RNA id: XM_043237215.1


Basic Information

Item Value
RNA id XM_043237215.1
length 3953
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC122342975
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18843947 ~ 18852626 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtTTACAGTCGATGTCTCAATATCAAATAGAATTAGGGTGCTTCTCAATATCCATCCTCGTTTCCTCGCTCCTTCGAGACGAGCTCAGAGCTCAATTCCTCAATTGCACCGAGCGAACTTTTGGCTCAACCGACTTCCATTCATACGCATGCGGAAAAGACAGACCGGAAACCCAAGTTGCGCTGCTTTCCAAAGTTTTGTGAACTCTGACATCGCGCGACTGCCAGTTTATCCACGGCGCGCGCGCTTTCCGTCTTCACGCGGTGACTTACGTCCGGCAGAAATGGAAGAGGCGCTAATTTTGTGTcagtttatgtttgtttacttttttgtttgacATAAAATTGTTTACACGTCGTGGCCGAAGGGAGACATGGCTCTTGGTGTCATATCCTGCAGCCCGTCCATATCTGTATAATGTGAGAACGTTATGCTGCTGGACCGCTCACTTTGATATTTTTGGGACTGTTTTGCAAACTTTTGTTCAACTTGTCGCTTTTTGAAATCCATACTTTCAACTCGACACTCATGGGGAACAAAGAAATCGATGCAGGTTTGGAActgggGGTGGACACATTAATCTTAGGAAAAGCAAGGAAGAAAACCTGCCACCAGCTTACTTAAGTGGTTGGAAAAATCTTTTGTCCTGATTAAGGGGATGGCCTTTTCTGAAATGGGCAGATTTGCCAACATGACAGGGTGGACAACAATTCAAGGGACATGGACATTCTTCTTTTTGAAATATGTGAGTCAGTGACAGTATAATCTGTTGAAGAGCTTTATGACAAACTAGATGAGCCAGAAGAAAGCAGAAACTAAAGGAAGTCAAGATGAGCAACACCACTCAAACTAAAGTCAACGTTGATCAGAAAGCGGAGAAAGGAGGAATTTTAAATGGTCCTATACTCACTGAAAACACTATAGAATCAGTTACTATCAACTTCATCACTGCAGAGCCACAAAAATCCCAAGACACAGTGAAACAGACAGGAGATCAAGCTGCAAAGGACCCTGGAACTTCTCTTCCTGATTACACAAAGATCAGCCTAAGACTGAAGGAGAAATTAAAACAGGACTACCAACGGATATTGATTGGTAATTCACAAAAGGGTCATCGACAGAACCTGAACGATATATATACTGATCTATATGTGCTGGAGAATGAGACTGGAGGAATAGAGAGTGAGCATGAGGTGATACAGATCGAATCGAGTCGCAACCGGCTTATTATTGACACACCAATCAAATGCAATGATTTATTCAAAGTTCGGAGTGATAggaatcagcaaaaaaaaagagtgatgaCAATGGGCATTGCAGGGGTGGGAAAGACTGTCTCCGTCAATAAATTCATCCTTGACTGGGCTGAAGGAGAAGAAAATCAGGATATAGTCTTCATTTTTCCACTCCCATTCCGTAGACTGAATTTGATCAAAGAAGAACAGTTCAGCCTCATAGGACTGCTTAACAAATACTTCTTTAGTAGTCCTGAAGAACTGCCTTCTCTTCCTGAAGGTGATGGAAAAGTCATGTTCATCTTCGATGGTCTGGATGAATGTCGCTTCCCTTTAAGCTTTGAAGAGGATAACAGCATTAaagatgtaaatgaaaaaacaacagtgAGTATTATAATAACAAGCTTGATCAAAAAAGATCTGGTTTCctctctcatctggatcacctccagaccagcagcagccagtcTGATATCCCGAAACTACATTGATCAGGTGACAGAAGTGCGAGGATTTAACGATGAGCAGAAAGAGcaatatttcaacaaaaacagcagTCCTGAAGTTGCTGGAAACATCATCCGTCACATCAGGAAATTCAGGAGCCTgtacatcatgtgccacatccccgtcttctgctggatctcccTCACAGTTCTTCGGCCTCTGCTGGGTCAAAAGAGCAATGAAAAAACACCTACAACACTCACAGGGATGTACACAAACTTTGTAATTTCTCAGATGCAgcagatgaaaaacaaatacagtgatGATCCTGAATCTAAGACTGAATCTGTAATTTTGAAGCTTGGGAAACTGGCCTTTCATATGCTGATGGAAGGAAAACTGAGTTTCTACAAAACAGATCTTGAGAAATATGGAATAGATGTCACTAAAGGGTCAGTGTTCACCGGGTTATGCACTGAGATCTTTCAAGAAGAAAAAGCGTTTTTAGAAACAAGTATTTACAGCTTTATACATCTCAGTGTCCAGGAATTTCTTGCTGCTCTTTATTCAACTTTGACTGACAAAAAGGAGAAAGTAAACATCTTTTTTAAATCCTGGACAGAAAAACTGATATGGAAACTCTCTAGAAAGCCACTGTTTCTAATTCATAAGGCTGCAGtcataaaggctttaaaaagTGAGAATGGACACCTTGATCTTTTCCTTCGATTCCTGCTGGGTCTCTCAATGGAGTCCAATCTGAGTGACATAAAGGAACTACTGCCAGGACTAGAGCTCAAATCAGAGAACATGAAAGATTCTGCTGactatataaaaaagaaaatacagaaggagaaatcagtgGAAAGAACCATCAATCTCCTATACTGTTTGACTGAAATGAAGGTTGACACTGTTGAGGAAATACAAAGGTATCTGAGCTTGGGAGAACTTTCAGTACAGAGTCTCTCCTCTGTTCAGTGGTCTGCTCTGGTTTTCGTGCTCATGATGTCAGAAGAGGCTCAAGAAAAATTTGAACTGCAGAAATACAGAAGATATGATGAAGCAGTGATGAGATTGTTGCCTGTGATCAAAAACACCAAAAGAGCACTGCTGCATAACTGTAATCTCACTGCTCATTGTTGTAAGAGTTTGTCTTCAGTTCTAAAATCCTCAGTTTctgtcctgagagagctggacctgaccAACAATGACCTAGGGGATTCTGGAGTGAAGCTTCTTTGTGATGGACTGAGGAGCACAGACTGTAAGCTGGAGATTCTGAGgttgtctggctgtatggtgacagaagaaggctgtggttatgtgttttcagctctgagttcaaaccccctttacctgagagagctggatctaaGCTACAATTacccaggagattcaggagtcaagatgctctctgaaaaactagAGGATCCAAACTACAAACTGGATAAACTCAAtgtgGATCATGGAGGAGAGTCCATGATTACAGCTGGATTAAAGAAATATGCCTGTTCTCTCaaactggatccaaacacagcgcACACTGACCTTGTTCTCTCTGAAGATTACAGAAAAGTGAGAAATATGAGAGAGAAAGCGGTAAATCTGGCGCATGCTGATCATCTAGACAGATTTCAGCATGCATATCAGGTGTTGTGTAAAgagaacataaaaacaaatgaacgctgttactgggagattGAGTGGAGTGGACCTGATGGTGTGCGggtatcagtgtcatataagagcATCAACAGGAAGGGACACGGTGTTCAGTCTGAGTTTGGATCAAATGCCGAGTCCTGGAGTTTGTTCTGCTCTTCTGACAGATACTTATTTAGACACAATGACAAATATATCGATCTCCCTGTAGATTCCATTAGCAGTAATAGaataggagtgtatgtggatcaCAGcacaggaactctgtccttctacagcgtctctgaAAAAATAAGACTCATCCACACaatccagaccacattcactgaGGATCTCTATCCTGGGTTTACTGTTTATCCTGGGTCTCAAGATGGATATGAATCATCAGTGAAGCTGTTGATGAATCAGACTGACTAGAGTTTCTACCCACGATGAGCTGCACGATAAATCAGTAACAGTGAAAATGTTATAAACAGGgaggaggtccagcatctggccacatggtgcaaagacaataatctgctccttaacactaccaaaaccaaggagctcattgtggacttcaggaaggtgagaagagtaTGTGCtcttgtaatttatatttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44101 lncRNA downstream 37279 18800904 ~ 18806668 (-) True G29741
TU44098 lncRNA downstream 57255 18786196 ~ 18786692 (-) True G29738
TU44096 lncRNA downstream 60032 18783605 ~ 18783915 (-) True G29736
TU44083 lncRNA downstream 96639 18744601 ~ 18747308 (-) True G29726
XR_006250719.1 lncRNA downstream 103166 18737815 ~ 18740781 (-) True LOC122343197
TU44114 lncRNA upstream 4848 18857474 ~ 18857721 (-) True G29753
XR_006250724.1 lncRNA upstream 5261 18857887 ~ 18861170 (-) True LOC122343202
XR_006250707.1 lncRNA upstream 103592 18956218 ~ 18958048 (-) True LOC122343185
TU44168 lncRNA upstream 114150 18966776 ~ 18967064 (-) True G29796
TU44183 lncRNA upstream 193191 19045817 ~ 19053531 (-) True G29806
XM_043237235.1 mRNA downstream 3231 18836618 ~ 18840716 (-) True LOC122342979
XM_043237165.1 mRNA downstream 108349 18693002 ~ 18735598 (-) False LOC122342944
XM_043237162.1 mRNA downstream 108350 18693002 ~ 18735597 (-) False LOC122342944
XM_043237164.1 mRNA downstream 108350 18693002 ~ 18735597 (-) False LOC122342944
XM_043237167.1 mRNA downstream 108350 18693002 ~ 18735597 (-) False LOC122342944
XM_043237400.1 mRNA upstream 46181 18898807 ~ 18902552 (-) False LOC122343082
XM_043237399.1 mRNA upstream 46181 18898807 ~ 18902498 (-) True LOC122343082
XM_043237486.1 mRNA upstream 63700 18916326 ~ 18917533 (-) False LOC122343130
XM_043237328.1 mRNA upstream 70637 18923263 ~ 18927380 (-) True LOC122343034
XM_043236047.1 mRNA upstream 114635 18967261 ~ 18970537 (-) True LOC122342237
TU44045 other downstream 108307 18724825 ~ 18735640 (-) False LOC122342944
XR_006250671.1 other downstream 182294 18656980 ~ 18661653 (-) True LOC122343054
XR_006250670.1 other downstream 182298 18656980 ~ 18661649 (-) False LOC122343054
TU43941 other downstream 415604 18408560 ~ 18428343 (-) True G29653
TU43653 other downstream 864025 17970605 ~ 17979922 (-) True G29473
TU44133 other upstream 47939 18900565 ~ 18902548 (-) False LOC122343082
XR_006250672.1 other upstream 63700 18916326 ~ 18917533 (-) True LOC122343130
TU44159 other upstream 78910 18931536 ~ 18931875 (-) True G29787
unassigned_transcript_306 other upstream 1207963 20060589 ~ 20060671 (-) True trnal-aag
unassigned_transcript_307 other upstream 1208726 20061352 ~ 20061432 (-) True trnal-cag

Expression Profile