RNA id: XM_043237237.1


Basic Information

Item Value
RNA id XM_043237237.1
length 3470
RNA type mRNA
GC content 0.52
exon number 20
gene id ddx54
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17984993 ~ 17997658 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGACGTCATCTCTGTGCGCAGGACCGTCTTCTTCACACGTGTTTCCGAACGTCTCCGGTGTTTTCATCTCGCTTTTCTTGGATTAAACAGCGACGTTTCCCGACAGCAGCGGGGTTTTAGCGATGGCGCAAAGGAAGAAGAGGCtgctgaggaggaagaagagagaTCACGAGCTCCAGTCCGACGATGAAGAGTTTGAAGTGACCACACGAGTCAAAGATGACCAGGACACATCCAGCAGAAGACTGCCTCGGTTCCCAGCTTCGTCCGAGTGTGTTTCTGACGTGGAGCTGGACACCAGAGAGCTCGTCCGAGCCcagaacaagaagaagaagaagtctgGAGGCTTTCAGTCCATGGGTCTCAGTTATCCGGTGTATAAAGGAGTCATGAAGAAGGGCTATAAAGTTCCCACACCCATCCAGAGGAAGACGATCCCGGTGATCCTGGACGGGAAGGATGTGGTGGCCATGGCTCGGACCGGCAGCGGGAAGACGGCCGCGTTCCTCGTGCCCATGTTCGAGAAGCTGAAGGCCCCGCAGGCACAGACAGGGGCCCGAGCTCTGGTCCTCACACCCACCAGAGAACTCGCCCTGCAGACCATGAAGTTCACCAAAGAGctgGGGAAGTTCACGGGTCTGAAAACAGCGCTGGTTCTCGGAGGAGACAGCATGGACGACCAGTTTGCTGCTCTTCACGAGAATCCAGACATCATCATCGGTACTCCTGGTCGTCTGATGCATGTTATTCAGGAGATGAACCTGAAGCTGCAAGCCGTGGAGTACGTGGTGTTCGATGAAGCTGACAGGCTGTTTGAAATGGGTTTTGCGGAGCAGCTTCAGGAGATCATCAGACGTCTTCCAGACACGAGGCAGACGCTGCTGTTCTCTGCCACGCTGCCCAAAATGATCGTGGAGTTCGCCAGAGCCGGCCTCACGGAGCCGGTGCTCATTCGTCTGGATGTGGACACGAAACTGAGCGACCAGCTGAAGCTTTCCTTTTTCCACCTGCGTTTGGATGATAAACCGGCTCTTCTGCTGCATCTGCTGAGAAACGTGGTGAAGCCTCAGGAGCAGACGGTGGTGTTCGTAGCCACCAAACATCACGTGGAGTATCTCAAAGAGcTCCTAACAGTCGAGGGCATTGAGTGTGCCTACATCTACAGCGCTCTGGACCAGACGGCCCGTAAGATCAACATCGGCCGCTTTGTGCACCGCAAGGCCATGGTGCTGCTGGTGACGGACGTGGCGGCCCGTGGCATTGACATCCCGCTGCTGGACAACGTCATCAACTACAACTTCCCTTCCAAGGCTAAGCTGTTCCTGCACAGAGTCGGTCGTGTGGCTCGCGCCGGCAGAGGAGGAGCTGCCTTCAGTCTGGTGTGTCCCGATGAAGTGCCTTTCCTCTACGACCTCCATCTGTTCCTGGGTCGACCGGTTCAGCTCGCCCTCCTCGAACACGCGCCAGATGCTGACGGCGTCTTGGGCCGAGTTCCTCAGAGCGTCCTGGACGATGAAGAGTCTCAGCTGCTGACGGCTCACGAGAACTCCCTGGATCTCCAGAACCTCCGGCGCGTCTCTGAGAACGCTTACAAGCAGTACCTGAAGTCTCGGCCGAACCCCTCCGCCGAGTCCATCAAACGTGCCAAGAACACCGACCTGTCCTGCATGGCCGTTCATCCTCTGCTGGGGTCCGGACTGGAGCCGATGGAGCTGGACCGGCTGCTGATGGTGGACTCCATCAAGGGCTACAAGTCCAAATCTacTATCTTTGAAATCAACTCCAACAACAAGAGCAGCGCCAGCGAGGTGATGCGAGCCAAACGCTCCCGAGACGATCGGCTGCTCGACAAGTTTTCTAAAGCGCGAGCGGAGCGGTTAGTCGAGTCTGCGGTCCCCGTCGTAACCAGAACCGAACCTCAGCCCGAGGAGGACGACGAGCTTCAGACTGTGTTCTCAGAGGTGGTTGGAGGAAAAAGACGAAAGCAAGGTGATGAAGCGGACAGACCAAAGAgcaaaaaaatcagaaaatctGGAAAAGATGAGGAGTTTTACATCCCATACAGACCTAAAGACTTCAACTCTGAGCGCGGgctcAGTCTCGGCCGTGACGGAGGCTCTTTCGAGCAGCAGGCCTCTACTGCCGTCCTGGACCTGATGGGAGACGAGAGCAGCACGTTAAACCAGCACAAGAGTCTGATGAAATGGGACCGCAAGAGGAAGCGCTTCGTCCGAGACACGGGCAAAGAGGACAAGAACAAGAAGATCAGGACAGAAAGCGGGCAGGTGGTCAAcagcaaaaagaagaagagcttTTATGAAGAATGGAAGAAGAAGTATAAGATCGACGACAGAGACTCGGATGAAGAAACCGGAGGAGCAACGAGAGGCAGGAGCTTCGGAGGCCGCCGAGGTCGAGGAGGAGCTCCGGCGCAGCAGCGGAGCGGGTCAGGCGTCCGATCTGAGCTGAAGAACCGCGATCAGATCCTCAAGCAGCGCAAACGCAAAGCCAAGCAGCAGTTCCTGCAGAGCGGCGGCATGAAGAAGCTCCGGGCCAAAGGACGCCAGCGTCTGCAGGAAGTCATGAAATCCGGCTTCGGTCGCGGCGGCTTCAAGAAAGGAAAGATGAGGAagaaactttaactttaaatgaGGAACGACGCGCACCTGCAATCAGTGACGCAGAAAACCGGATGGACCTGTTATATACGGCTAGAACGAGTGAATGTTTGATCTGTGCGTCTCTTAAACTgatttaaagggatggttcaggTTCAACTGAAGCTCTGCTGGCGGCTGGGAGCTTGTGGAAATACATTAtcacaaaaaatgatttactgtgtttttgtttaataaacgATATTTAGAGTAAGACACTTTCAGTGGAAGTCTATGGGCCAGGCAGTGCATGCACCGGTTCATTTGGCCTAGTCTGCAAAGCTTTATCTGGTTCTTAAAGGTCTCTTTTGCACGACATTCACAAAACTCCTTTAAAAAGGTAAGACTAATATTTCTGAACTGATTAATTACTAGAGTTTTGTGGAGCTGGGCCTGGGGTCAAACTCAActtgatgggtttttttgttcaaattaatgttaaatattaatgtaaatgttctaGTTGACTGTTAAAGCGCCCTATGAAGTAGACTTGCAATCCAGGAGCAAACATGTTCACTTTTAAGGGCACTGCAGGCgctctgttttttatttatacattgaAGTTTTGATCTGTTGAATTATTTAGTAGCACACCGAACGATTGGTGGTGCATCTAATTGTAAAGACTTCTAagaaacaaaaagcacaaaataagaAACACGTTGCATTCACGaccaaataaataacacttcaTTTCTCCAGAGTAAGTGAACAGTCAGGGTCAGATCGTGTGTTTCAGTCTATTATTGTTCTCTGTAAACATGAACAAAGTGTATTaagtaaaaacgtttttaagaaaatatgaaaa

