RNA id: XM_043237203.1


Basic Information

Item Value
RNA id XM_043237203.1
length 6349
RNA type mRNA
GC content 0.41
exon number 11
gene id LOC122342964
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20655215 ~ 20677909 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACAGCATTAGAGGACTCAGAGGACGGAGAAGAAAGATCTGAAGTGAGAGCTTCATTTTTCTGCGGTTATTTTTCTTGTTACTTCTGTGTGTCTGAGATGCTGTGGTGATttcaatgattttatttatttaaacatttgtcaaGATCAACAGATGATCACGTTTCTCTGCAAAGGCTGCGCATTCTCATATTGTTGTCACATGGTGTGCTTTTGAGTCTTCATTATTCACAGTATTTCTTATCATGTGCTCTTATGGCAGCACTCAGTTTGAAAGGACCAGAACCTTATTTTGCAGAGTTAGACATGtttctggatcaacatctttgttgaccctggagcaacattgtgattagccaattACATTTGAAGAACCAGATAATAGTTTCTGAGAAGTTTAGgtttacaatcagtgtttggttcttgtacatcagtgttatttaacgtcattacattttactgtagagattactcatgggtaaggtttaggtgtagagatatggtcaagactagatgttgttccagggtcaacaaaatatgttgaccaaGGAACAGGTCGATTGGTTGTGGTACAAATCATCTTCCAACATGATTCTGGACTGTAAAAGAACTCGAATCGGATCCTGGTCTGGCTAAGCTTCACTTTATTAGAGCCGATTCCCAAGCCGATTtgctctctccagtgtggaaAAGTGTGAAGAATTTATTCTCGTTTCTAGCACAGACACATTTGGAAGCAGTCAGGAAGTCTACAGGGGAGGGGGTTCGGTCGTCAGATCGTTGCAGAGAGGCGCTCTCTCTCCGCAGGGCCCTAGACTAGACTGACTACTCCCCTTTCTCTCCAACATGGACTGGACGCGGCCGATTCTGCACTCCGCTACGCCAGTTGTGGAACATATGTGAAGATCAAAGAAGTGAGTCAGTGACAGAAGATGACTTCGGAGCAGGATATGGATGCAATGGATGACAGTCAAAAcggaaacacattttttaaatgctgttgtcGCCAAAGACTGAAGTTCGAGACATCTGATGAACATAATTGCTTAGAGGCAgctgaaaaacagagagaaaaacaagATCCGGTCCAGATGAGAAATGCCCCAACTACAGTCAGCGTTGATATATATGCTGATAAAGGTGCGAGTGTAAATGCTCCTTTATTGACCGGAAACACCTTCACAGGACCAGTAACCATTTATGGCTCAAATGCTGAAGGAAACGATCAACAGAAGTCTTCAGAGATGGCAGAGGAACTCAGAAAAGCAAAAGAGAATTGGATGATGCAGGAATTTTTGCAAACTCACAAAACGAACATGAAGAAACAAGCAGAACGGATTTTTGAgtgcaagaaagaaaatgaagttAATATCAAGGCTGTTTACACAGAACTTTTCATCACAGAAGGAGATATAAAAGATGTCTATCAGGAACGTGAGATTATGAAAATTAAAgatgctttaaataagaaacaaacacaagacaaacCAATTAATtgcaacactttatttacattattaaggGAAAATAATGTGGAAAAGATTGTTCTGACTAAAGGCATTGCTGGTGTtggaaaaactgtctctgtaaACAAattcatcctggactgggcagaaggaaaagccaatcaagatatacactgtgtgttcctgcttccattcagagagatTAACTTAATGACAAATGAAGATTTCAGTCTCCATGAGCTTCTGCTGGAATTTTATCCTGAATTGAAGGACCTGGAAAAATCAAAGCTGTATACAAAATGTAAGctagcatttatatttgatggacttgatgagAGTCGCCTGTCtctaaattttaaaagtagatcACTGAACACTGTTGAGAAAAAAGCATCTGTAGATGTGCTCTTTACAAGTCTGGTGAAAGGGACTCTGCTTCCATCAGCTCTTGTCTGGGTGACATcacgaccagcagcagccaatcagattcctcCTCAGTATGTGGGTTTGTTCACAGAGGTGAGAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAGGAGATTCAAAGATGAGAATCTGTCCTCCAGAATCATTTCACACATTAAGAAGTCTCGTAgtctctacatcatgtgccacattcctgtgttctgctggatcacagCTACAGTACTTCAGAACAATGAAGAGAACATCAGCACAACactcactgaaatgtacattcacttcctgCTGATACAGATGAACATGAAGAGTCAAAAGTATGATGGACAAGCAGAAAGAGAACGTACAAAGCTcttacattcaaataaagaaatgattttGAAGCTAGCCAAGCTAGCATTTGAGCAGCTGAAGcaggaaaacattgtgttctatGAGGAAGATCTGAAGAAATGTGGTATTGATGTGAGTAAAGACACAGAGCCCACAGGAATGATCGCTGAGATCTTTAGGAAGGAAGATGGACTTCATGAGACAAAGGTCTTCTGCTTTGTGCATCTGAGTGTTCAAGAGTTTCTTGCTGCACTGCATGTGTTTACCTGCTACCTGAACAAGGACATGCAGGagcttcagtttttctttgagTCAGAAGAAAATGTCACATTGAATAAGCTATTGCAAAAGGCCGTTGATAAAGTCATGAAGAGTCAGAGAGGACATCTGGATCTGTTCCTGCGGTTTCTGATGGGAATTTCACTAAAATCCAGTCAAAACCTGCTCAAAGGCCTGGTAACACATACTGAAGTCACCACAGAGAGcatcagacacactgatgaCACCACAGAGACCATCAGACAAACAAAAGCATACCTCAAACATGTACAAATCAACAAAATCTCAGATGAAGCTCtagtcaacttattctactgcTTACTTGAGCTGAAAGATCATTCATTATATGAGGAAATACAGAGTTACCTCAGGTCAGATGAACATCCAGGAAGAGATCTCTCACCTTCAATGTGTACAGTGCTGACCTACATACTGCTGACTTCAGAGAAGGCGCTGGATGAGTTCAACCCAAAGAGGTTTACACTGTCATCGTCACAGTACACAAGACTCCTTCCAGCTATAAGATGCTGCGGAAAAGCTCTATTTGATGGCTgtggttttgatgaaacatgctgTGACACTGTGTCTTCTGCTCTACAATCATCGAATTCTCATCTGATAGAGCTAGACCTCAGCAGAAATCACcttcaggattcaggagtgaagctgctttctgatggactgaagagttcaCACTGTCGACTGAACATACTGAGgtTGTGTGTCTGTAACCTCACTTCTCAGTCCTGTGAAAGTTTGTcatcagttttacaatcctcaaactctaCCCTGAGAGAgatggacctgagtaacaatgacctgcaggattcaggagtgaagctgctttctgaaggactgaagagtccaaactctaAGCTGGAGACACTGAGgttgtctggctgtatggtgacagacGAAGGCTGTCATTATGTGTtttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcacccaggagattcaggagtgaagctgctctctgaaaaactggaggatccaaactgTTTACTGAAAAAACTCAATGTTGATCATGGTGGAGAAtccaggattacagcaggactCAAGAAATATGAgtgttttttcacactggatccaaacacagcacacactcgtctcattctgtctgaggagaacagaaaggTGGCACATGTGTTTGAGTATCagtcgtatcctgatcatccgGACAGATTTGATCATTGGGAGCAGGTGTTGtgtggagagagtgtgtgtggacgctgttactgggagatcGAGTGGACGGGACATGTGTATATATCAGTGACATACAAGAACATCAGGAGGAAGGGACAGGGTAGAGAGTTTTGGTTTGGACGTAacgatcagtcctggagtttgctCTGCTCTCCTGACAGATACTTATTCAGCCACAATGACATAAACACTCATCCCTCTGGGAAGCCCATCATTAACAGAAGATCAGGAGTGTATGGTAAaataggagtgtatgtggatgagagcacaggaactctgtccttctttaGCATCTCTGACAAAGTTACTCATAttcacacagtccagaccacattcactcagacccTCTGTCCTgggttttatctttattttggatcatcagtgaaactgtgttgatgaatcagaagagactgaaGAGATTCTACCCAGAatgctttgagctgcatgatgaatcggtaacagtgagatgttttatttttgtttaaaaataaaaaaagtcacaaacatGATCGTTAATATAATCGGTTCCTCACATGACTGAAATGACCTTCTGACATtatgaaatatgacatttaattaCAGCAGAGTGTGTAGAGTTGTGCAACTGTTCACCCAATTTGACTCGTTTGTCAAAGCTGGTTTAAAGTTTATAGTTGAGAAAAATGGGTGTGCTTTTTGAAAAATTGTGTTATGGCTTTGAATTTTTAGTTCAAAAGCGTGGTTATTGTGTTTTGCAAACTGAGAAAAACTGTACATGTAAATGTACTCTTAGTGAAAATTTCACCTTTGATGGTACAGTCAATGTCCCAATATCATTGGGAAAGCTTGCCCAGACAGTACCTTGGAAAAATCTTCTGTAATACTAGAATATGCAAGTGTGTCACAAAGTAATGTACACTGACTTCCACATTCCTGGAACTTTTTATCACATTCTAGTCTCTTGAGGAATTCCACTAACTTTGTTACTGCTTCTGATATTGAGAGATTTTGATGGAGAACTTTCTTTAATTTCTGAAAATGGTCCGTATGCTATAAGTCTTCTTCTGTAAGAAAGAACCCACATGTATTGACAGGGGTCCCAATGGGTCAAAAAGTACTGAACAAagtcttcatttcattttattgaatagCAGAAAAAGAGACCACACGTagcattgtaataaaaaagtagtttatttagaaaaaatactaAGCATGACATAAGTAGCTTTTAGAGCAGGGTTTCTCAAATCATGccctggaggtccaatgcactgcagagtttagctccaaccctgctAAAGCTCACCTCACCTAATGATCCCGAAGACACTGAGgagcatgctcaggtgtgtttgattagggtacgagctaaactctgcaggatctAGAAGCACAGATTTGAGGATCACAGATAGAGTATGAAGATGATGAGCCAGAGATGAAATCTGTATTAGCAGGAAAACGAATGTTCCAGATGCAGAGAAGGAGACATCTCAGAAGATCTTCTCGGAAGACTGGACTGGCAAATAGGAGCACCAACGGACACCTGGCCTGTAATGACTGATCTTTCTGTTAAAGTGAAGTAAAACTCTCTCTGACTCCATTTCCGAACTGCTGTTTTAGCCTCACTGTAATTCAAAAGAACCAGTAAATTGTCCTGTTAAGATCAAAGAACAGACATAAGCaacaaatgtttgttaataAGGAGGAAAAcatatgaattattcattagCATGTtcaataacaaaacaatacacAGGACCACTATTACTTGCAAAATTATGCTGTCTTATGagtatctttttcattttctgcaatataaagtgtatataaaGCTCTCCTAAAATGGGCTTATTAGCGCCCCtgataaaagtacaaaacataCACAATTTTATAAAAGATTTTCTTACTCCTGGATTTATAAAAGAAGATCACTAGGCTAcattagagttttagttttagcaaaTCACACTGTGCTATCCATACCTTTTAACATTGATAGCCTGTGAAACATTAGCAGAAAACGCGGGGGACACCGCTGAATACCGTAAACTTGCCGTAGCCACTACCACATTCATCGTACACCGTggataaacaaatcaaacatcactgttattaatctttttaactATGTATAGATTGTCAAGAAAAATGATCCTTTTtcatgttaaaattaaaaaaagtaacactgactattgtcaccaagccagcagagggagcccttacctctgggtgatctgcgttcactccctctgctactacttcctcttcctggactataaattcagtagcaggCCACTCGCCTGCTGGTTGCATTGTTCACCTGTTTGGATTGTTGTACTATTGTTGTTTTCCGAGTTTTCTTGTGTTTCCCGAGTCATTGATTCTTTGGTTCTGACCCTGCCTGCCTTCTGatactttgattgtttgctgcctgacccaacctctgcctgtttttggattttgttgttgccttgcctctgatacacCTGTTTGCCTtgatttgacgcctgcctgctttgaccatgcctttgttcaataaaagccaGCGAATGGATCCGCACACCTCAGACCCCTCTTCTGTGACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44383 lncRNA upstream 9680 20645257 ~ 20645535 (+) True G29947
