RNA id: XM_043237207.1


Basic Information

Item Value
RNA id XM_043237207.1
length 2872
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC122342966
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 21222570 ~ 21230104 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAAGACTGATCAAACTCCAACTTAAGTCTTCGAGAGATACACAAGACTAGCTCTAAAACGAGTGTTtgtgaggagagagaagagatggACTTCGATCTGAACCAGAGAGCGGCATCTCCAAAGCCCAGCTATGCGAGTGATGCATCCATGGGACAACCCATTTATTTCAGTGCTGaaacagccttgatgagcagtagaagaaagagaaaaagaagagcatCTGCAGGGCACATATATCAGCCTCCTGATCTAAGTGATGGATCAATGACCTTTGAACCCAGAGATTGTCAGACCAGAGACTGGCAGAAGGAATCTTGCCAAAAAGTAGATGATAAACTACAGAGAGTTAAAGACCAACACAAAACTAACATGAAGAATAAGTATGAGAGATTATGTGAGGGATTTAAACTACAAGATAATAAGACCTTCCTAAACAGGATATACACACAGCTCTACATCATAGAGGGAGAAAACGAAGGGgtgaatgaagaacatgaggttttacagatggagaaaacaaaacactcacaagACACCTTGATCAACTGTAATGACATCTTTAAAGCCTCACCTGAACCAGGATGTGAGGAGAAGAAAActaagaagaagagaaagaaaaaccagATTAAGACTGCTCTTACCAAAGGCATCGCTGGAATCGGAAAAaccgtctctgtgcagaagttcattttggactgggcagaaggaaaagccaatcaggatgtggacttcatgtttgtgcttccttttcgagagctgaacttgattAAAGATCATCAGTACAAtcttcacagacttctgctGGACTTTCATCCTGAACTTCATGACGTGGACTCAAAGATTTATGAGGAGTGtaaagttgtgttcatctttgatggtttAGATGAAAGCAGAATCTCACTGATGCTTTCAGAAGCTTCTGAAATTTCTGTGACTAAGACTTCATCAGTAAGTGTGTTGATATCAAAGCTCTTGAAAGGAGAAATacttccctctgctctcatctggatcacctcaagaccagcagcagccaatcagatcccctCAAAATACATCAATCGTGTGACAGAAGTTCAGGGATTCAATGTgcctcagaaggaggaatatttcaggaagagAATCAGTGATGAGCATCAAGCCAGCAGAATCATCTCCCATATCAGAAAATCAAGAAGCctccacatcatgtgccacatccctgtcttctgctggatctcatccaCTGTTCTTCAAAACTTCCTAAAACAAGATATCAGTGCGAATATCCCTCAAAAcctgactgaaatgtacattcacttcctgCTCACTCAAATAAACATGAAGAACCAGAAGTATAAAGAGAGAGATTCAGGAAAACTCCAGGAGTCCAACATAAAAGTGATTGTGAAACTTGCTGAACTGGCCTTCGAACAGCTGATGAAGGGCAATGTTATGTTCTATGAGGAGGACCTGATTGAGAGCGGCATAGATGTCACTGACGCCtcagtgtattctgggatttgCACTGAGATTTTTCGTGAGGAATCTGTGATTCACCAGAAGAAAGTCTACTGCTTCATTCATCTGAGCTTTCAAGAATTTCTGGCTGCTTTCTATGTGTTTTACTcacatctgtttaaaaaaatggaaccGCTGAAgttgtttctgaatgacagacTTGAGATGTACAGATCTGGAAAAAGCCCTTTGTGTGAGCTGCTAAAGTCAGCAGTTAAAAAAACGTGTCAAAGTAAAAACGGACACCTAGATCTTTTTTTGCGGTTCCTGCTGGGAATTTCGctggagaacaatcagagaGTCTTACAGGCTCTTTTGACATGCACAGAGAATAGCTCCAAcaccatcaaaataataaaaaaacacattaaaaacataatcaaGAGAAATGATCGTCTTTCAGCTGAACGATCTATCAATCTTTTCTACTGTCTGCTGGAAGTTAAAGATCAGACTCTTTACAGAGAGATTCAGCGTTTTGTGAAATCAGACAAACACTCAGAGAAGAAACTGACTCTCGGTCACTGTTCAGCCATTGCCTGGATGCTTCAGATGTCAGAGAAGATGCTGGATGAGTTTGATctcacaaaatataatacatcatCCGAGGGAAAACAGAGACTGTTGCCTGCTGTGataaactgcaaaaaagctGTACTTGCTGGATGTGGTCTCTCTTATCGGCACTATGAAAGTTTGTCTTCTGCTCTACAATCATCAGACTCCCatctgagagagctggatctgagtaacaatgatctgcaggattcaggagtgaagctgctctctgctgCACTGAAAAGTTCAAACTGTCAAGTGAACATACTGagatTGGTCAGCTGTAATCTCACTGGTCAGTGCtgtgaaagtttgtcttcagttctACAGTCATCAAAAACCCatctgagagagctggatctaagtaacaatgacctgcaggattcaggattAAAGCTGCTCTTGGCTGGACTGAAATGTTCAAAGATTCGACTGAGCATACTGAGGCtgtctggctgtatggtgacagagaaaggctgttgttatttgtcttcagctctAAGTTCAAACTCTctacacctgagagagctggatctgagctacaatcatcctggagattcaggagtcaagctgctctctgaaaaactgaaGGATCCAAACTGCACACTGGAAAAACTCAAATTCCCATTTTCTCACACTGaatccaaacacagcaaaccCTCTTCTCATTCTATCTGAAAGGAACAGAAAGGTGACACGTGTGAATAAAGAACAGTCATATACTGATCATCCAGAAAGATTTGATCTATGTTATCAGGTTCTATGTAGAGAACGTCTTTCTGGGCGCTGTTACTGGGAAGCTGAATGGAGGGGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250681.1 lncRNA upstream 55328 21163756 ~ 21167242 (+) True LOC122343163
XR_006250727.1 lncRNA upstream 88968 21131154 ~ 21133602 (+) True LOC122343205
XR_006250684.1 lncRNA upstream 96150 21126085 ~ 21126420 (+) True LOC122343166
TU44529 lncRNA upstream 104048 21117661 ~ 21118522 (+) True G30056
XR_006250691.1 lncRNA upstream 250321 20971510 ~ 20972249 (+) True LOC122343171
TU44570 lncRNA downstream 19730 21248187 ~ 21248425 (+) True G30077
TU44588 lncRNA downstream 47653 21276110 ~ 21301007 (+) True G30090
TU44580 lncRNA downstream 83098 21311555 ~ 21337024 (+) True G30085
TU44614 lncRNA downstream 104788 21333245 ~ 21721910 (+) True G30104
TU44624 lncRNA downstream 140965 21369422 ~ 21374537 (+) True G30110
XM_043237243.1 mRNA upstream 36435 21182237 ~ 21186135 (+) True LOC122342986
XM_043236084.1 mRNA upstream 39809 21177555 ~ 21182761 (+) True LOC122342287
XM_043236083.1 mRNA upstream 48230 21169193 ~ 21174340 (+) True LOC122342286
XM_043236082.1 mRNA upstream 54609 21167249 ~ 21167961 (+) True LOC122342285
XM_043237396.1 mRNA upstream 61545 21156080 ~ 21161025 (+) False LOC122343080
XM_043236086.1 mRNA downstream 63855 21292312 ~ 21305636 (+) True LOC122342289
XM_043237468.1 mRNA downstream 149081 21377538 ~ 21379639 (+) True LOC122343117
XM_043236090.1 mRNA downstream 170360 21398817 ~ 21400148 (+) True LOC122342293
XM_043236091.1 mRNA downstream 218783 21447240 ~ 21449510 (+) True LOC122342295
XM_043237315.1 mRNA downstream 221060 21449517 ~ 21452862 (+) True LOC122343031
TU44553 other upstream 51975 21169249 ~ 21170595 (+) False LOC122342286
TU44534 other upstream 79739 21118562 ~ 21142831 (+) True G30058
TU44410 other upstream 515724 20696672 ~ 20706846 (+) True G29961
TU44357 other upstream 853754 20367675 ~ 20368816 (+) True G29921
XR_006250910.1 other upstream 974341 20248111 ~ 20248229 (+) True LOC122343930
TU44625 other downstream 140186 21368643 ~ 21761178 (+) False LOC122342301
TU44637 other downstream 159736 21388193 ~ 21630120 (+) True G30119
TU44630 other downstream 411083 21639540 ~ 21641756 (+) True G30115
TU44767 other downstream 1003013 22231470 ~ 22231924 (+) True G30218
TU44785 other downstream 1068440 22296897 ~ 22301519 (+) False LOC122342310

Expression Profile