RNA id: XM_043237254.1


Basic Information

Item Value
RNA id XM_043237254.1
length 2947
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC122342994
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24207655 ~ 24220008 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCAGGAAAATACCCGTATTTGATCAAGAAAACAAGtcttaaacatatatatttaaaataattgtataaagCCATATTGAAATAAGTCATTTATTATCATGAtcgtttaataaattgtgtttatttgtaaaatgacCAGCTTCTCCTCGTAGCCTCAGCACTGCTCTAAACAGGAAGAACCTTgctgagaaaaagaaagtgaaagcaGATTGTGTTTTACATGCGACGTTTACACTTGATCGTAAgaacttttcttcattttcaaaaactgatcattcatctttttatttgttcttgtgGGAAGATACATAAACTTCAtgagaaaacaaagacattttgagaagttgtctagaaactgaacgttttgatcaaagcaagtcttcagctgtggagcagaaagacacttccttattcatAGTCAGTGTTGAAGATCAAACTGTTCAGATCCatcatgaatgaaacacaaacatctggAGATGAAGAGTATTCTCCAGCCTGCAGctcagttcatcagaagagatcagaagcagagcccagctgtgtgtctatgaagagtgACAGGTCTATGGATGAGCCAATGAAGTTTAAGAGTGAAGATTCACAGCCTGGACTCAGttcagttcatCAGAAAAGATCAGAAGAAgagtccagctgtgtgtctatgaagagaGAGACATCTGTGATTCAGTCTTTAGATTTTAAGAGAGGAGTCCTCGACACACTTAGATCAAATCTGCTGAAGAAgtttgagtgtctgtgtgagggaACAGCGACGCAGAGAAACCCAACACTGCTGAATAagatctacacagagctctacatcacagagagtgagagaggagagatcaaTAATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGAGAAGCAACAGAGGACACAGCCATCAAATGCAGTGACATCTTCAGACCTTTACCTGGACAAGACAAAGACATCAGAACTGTGCTGACAAAGggagtcgctggcattggaaaaacagtctctgtgcagaagttcatcctggactgggccGAAGGGAAAGACAATCAGGACGTCCAGCTcatatttccacttcctttcagagaaatcaacTTGATGAAGGACAAAACACTCAGTCTTTCAGATCTTCTTAACAACTTTTTCCCTGAaactaaagaaatggaaatatccagtgatgaatataaagtgttgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTGGACTTTAAGAGTAAAGTGAATCTGTGTAATATATCTGAGTCAGCCTCAGTGgatgtgctgctgatgaaccTGATTGTGGGGaatctgcttccctctgctctcatctggatcacctccagaccagcagcagctgatctcGTCCCCTCTGAGTGCGTCCATCGAGTGACAGAGGTACGAGGCTTCAATGAGCCCCAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCAGAGTCTGGCCGACAGGATCATCTCACACCTGAAGTCCTCCAGGAGCCTCttcatcatgtgtcacatcccagtcttctgctggatctcagccactGTTCTTGAGAAGATCTTGAGTCAAGCAGAGACTGGAGAGATTCCCAAGActctcactcaaatgtacacacacttcctgatccttcagaccaacatcaaacatgagaaAAACTATGAGAAGAACGTGACAGATGAAGACATGATCCTCAAACTGGGGAAACTGGCTTTCCAGCAGCTTGTGAAAGGAAACCTGATCTTCTATGATGAAGACCTGAGAGAGTGTGGCATTGATGAGACAGAAGCATCAGTTTACTCAGGACtgtgcactcagatcttcagagaggagcTGGGCTTGTTTCAGGGGAAAGTCTTCTGCTTCATTCATCTGAGCCTTCAGGAACATCTAGCAGCTCTATATGCACACCTCTCCTTAACATTAAAGAAGATAAATGTGTTTGACCAAATCCAACAAAAATCTTTCTTTACTGTCTTCTTTAATAAAATCAGACTATTATCTGAGCTGCATGAGAGAGCTGTGAACGAGGCTCTAAAGAGTAAGAATGGACACCTGGATCTTTTCCTGAGGTTTCTTCTGGGTCTCTCAGTGGAGTCCAATCAGACTCTCTTAAGAAAACTACTgacacagacaggaagctgcTCCGATAACAAAGAGGAAACAGTTCAGTTCATCAAACAGAAGATCAGTGAGAATCACTCTTCAGAgaaatccatcaatctgtttcactgtctgaatgaactgggtgatgattcactgatgcaGGAGATCCAGGGTTATCTGAAATCTGGAGGAATAAGAGAAATCAAACTCTCCTCTTCACAGTGGTCAGCTCTGGTTTATGTGTTGCTGACATCAGAGCAGAAGATGGATGTTTTTGATCTAAAACAGTTTATTGGGAAACGAGATACAGTAGATGAAGTTCTTCAGTATCTGTTACCTGTGGTTAAAGAATCCAGATCAGTTCGACTTACAGGTTCGATAAGTGAATGATTTCTAATCCTGACTGCAAGAGGCTCAATCTCTATGACAAAAAGCAAAGGACTGAATGGATATTTCAGCCAGAAGATCTGGAAAGATGTGTATTGGTCTGCCCTCATAGTGAAGAGGAACCAGTTGAagtattttttccttctttggAAAGTGATGAATCTGATGAATCcataaattgttttatgacaaAGGGCTTCATTCTCTGATTGTATTTTCACACACTTCTGCTCAATGTGAGAGAGCAGACGGTCAAAATCTGCAGTAGCATTTACAACCTCAATTGATTCTATCCCAGAGCCTCAAAAAAGATGCCTGAGTGGACACCAAAGATGCTTCCACAAAAAACTAATCGGTCGGTCATCGTTTTGCTCATATTCTTTAATGTCAAAAGAATACTGCTAGATTCAGACTCGAAACCAGACTCAGAGACTGAAGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45931 lncRNA downstream 79747 24126947 ~ 24127908 (-) True G31088
TU45933 lncRNA downstream 81994 24122812 ~ 24125661 (-) True G31090
TU45925 lncRNA downstream 106788 24100450 ~ 24100867 (-) True G31082
TU45912 lncRNA downstream 170904 24036349 ~ 24036751 (-) True G31072
TU45903 lncRNA downstream 197605 24003692 ~ 24010050 (-) True G31063
TU45958 lncRNA upstream 29828 24249836 ~ 24426069 (-) True G31109
TU45956 lncRNA upstream 31448 24251456 ~ 24259462 (-) False G31109
TU45957 lncRNA upstream 31697 24251705 ~ 24259462 (-) False G31109
TU45968 lncRNA upstream 78772 24298780 ~ 24502175 (-) False G31115
TU45970 lncRNA upstream 78772 24298780 ~ 24540339 (-) False G31115
XM_043237481.1 mRNA downstream 278121 23816849 ~ 23929534 (-) True LOC122343128
XM_043237483.1 mRNA downstream 278121 23816898 ~ 23929534 (-) False LOC122343128
XM_043237441.1 mRNA downstream 479737 23725752 ~ 23727918 (-) True LOC122343107
XM_043236117.1 mRNA downstream 772130 23416891 ~ 23435525 (-) True LOC122342328
XM_043237389.1 mRNA downstream 948336 23256365 ~ 23259319 (-) False LOC122343073
XM_043237510.1 mRNA upstream 45341 24265349 ~ 24266607 (-) True LOC122343156
XM_043236125.1 mRNA upstream 92834 24312842 ~ 24319112 (-) True LOC122342338
XM_043236128.1 mRNA upstream 105380 24325388 ~ 24327263 (-) True LOC122342340
XM_043237349.1 mRNA upstream 256988 24476996 ~ 24479914 (-) True ckap4
XM_043237444.1 mRNA upstream 265354 24485362 ~ 24492499 (-) True LOC122343108
TU45934 other downstream 96982 24110224 ~ 24110673 (-) True G31091
TU45890 other downstream 435887 23745486 ~ 23771768 (-) True G31050
TU45855 other downstream 661286 23497129 ~ 23546369 (-) False G31017
TU45768 other downstream 770640 23434980 ~ 23437015 (-) False LOC122342328
TU45110 other downstream 1962495 22128454 ~ 22245160 (-) True G30450
TU46017 other upstream 84088 24304096 ~ 24497596 (-) True G31134
TU45989 other upstream 86493 24306501 ~ 24495178 (-) True G31120
TU46025 other upstream 103962 24323970 ~ 24327232 (-) False LOC122342340
TU46026 other upstream 105776 24325784 ~ 24327232 (-) False LOC122342340
TU46027 other upstream 106787 24326795 ~ 24327232 (-) False LOC122342340

Expression Profile