TU44381 lncRNA upstream 23886 20630820 ~ 20631329 (+) True G29945
TU44363 lncRNA upstream 157347 20497097 ~ 20497868 (+) True G29927
XR_006250699.1 lncRNA upstream 192873 20459370 ~ 20462342 (+) True LOC122343178
XR_006250698.1 lncRNA upstream 195021 20459370 ~ 20460194 (+) False LOC122343178
TU44458 lncRNA downstream 107400 20785309 ~ 20785530 (+) True G30005
TU44456 lncRNA downstream 202540 20880449 ~ 20882908 (+) True G30003
TU44493 lncRNA downstream 232245 20910154 ~ 20975778 (+) True G30024
TU44494 lncRNA downstream 234649 20912558 ~ 20934912 (+) True G30025
XR_006250691.1 lncRNA downstream 293601 20971510 ~ 20972249 (+) True LOC122343171
XM_043237404.1 mRNA upstream 10423 20640142 ~ 20644792 (+) False LOC122343085
XM_043237403.1 mRNA upstream 10423 20641611 ~ 20644792 (+) True LOC122343085
XM_043236075.1 mRNA upstream 16604 20633884 ~ 20638611 (+) True LOC122342277
XM_043237273.1 mRNA upstream 96201 20543132 ~ 20559014 (+) True LOC122343005
XM_043236074.1 mRNA upstream 139586 20505411 ~ 20515629 (+) True LOC122342276
XM_043237174.1 mRNA downstream 112266 20790175 ~ 20800541 (+) True LOC122342951
XM_043237448.1 mRNA downstream 224310 20902219 ~ 20906726 (+) True LOC122343111
XM_043237467.1 mRNA downstream 239641 20917550 ~ 20918689 (+) True LOC122343116
XM_043236078.1 mRNA downstream 243526 20921435 ~ 20929163 (+) True LOC122342280
XM_043236079.1 mRNA downstream 340243 21018152 ~ 21020872 (+) True LOC122342283
TU44357 other upstream 286399 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 406986 20248111 ~ 20248229 (+) True LOC122343930
unassigned_transcript_379 other upstream 548088 20107054 ~ 20107127 (+) True trnam-cau_25
unassigned_transcript_377 other upstream 548860 20106282 ~ 20106355 (+) True trnam-cau_24
unassigned_transcript_374 other upstream 550764 20104376 ~ 20104451 (+) True trnam-cau_23
TU44410 other downstream 18763 20696672 ~ 20706846 (+) True G29961
TU44534 other downstream 440653 21118562 ~ 21142831 (+) True G30058
TU44553 other downstream 491340 21169249 ~ 21170595 (+) False LOC122342286
TU44625 other downstream 690734 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 710284 21388193 ~ 21630120 (+) True G30119

Expression Profile