RNA id: XM_043237210.1


Basic Information

Item Value
RNA id XM_043237210.1
length 4359
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC122342969
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20591115 ~ 20615223 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGCGTTGATATAAATTCTGAAACAGGTGCGAGTGTAAATGCTCCTCTATTGACTGCGAACACCTTCACAGGACCAGTAACAATTTATGGCTCAAATGCTGAAGGAAACGATAAACAGAAATCCTCAGAGATGCCAGAggaacacagagaaaaacaagagctGCAAAGCTTTTTTGAaactcatgaaaaaaaaatgaagaagaaaacagaatttatgtTTGAGGGCAACGAAGACAAGGAAGCACAACTCAAGGCTGTTTACACAGAACTGTTCATCACAGAGGGAGATATGAAAGATGTCAATCACGAACATGAGATTCTGAAGATCGATGATGCCTTcaagagcaaaaaaacacagaacaaaccaatcaaatgtaatgatatatttactgaactgagaaaaaacaatgagaaaaaGATTGTTCTGACTAAAGGAGttgctggcattggaaaaactgtctctgtgcacaagttcatcctggactgggctGAAGGAAAGGCCAATCAAGATATACACTGTGTGTTCCTGCTTTCATTCAGAGAGATTAACTTAATGAAAAATGAAGATTTCAGTCTCCACAAGCTTCTGCTGGAATTTTATCCTGAACTGAAGGACCTGGGGGGAAAAAGGCTATATACGGAATGTAAgatagcatttatatttgatggacttgatgagAGTCGCCTGTCtctaaattttaaaagtagatcACTGAACACTGTTGAGGAAAGTGCATCTGTAGATGTGATTTTTACAAGTCTGGTCAAAGGAACTTTGCTTCCATTAGCTCTTGTCTGGGTGACATcacgaccagcagcagccaatcagatccctccTCAGTATGTGGGGTTGTTCACAGAGGTGCGAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGTAAGAGATTCACAGATGAGAGTCTATcctccagaatcatctcacacattaagacgtctcgtagtctctacatcatgtgccacatccctgtgttctgctggatcacagCCACAGTACTTCAGGATATTCTAACAGAGAACAATGAAGAAAACATCAACACAACactcactgaaatgtacattcacttcctgCTTATACAGATGAACATGAAGAACCAGAAATACAATGAACAAGAAGAAAGAGAATGTACAGAGcacttacaattaaataaagagaTGATTTTAAAGTTAGCTAAGTTAGCATTTGATCAACTAAAGaaggaaaacattgtgttctatAAGGAAGATCTAAAAGATTGTGGTATTGATGAGAGTAAAGACACTGAGTTCACAGGAATGATCGCTGAGATCTTCAGAAGAGAACACAGACTTCATGGAGCAAAGGTCTTCTGCTTTGTGCATCTGAGTGTTCAAGAGTTTCTTGCTGCAGTCCATGTGTTCATCTGTTACCTGAACAAGAACATGCAGGagcttcagtttttctttgatgagccaaaagaaaatgtcacattGCAGGAGCTCCTGCAGAAGGCCATTGATAAAGCCAAAGAGAGTCAGAGAGGGCATCTGGATCTGTTTCTGCGGTTTCTGATGGGCATTTCATTGAAATCCAATCAAATCCTGCTGAAAGGCCTGATCACACACCCTGAAAACACTACAGAGggcatcacaaaaataactaaatacatcaaacaagaacaaaacaattACCATATCTCAAATGAAGCTCTAGTCAACCTGTTCTACTGCTTACTTGAACTCAAGGATCATTCATTATTTGAGGAAATACAGAGTTACCTCAGTTCAACTGAACATCCAAGAAGAGATCTCTCATCTTCAATGTGCACAGTGCTGACCTACATACTGCTGATATCAGAGAAGGTGCTGGATGAGTTCAACCCAAAGAGGTTCACATCAGAACAATCAAACTACAAGAGACTCCTTCCAGCtgtgagatgctgcagaaaagctctATACAACGGCTgtggttttgatgaaacatgctgtgaaaCTCTGTCTTCTGCTCTACAATCATCAAACCATCTGACAGAGTTGAATCTATGTAACAatcacctgcaggattcaggagtgaagctgcttaATGAAGGACTGAAGAATGCACACTGTCGACTGAACATACTGAGGTTGTGTGGCTGTAATCTCACTGCTCAGTCCTGTGAAAGTTTATCATTAGctctacaatcatcaaactctgtcctgagagAACTGGACATGAGTTACAATGACCTGAAGGATtctggagtgaagctgctttctgaaggactgaaaaGTCCAAAGTCTAGGCTGGAGATATTGAGATTGTCCATATGTAATCTCACTGCTCAGTCTTGTGGGAGTTTATCATCAGTTTTACAAtcatcaaactctgtcctgaaaaagctggacctgagtaacaatgacctgcaggattcagggttgaagctgctttctgaaggactgaagagtccaaactctaATCTGGAGATACTGAGgttgtctggctgtatggtgacagaggaaggctgtaATTATTTGccttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcacccaggagattcaggagtcaggctgctctctgaaaaattGGAGGATCCAAACTGTTCACTGAGCAAACTCAATGTTGATCATGGAGGAGAAtccaggattacagcaggactCAAGAAATatgagtgttttctcacactggatccaaacacagcaaacaatcATCTCAAACTGTCTAAGGACAACAGAGAGGTGACACGTGTGTTTAACCATCAGTCGTATCCTTATCATCCGGACAGATTTGATCGTGTGTATCAGGTGTTGTGTCGAGAGAGTTTGTTTGGACGTTGTTACTGGGAGATTGAGTGGTGTGGATTTGATGAAGATAGTGTGtctatatcagtgtcatataagagcATCAGCAGGACAAATGGTGATATGTGCGTGTTTGGACgcaatgatcagtcctggagtttgatctGCTCTCCTGACAGATACTCATACAGACGCAACAGAGACACTGATCTCCATGTGAAGCCCATCATTAGCAGAAGAACGGGAGTGTTTGATAATATCAGAAGAACAGGAGTGTATTGTAATATCTctagagtaggagtgtatgtggatgagagcgcaggaactctgtcctttttcagcgtctctgacacaatgagactcatccacacagtccagaccacattcactcagacactctgtcCTGGGTTTGGTGTTTATTATTCCggatcatcagtgaaactgtgttgatgaatcagaagagactgagCAGAGATTCTACCCAGAatgctttgagctgcatgaAGAATCAGTAACAATGAGATTTAGCTGATGCttatatacaaagaaaaaatactttaatacttatattaattattaatattataaaatatcatgAAAGTCAGAAACATAGTATCATAAAATATTTCCCAAGATTAATCAAATTTGCTGAACAGAAAAGTTCCTTAAAGTGTGCTGATTTCTGCACTCAGTACTTGGTTGGGGCTTCTTCAGCAAAAAGATCAGTCTGTGGCTGATGGTCATTTAATCAAACTCAAATGTCAGTATTAAGTTGGGTGTACACAGTGGGATACTGAGGGTTTGAGTTTCACGCTTGAGTTTAATCTGAAAATTTTATAACAGCAGTCACACATGACACAAATTTAAACTGacaaaatctgatttttttttaattatcggAAGATCGGGAAGTGCTCATAATGTTGTGGGATCGGCAggaaaagtcatttaaaaaatgttaccgTGAACGCCCGCCTTTATAGTATTTTGATATACTGGattttgactttcatgagctgtaagctctaatcatcaaaaaaaaaaaaccttttgaaatgttttactttatatgtAATGGAtctagaatatatatttaaaaaagatgcatttccTGTTTGGAGGCCTTTATAAACAGACACTTTCCATGAGTAGgatgcaaagtattgccagttctACTGCCTTACCAAGCATTCTATATCATTGTTCTGTTTATCTGCCACGGACATGGATTCTACTTCGGCTTCCACATCCTCATTACAATGAActatgtgtttatttaacaaaattctGCATGAAATGTCTAGCTGATGCTAAAAGAAGAACTTCATTAAATGCTTCAAAGATTAATTTGTTATGCACATTACATTTGGGAGGAAAAACTAAAGCCGTGGCCATGGTGTGgaataacatgctttttttaataaacacaagGTGCATAGCTGCATTGACTGCTGCATTGAATGCTCTCTTGGCTGTGGTTGTTTCCTATCATCCTTCAACAGCCATTCTGTCGAGAATTTGCCCAAGAGTTCTCAGCAGTACAGAAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44823 lncRNA downstream 75998 20514817 ~ 20515117 (-) True G30258
TU44819 lncRNA downstream 122319 20468506 ~ 20468796 (-) True G30254
TU44793 lncRNA downstream 144791 20327906 ~ 20446324 (-) True G30240
TU44835 lncRNA upstream 17012 20632235 ~ 20632507 (-) True G30270
TU44837 lncRNA upstream 29741 20644964 ~ 20645535 (-) True G30272
TU44838 lncRNA upstream 34883 20650106 ~ 20650832 (-) True G30273
TU44858 lncRNA upstream 61037 20676260 ~ 20677864 (-) True G30286
TU44867 lncRNA upstream 120923 20736146 ~ 20737160 (-) True G30293
XM_043237176.1 mRNA downstream 10607 20568381 ~ 20580508 (-) False LOC122342952
XM_043237177.1 mRNA downstream 10635 20568381 ~ 20580480 (-) False LOC122342952
XM_043237178.1 mRNA downstream 12255 20568379 ~ 20578860 (-) False LOC122342952
XM_043237449.1 mRNA downstream 257834 20330447 ~ 20333281 (-) True LOC122343112
XM_043237276.1 mRNA downstream 321209 20266961 ~ 20269906 (-) True LOC122343007
XM_043237181.1 mRNA upstream 64867 20680090 ~ 20690873 (-) True LOC122342955
XM_043237187.1 mRNA upstream 77739 20692962 ~ 20716250 (-) False LOC122342956
XM_043237185.1 mRNA upstream 77740 20692963 ~ 20716250 (-) False LOC122342956
XM_043237188.1 mRNA upstream 77740 20692963 ~ 20716232 (-) False LOC122342956
XM_043237189.1 mRNA upstream 77740 20692963 ~ 20716190 (-) False LOC122342956
TU44338 other downstream 308715 20281106 ~ 20282400 (-) True G29906
TU44333 other downstream 352561 20237137 ~ 20238554 (-) True G29902
unassigned_transcript_385 other downstream 374876 20216160 ~ 20216239 (-) True trnal-aag_28
unassigned_transcript_384 other downstream 376783 20214249 ~ 20214332 (-) True trnal-aag_27
unassigned_transcript_383 other downstream 377793 20213241 ~ 20213322 (-) True trnal-cag_25
TU44972 other upstream 712493 21327716 ~ 21330093 (-) True LOC122343135
TU45006 other upstream 768246 21383469 ~ 21386437 (-) True G30395
TU45009 other upstream 768246 21383469 ~ 21385978 (-) False G30395
TU45011 other upstream 1014394 21629617 ~ 21776806 (-) True G30396
TU44977 other upstream 1121868 21737091 ~ 21740330 (-) True G30372

Expression Profile