RNA id: XM_043237213.1


Basic Information

Item Value
RNA id XM_043237213.1
length 3220
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC122342974
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18908916 ~ 18915022 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAGTATTGGTTCCATTCTTTGTCTGAATTTGTGCCTGTATGATCGTGTTCAGGTTAAGCTGTCATGGATACTGGCAAGACTTTCCTCACTATCCTTTATCTGCTTCTATACAGCTGTTCAGGCACAGCTGAAATTGATGTCTCCCAAATCAATAAAGTGGAAAAGGGCATGTCAGCCACTAAAGAATTTCTCCAAAGTCTCAGTGAAGTTTTTAAAAACGAGGGGAGAGACACAGCTCGTGACCCACCCACAAAAGTCGTaaaagtctttggttcttttggCAAAGTTGCAGTAAGTTTTGGCTTTATCAAGTCTTCAATTAACTTCATCTTTGCATTCACTCCACAATCGGATCCAACACTGCAGTTCATGCAGGAACAGTTTGCTGGGGTCAACAGTAAactcaactctctctctcttcaagtTTCCACCCTGCGAACAGAAATGAAATGGACCGACTACGCAAGCAGCTATGCCAAAGACGAGAATGTGATCAAGAACTCCTGGGCTAAGTTAACCGAGTTTATACAGACTGCTCCTTTGGCTTCCACGCAAGAACAGAAGACCAGGCTGGCTGAGAGTTTCACCACTTTCTATAAAAACACTGGCACAGACAAGAGTGTTGCTAATTTATACCGATACATCACTGAGAACAATAACGTCAGGTTGAATAAGAATCTTTTAAAGCTCATTATCAAGAAATCCAATGGTAATTTTAATGTTCTGGTGCAATACTCTGCCTACTTCACCACTCTGATGGTTTCAGGGctgaatttaaatgtgttttataacaAATTAAAGGGCTGTGATGATGAAGTAAAGGTACAAGAAGCAGTCAAAGAACTGTCCAACACTTTATCAGCCATACAGGATGCCTTGATTGAGTGTGCCGATGACTTTGAGAAGTGGGCTCACAAGGATGCTGTGAAACTTAGCAATCAACGATTCTCAAGTAGAGGAAAGCTAGCTTCAGATATTAAGCATCATTTGGAGAGAAAATTCCACTGGTTCAAATGGATAGTGATTGCCCACCcaaaaaatgctcaaaaagAGTTTACGTTTGGAAAGTcaatttacattaatgttaaaaaaaagacgTTTGTTCACGTAATTCATAAAGAAAAGGCTTCTACTGTTGATCAAAACATTAAGAACAATGTTACATCCAGTTTGCAAAAAGAATTATTAAATCAGATCAATACTCGGAAGTGTGCAACAATAAAAGATGAGCTGCTCCGCAGGCTTGGTGCTAAAGTTACCCGCCACATACTGTTTCTTCATGCTGTTACAAAACCCTCAGGCTATGCTCAAACAGATGTGCCAGATATTAAGCTAAGCTGTCACATAGCAGGACACCCTAACAACTCTCCCAGAGACTTTAATATCTACCTTCAAGGAAATACTGTGGTGAAAACTCCTTGTTCAGATGTGAATTGCAACCATGGAGAATGTAAACACATCAAGGACACCACACAAGTGTTCTGCAAGTGCTATAAGATGTTCCATGGTCCAGCTTGTAAGGAAAGCATTCAGAATATTATTAACTATGCAGTTTTGGAAGGTGAAATCAACAGTGTGATCTATAAACCTGTCCCTGGTCTAACAAAAATTTACTCGAGTGTCCAGGAGCTGAAGAAATACACTGAAGAGATACTTGGGTCTGTTAGAAATGACGTCCAGTGGACACAAACCATTGTCAAATACAGCAATGTGATTCAGAAGTTTCACTTCATCAACATATTACATTCACGACTTAAGAAAAGTGCAATAACCCAATGCCACTATGTTTCTGAATTTAAAGCTCAGTTCACAGAAGGAGGACACTCATTTAAGTTTTATCTCACTGAATTCCACAACATGATGATGGGCACTGGGGTTggagacaaacaaaacattctggATATATTTCGCAACTCGCTTGTTCACAACTCCCAGAAACAGTCTGGTGAGCCAGTAGAGTGCACACAATACTACACTGACCAGATTGATTATTTTGTTCGCTACATATTTGCCCTAGAAAAGGAAGCTGTTTTAGCTTGGTCAAAATTTCTGCTGGTCACTGGAAAATCAAAGAACATTGTAGAGAAGGTTTTTAAGGACTATGTTTCACAGCAGTGGAGACTCTTCAATAAAAACGGATGTGGCCCTCTAAATGCTGCGGATCTTCAGAACAACCATTGCAAGGAGTTGTACCATAGCACAGCCCAGCAGCAAGTCAGAATTAAATGTGGTGGATTGCTGAAGCCTTTCCCACAAACCGTGGGGTGCTCTGGAGGGCAGTGGAGTGCCTTGCCTGCCTGCTACGCTGAGCAGGAAAATGGGAGAGTTGAGTGCAGATCTGAAGGTAGAGCCACCGTCTGTAAGGCCTCATGCTCGCCTGGCTGGGGCTCCGCCACACACCCTCAACCTGCTGAGTATAAATGCTCACAGCAACCTTGTCCATCCTTCACACCACACATGTGTAACAACTGCATGCAAGACTTTGTTTGTAAGGCCCATGAGgtctgcactggctcctatggCACATGTCGTGAAACGTGCCTGGTTAGACCCTGTGGAGTAAATGCCAGATGCTTCTCCTACAATCATGCCAGGAGCTGCACCTGTGTGAGCCCGTGGAAAGGAGACCCTTACCAGGGCTGCAGAAGTCAAGACCTCCAGTGGGTTAATACCAGAGGAGTACCATGGAATGCTGTTCGATCTCCAACCCAAGTAGTAGTGTGCAAAGCCATTGGACCTGACGGAGGGTGGCACAGTGGGTTTGTAAGGAATCAGCTCTGCATCTATGAATATAACTGGGGAGAGCATCATGCCAGAAACTATGAGGTTCTTGTTGATCCATGTGGAGGACGTGGTTGGAGATGGATGCTGGGGGCACAGGGGAACATGCTCTCGTATGACGAATCGAAAAGGTTTCCTGGAGTCAAATACTACGTTTGTAGTGCAACACACGATGGCCGCGTAGGGAAGCTTTTCAACACTTATCTTGGCTTTCTGTGCCATATTGCCAGGGGCACAGCTAACAGGGATAGAAGTTTCTATTCTCTGGTTACACAACCATGTTTTTGAAGTCACTTCACCGATTTGCTATTCAGTGCTTAAGCACCTCCAGTTCCTTTTTCAAGCTTTGCAGTAGTGGAAATGAACCTGAATGAATGGAGACTATATTTCTATTCTTCACAGCCttgcttttgtttgcattaaaattttttaaacatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250682.1 lncRNA upstream 1092 18903235 ~ 18907824 (+) True LOC122343164
TU43902 lncRNA upstream 93638 18814883 ~ 18815278 (+) True G29633
TU43888 lncRNA upstream 123670 18785045 ~ 18785246 (+) True G29627
TU43851 lncRNA upstream 243833 18662860 ~ 18665083 (+) True G29600
TU43831 lncRNA upstream 305600 18600428 ~ 18603316 (+) True G29591
TU44148 lncRNA downstream 17297 18932319 ~ 18932690 (+) True G29777
TU44169 lncRNA downstream 52365 18967387 ~ 18967714 (+) True G29797
TU44175 lncRNA downstream 130688 19045710 ~ 19053414 (+) True G29803
TU44189 lncRNA downstream 164746 19079768 ~ 19080189 (+) True G29809
XR_006250695.1 lncRNA downstream 454749 19369771 ~ 19371889 (+) True LOC122343175
XM_043237394.1 mRNA upstream 11126 18894901 ~ 18897790 (+) True LOC122343078
XM_043237361.1 mRNA upstream 39133 18865853 ~ 18869783 (+) True LOC122343055
XM_043237200.1 mRNA upstream 76323 18823925 ~ 18832593 (+) True LOC122342961
XM_043237281.1 mRNA upstream 94322 18810860 ~ 18814594 (+) True LOC122343011
XM_043237280.1 mRNA upstream 94322 18810860 ~ 18814594 (+) False LOC122343011
XM_043237355.1 mRNA downstream 3578 18918600 ~ 18922510 (+) False LOC122343048
XM_043237353.1 mRNA downstream 3622 18918644 ~ 18922510 (+) True LOC122343048
XM_043237354.1 mRNA downstream 3622 18918644 ~ 18922510 (+) False LOC122343048
XM_043237417.1 mRNA downstream 18685 18933707 ~ 18937665 (+) True LOC122343092
XM_043237335.1 mRNA downstream 35705 18950727 ~ 18953599 (+) False LOC122343037
TU43926 other upstream 22514 18883179 ~ 18886402 (+) True G29642
TU43756 other upstream 447599 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 607727 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2434535 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2923190 15985219 ~ 15985726 (+) True G28899
TU44195 other downstream 375198 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 816240 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 830719 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 1122916 20037938 ~ 20040195 (+) False LOC122343063
unassigned_transcript_309 other downstream 1147632 20062654 ~ 20062727 (+) True trnam-cau_2

Expression Profile