCTCCCAGTCCCAGCTCCGCAGAACAAGGCAAAGGCCTTTCCCAAGAAAGTGCTAAGAAAGTGCCAAAAAACACCTCAAAAGTGAACCCTCCAAAGACGACGTCTATATCCCAGAGCGGTCAGCTGCCAGGGATGGGAACAGGATCGGCAGTCGGTGATCCAGGATCCAACTTCATTCCCCTCATGACGACCCGGCGCTCGTTAAGGAAGACGCGGCAGCCCTCGGAGCGGCTCTCTAACTCCTGCATCACGCGTGAGATGGTCCTGGAGAGCACCGAGCTCCTGCGAGCCGCCATCGGACGTATTTCAGAGCAGACCGGCAGCCACAGTGCGGTGCTGGAAGCCGGCAAGAATCTGTCCAAGTATTGCGCGAGCTACGTGGAGTCCATCCAGCAGATGCGCAACAAGTTTGCGTTCCGTGAAGCCATCAATAAGTTGGAGAGCAGCCTGCGCGAGCTGCAGATCTGCCCTGCTGCCACCGGGGGAGCCAACACGCCTCAAGACTTTTCCAAGCTGCTTTCCTCCGTCAAAGAGATCAGTGACATTGTTCAGAGGTAGCGGAGAAGAGCTCGGAGGCGACCCGTATTATCCGAGTGGTATCCCATCGACCCACCTCAGCTTTACTTATGCCAAATACAGGAACATTTCCCAACGGTTCAGTGTCTTATTACTGTGCACAGATGCAGAGGAACCGTTCCTCCAGAGTCCGTTTGGCAATCTTAAGGTAGCACAGGTCCAAGTTGACTTGATTGAGTCTTTCACAGTAATTCCTTGACTTTCCTCgatgcaaacttttttttaaatatttttttaatagtaaaaatatctataaattcTGGATTTAAGATGCTTACTAAGTAAAACTTTGTCTTGTTGTCtggaaaaatgattaaaattttctttgtttttgtttaaaacaagtaaaaataatcttgtttagCCTTTGAATTAAGTGTGTTTTTCATAAAccattgcaatatatttttatttgttttaagcaaaaaataacaaaagttgGGATTtgaggttgttgttttttttagaaaacaagatAAGTTTTACTTGTCAAGTGAATGCATCTTGATTCAATAATTTgtagtgtgtttttattagaaAACGAGACAAAAGTGCTAAggaagaatatttttttttgcagtgcttcTCTGCAAGTATTtgataaaaacagcattacttCATGACTGACAGAAAAACACCTCATGTGCCTCACATTTCCAAACGTTTTTACGggatcaaaatgtatttttgcagtaCATACACGATCATACTATTGATAAAGACTTGTTTCGCTTAGTTTTAGTATGATTGGTCAAGAAAGCTCTTCGTTGCGAGATGTGAACGCTCCCTGTGATATGAGGAACTTGATTATGGAATCGACTGATCACGTATTCTGATTGCGACACTGTGCCATGATTGACATTTCAGCGATGCGGTCGGAAAGTCGGTTTTCCCATCTTTTCGAGGATTATGAACAAGTGTTCCTTCAGCACAATCACTGCAGACTCCTTTCTGAAAATACAGTCGCCTTAAAGAGACTCGCTGGACAGGAATCACGGATCAGCGAACGAAACACACTACTGTCTCAAGGAGAAAGACTTGAGAAGCTTAAGAAGCAGTATATGTAtagatgtttttgtaatgtcCTCTGAGAGATCTTCGGTTACCACTTAAGTTGTCATTTCAAAGGTTTTCCACACACCACTGACAGAAGTGCTCCGGGGTCACGGACGTGATCGGAGCGGCTTTATCCGATGACCACAAGCCCCACGATTCTCACCGAGTCGATGACTATCTTACTAAAACTTTCCTGTCTGTTTTGCTTGTGTAATTGAAATGATGCAGTTGTTTCAGTATTAGTTTGTCTTTTCTGACACTTTGCCATCAGACTGCGACGcccgaggaggaggaggccaAACACAAGCTGCCTTTAATTCAACATGGTACTACCAGTGTTGACATTtcgtgtttttttccttttaaaatcatGCCACtactttttcatttgtattcaaGCCTCACACTTTTGTAGACTAATTGCTCGTCTTTGTAAATACACGTCACCTATTTTCAGTCCATTCTTCCTGTAACCTTGGTGCAATTTTTGTTGCATAAAATACAAAGCAATTTTGCTACTTGAACAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG:

id description
K06619 ABL1; abelson tyrosine-protein kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43518 lncRNA upstream 7280 17931884 ~ 17932404 (+) True G29364
TU43430 lncRNA upstream 16795 17920709 ~ 17922889 (+) False G29318
TU43427 lncRNA upstream 20074 17916054 ~ 17919610 (+) True G29318
TU43454 lncRNA upstream 84320 17854461 ~ 17855364 (+) True G29329
TU43463 lncRNA upstream 115419 17823898 ~ 17824265 (+) False G29334
TU43659 lncRNA downstream 36078 17999597 ~ 18002479 (+) True G29476
TU43661 lncRNA downstream 36078 17999597 ~ 18001240 (+) False G29476
TU43674 lncRNA downstream 95816 18059335 ~ 18060916 (+) True G29484
TU43755 lncRNA downstream 472124 18435643 ~ 18460595 (+) True G29544
TU43761 lncRNA downstream 478112 18441631 ~ 18465837 (+) True G29548
XM_043237406.1 mRNA upstream 1768 17933305 ~ 17937916 (+) True exosc2
XM_043237407.1 mRNA upstream 1768 17933368 ~ 17937916 (+) False exosc2
XM_043237498.1 mRNA upstream 24090 17912439 ~ 17915594 (+) True fabp1a
XM_043237496.1 mRNA upstream 24249 17912441 ~ 17915435 (+) False fabp1a
XM_043237497.1 mRNA upstream 24249 17912441 ~ 17915435 (+) False fabp1a
XM_043237237.1 mRNA downstream 21474 17984993 ~ 17997658 (+) True ddx54
XM_043237386.1 mRNA downstream 239216 18202735 ~ 18210893 (+) True lman2la
XM_043237485.1 mRNA downstream 255197 18218716 ~ 18222320 (+) True LOC122343129
XM_043237484.1 mRNA downstream 255197 18218716 ~ 18221257 (+) False LOC122343129
XM_043237471.1 mRNA downstream 584012 18547531 ~ 18554389 (+) True rab21
TU42966 other upstream 1465303 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1953958 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 2097829 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 2284503 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 2384002 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 336896 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 472941 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 919660 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 1326701 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 1767743 19731262 ~ 19786128 (+) False G29835

Expression Profile