RNA id: XM_043237231.1


Basic Information

Item Value
RNA id XM_043237231.1
length 3346
RNA type mRNA
GC content 0.53
exon number 18
gene id trim24
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18556569 ~ 18565366 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTTGTCCCAACTCGGCCGCCGTCGCACCGCGTCACAACGGAGGCCGCGCGACGTCACGTTCCCGGCCCCCGTCGTCACACGCTTCTGGCAACAACAAACACGGCGGTCCGTTTCGCTTTTGAACTTCATCGGCGGTCGACTCTCCGCGCCTCGCTTGCCGCGACGCCTCACTCGGACGTCCGCCGGGCCCCGCGGCACGGCAAGCGAATCGACGTCCCCGCCGCGATGCCTCCGCTGACGCTCTCCTCGCGCTAAAGTGATGGAGGGGGGCGAGAAGATGGAGTCCGACGATGTGGTGATCGTCGTGGAGAACGAGGCGGAAAGCAAGCGCGCCGACGAGGCCCGGGGCGGCGCGAGGATGATGGCGGCGGCTCTGATGGACGTGTGCCCCGTGTGCAAGCTCAGCTTCAGCAGCAGAGAGCCCAAGCTGCTGCCCTGCCTGCACTCCTTCTGCAAGCGGTGCTTACCCGCTCACAACGCGCCCGCCGGCGCCGCCAGCAAcgcgcagcagcagcagcagcTGAACATGATCCGCTGTCCAGTCTGTCAGCAGGAGTGCATGGACGTCGAGGTCTTGGATAATTTCTTCGTCAAGGATTCCGTGGAAGTGCCGAGCAGCACGATGGAGAAAAGCTGTCAGCTCTGCATGAGTTGCGACGATAACACCGAGGCCAGCGGCTTCTGCGTGGAGTGCGCAGAGTTCCTGTGCGTCACCTGCATCGACGCCCACCAGCGCGTGAAGTTCACCCGAGATCACGCAGTCCGGCAGATAACCGAAATGTCCTCAGAGGCGATGGGCGCTTCCACGCAGAAGCCCGTCTTCTGCGACGTCCACAGGCAGGAGCCGCTGAAGCTGTTTTGCGAAACCTGCGATCGCCTCACCTGCCGAGACTGTCAGCTGCTCAAGCACAAGGACCACAATTACCAGTTTCTAGAAGACGCCTACAAAAACCACAAGGAGCATCTGGAAAACATGACCTGCCAACTtcaagaaaagaagaaagttataGAGGACATATCTAATACCATAAGCAATGGTCTTCAACAGGTGGATGAAAACCGCAAGACTGTAGCTAATGAAATCAAAAAATCCATCTGCAATCTCATAATGGAGATCAACAGGAAGGGGAAGTTATTGGTCAATCAACTCGAGGCGATCACAAAGGACCACGAAACGTTCCTGAAAAAGCAACAGCAGGATGTGACATCACTCTCCACGCATCTTGATCACGTGATCAACTTCACAAAATGGGCCACAGCCAGTAATAGCGGAACAGCCCTCCTGTACTGCAAGCGCTTGATAACTTGTCAAATTCAGTACCTCATGCGAGCAAAGTGCAACATCTCATACGTTCCCCTGAGTTTGGTCCGGTTCCAAAGTCGATCTGCTTTTTGGGCCTCCAATGTGGATCTTGGTTCTTTAGTCGTAGAGAAAACTCCAGTGCGTCATCCCAGCGGACCGCAGCCATTCCCTTTCCAGCAAATGAACCCAGGCTCTAGACCTGACGGTCTACAGACCGGATTCCCGAGCTCACAgtcccagcagcagcagcagcagcggcaaAGCACACTGGCCCAGCTGCAGATGCAGGTGGAGAAACTCTCTCAGCACTCCAGCCGCCACCAAGCGCCCAACCAGTGGTCGTGGTACCACGGCATGCGCTTACCGGGGCCGACTCCACACAGACCCATGCAGGGTGGATCACCGTCTCAGGCGTTACCCAACATGCCTCAGCATGGGCGTCGGTATGGTGCGCGGAGCCCGCCGCCTATGCTTCAGCCCACTAACTTACCTCCACAGGTGAAGACTTTGAGGGGTCTTATCAGCAATCCCACCTACCCTCCTAAACCGATGGAGGTAGTCCCGAGAACCCGCTATCCGCACGGTGCTGCTTTCTCTGGTGGAGCTTCACTTCCCACTCCACAGACGCTCAGTCAGAACATGCAGGCGACGTCGTATCTGAACAGGAGGTTTGAACCCAGCATGCAGATGTCTTCTCAAAGGCCCAGCTATCAACCCAGTCACCTCTCCATACCTACAGAGCGAACCGTACAAGGAAGACAAATGTCCGTCACATCATCAGAACCAAAGACCAGTCCTGGCACTTGGAAGCGTGTAGAAGCCCCCCAGAGTGGCCcatcaaacccctccaccaagAGGAGACGCAGGTCGTCTCCAGGACCGGTCATTGTCATCAAAGATGAACCAGAGGACGATGACGAAGTTCATTTTGTCAACACTAGTGCTAAAGCTAGTCTTCCAGACAGCAcaggcgttcagtctcaaacgcCACAAGGTGAGCAGCAGTCCGAGAAGACCCCAGAGGCAGACGAAGACCCCAATGAAGACTGGTGTGCGGTGTGCCAGAACGGAGGAGAACTGCTCTGCTGTGACAAATGTCCCAAAGTCTTCCATCTTAGCTGCCATATCCCCACACTGACCGCCTCTCCAAGTGGTGAGTGGTATTGTACGTTCTGCCGTGACCTTACCTCACCTGAAATGGAGTATAACATCGGCGTTAGCGGAGAATCGAACAACGTGAAGCAGGATCCGGATTCTGACGCTTTCACTCCTGTGGATAAAAGAAAATGTGAGCGACTGCTGCTTCGTCTTTACTGCAATGAGCTCAGCACGGATTTTCAGGAGCCTGTAACGCCATCGTCGATGCCAGAGTACAGTGAGATAATAAAGATGCCAATGGACCTGTCTGTGATCAGAAGTAAACTGGAGGACAGCAGATACAAGAGCACTGAGGACTTTGTTGAGGACGTCAGActaattttcaaaaactgtgCAACCTTCCACAAGGAAGACACTGAGATGGCCAATGTGGGTGCTAACCTGGAGAGTTACTTTGAGGAACAGCTGAAACTTTTGTATTTGGAACGGACATTTGCAGGCGTGAAGATGGAGAGCGTTGCCTCTTTGTGTCCTGATGATACAAGCCCCTTATCAAAGACTCCTCCACAAGACACTTCCCCTGCTGAGGAAACCGTAAAACCCTCCGGTGAAGATCCCTCTCCGGCGGAACCACACGCTAAAGAAATTGAGAAGAAACCGGAGAACCTGGGCTCTCCTGCAGGACCCAGTCCAGCAGATGCTGAAACGGACAGTAAACCAACTAAAGATCCAACTTCCTGAACGAATCTTCCTTGTTCATCCTCTAAAGACTGGATGGTGACATGCACTTTCCTAGAGTGTGAAACCTCTGGTTCAATTGCAATAATTATAATGTacgttttaattgttttaagcaTTTGGGAAATAGACAGTTTGTCCACTAAAGATGTAATATAACAATGCAATGTGGAATATAGGCATAATAAATACCTATATAATTATA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43761 lncRNA upstream 90732 18441631 ~ 18465837 (+) True G29548
TU43755 lncRNA upstream 95974 18435643 ~ 18460595 (+) True G29544
TU43674 lncRNA upstream 495653 18059335 ~ 18060916 (+) True G29484
TU43659 lncRNA upstream 554090 17999597 ~ 18002479 (+) True G29476
XR_006250718.1 lncRNA downstream 26081 18591447 ~ 18594116 (+) True LOC122343196
TU43831 lncRNA downstream 35062 18600428 ~ 18603316 (+) True G29591
TU43851 lncRNA downstream 97494 18662860 ~ 18665083 (+) True G29600
TU43888 lncRNA downstream 219679 18785045 ~ 18785246 (+) True G29627
TU43902 lncRNA downstream 249517 18814883 ~ 18815278 (+) True G29633
XM_043237471.1 mRNA upstream 2180 18547531 ~ 18554389 (+) True rab21
XM_043237485.1 mRNA upstream 334249 18218716 ~ 18222320 (+) True LOC122343129
XM_043237484.1 mRNA upstream 335312 18218716 ~ 18221257 (+) False LOC122343129
XM_043237386.1 mRNA upstream 345676 18202735 ~ 18210893 (+) True lman2la
XM_043237237.1 mRNA upstream 558911 17984993 ~ 17997658 (+) True ddx54
XM_043237271.1 mRNA downstream 54185 18619551 ~ 18622911 (+) False LOC122343002
XM_043237268.1 mRNA downstream 54576 18619942 ~ 18627271 (+) False LOC122343002
XM_043237267.1 mRNA downstream 56898 18622264 ~ 18627271 (+) True LOC122343002
XM_043237270.1 mRNA downstream 57655 18623021 ~ 18627271 (+) False LOC122343002
XM_043237265.1 mRNA downstream 62059 18627425 ~ 18632437 (+) True LOC122343000
TU43756 other upstream 95252 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 255380 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2082188 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2570843 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 2714714 15841372 ~ 15841855 (+) True G28891
TU43926 other downstream 317813 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 724854 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 1165896 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 1180375 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 1472572 20037938 ~ 20040195 (+) False LOC122343063

Expression Profile