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14808 DDX54, DBP10; ATP-dependent RNA helicase DDX54/DBP10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43440 lncRNA upstream 19242 17884328 ~ 17965751 (+) True G29320
TU43441 lncRNA upstream 19242 17884328 ~ 17965751 (+) False G29320
TU43518 lncRNA upstream 52589 17931884 ~ 17932404 (+) True G29364
TU43430 lncRNA upstream 62104 17920709 ~ 17922889 (+) False G29318
TU43427 lncRNA upstream 65383 17916054 ~ 17919610 (+) True G29318
TU43659 lncRNA downstream 1939 17999597 ~ 18002479 (+) True G29476
TU43661 lncRNA downstream 1939 17999597 ~ 18001240 (+) False G29476
TU43674 lncRNA downstream 61677 18059335 ~ 18060916 (+) True G29484
TU43755 lncRNA downstream 437985 18435643 ~ 18460595 (+) True G29544
TU43761 lncRNA downstream 443973 18441631 ~ 18465837 (+) True G29548
XM_043237201.1 mRNA upstream 21474 17939684 ~ 17963519 (+) True abl1
XM_043237202.1 mRNA upstream 21474 17947838 ~ 17963519 (+) False abl1
XM_043237406.1 mRNA upstream 47077 17933305 ~ 17937916 (+) True exosc2
XM_043237407.1 mRNA upstream 47077 17933368 ~ 17937916 (+) False exosc2
XM_043237498.1 mRNA upstream 69399 17912439 ~ 17915594 (+) True fabp1a
XM_043237386.1 mRNA downstream 205077 18202735 ~ 18210893 (+) True lman2la
XM_043237485.1 mRNA downstream 221058 18218716 ~ 18222320 (+) True LOC122343129
XM_043237484.1 mRNA downstream 221058 18218716 ~ 18221257 (+) False LOC122343129
XM_043237471.1 mRNA downstream 549873 18547531 ~ 18554389 (+) True rab21
XM_043237231.1 mRNA downstream 558911 18556569 ~ 18565366 (+) True trim24
TU42966 other upstream 1510612 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1999267 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 2143138 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 2329812 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 2429311 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 302757 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 438802 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 885521 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 1292562 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 1733604 19731262 ~ 19786128 (+) False G29835

Expression Profile