RNA id: XM_043237262.1


Basic Information

Item Value
RNA id XM_043237262.1
length 2603
RNA type mRNA
GC content 0.43
exon number 14
gene id LOC122342998
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 24558132 ~ 24564000 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTAGGAAGTGAGCTTCATATAAACAGGAGCAGGAACCCAGCGATTGTACTTCCTCCACTCAGGCACCATGTGGATTTACAAGGTGACCGTGTATAGCATGAGACAGATCATGGCCAAGGCAACGAACAGTATTTACCTGACGCTAATGGACTCGGAGCAGAAGAGCAGCGGAAAAGTCCTGGTCAACCCatccttcttttcttcttttgcaaCGGAGCTCACCCTCGAGATCCACGTGGAGAAGGAACTTACAGACAGCGTCCAGGTGAAACTTGAAAAGAAGagccattattttaattattcctgGTTCTGTAAGCATATCAGTGTGAGAAGTCCTTTTGGAGAAAGCTTGGAGTTCCCCTTTTATAGCTGGTTGGAAGACAAAAAGGAAGTGACCATCCAAAAAGGCACCGCTCGACTGCCTCAGGATGacacaaacataaaagaaagaCAAGAAGAACTGAAACATAGACGGGAAGTATTCAGATGGAAGGAACAAAACCAAGCCTTCCCTAAATGTATAGATGACACAGAGGGGGGGCTTCCTAAAGACGTTCAGTTTGATGGACAAAAAGGATTTGACTTTCAAAAGAACTTCCTAGAAGCGTCTCTGGAATTAGGTCTTGACAAAATTGAAGGATTAGTAGAGTCCTGGAAAGACATTACTGATTTTGAAAAGATATTTGAGCATTACAATATCAAGAACACTCCACTAGAGAACGTGATACAAGACTGGACCAAGGATTACATGTTCGGCTACCAGTTCTTGAACGGCTGCAATCCTGTCATGATCAAGAAGTGCACGGATCTTCCAGAGAAATTCCCCGTCACACACGAGATGGTCAAGGGCTCTCTGAAGGGACGCCAACTACATGAGGAGCTACGGAAAGGAAACATCTACATAGTGGATTATGAAATACTGAAGGACGTCCCAGCAGCCAGCCAGCGCTATCTGGCCGCACCAATCTGTCTACTGTACAAGAACGAAGTGGACCAAATGTTGCCAATCGCCATTCAGCTGAGTCAAACCTCAGGAGAAATGAGTCCAATCTTTCTTCCGAGTGATTCTAAATATGACTGGATGCTTGCCAAGATGTTTGTGAAATCCTCAGACTTCATCGTACACCAGCTGGTCACACACCTTCTCAAGACACATCTGGTGTCTGAGGTTTTTGAAATTGCCATGTACAGACAGCTGTCTGCCGTCCATCCCGTATACAAGTTACTGATGCCTCATGTTCGTTTCACGATCGCAATCAACGCAGAGGCCCGTAAACACCTTATCAGTGAAGATGGGGTCTTCAGCAAGATTAGTAGCATCAATGCAGATGGGATGGAGAAACTGGTGCAAAATGCCATGGAGGCTTTATCCTTCAAGTCCCTGAACATCCATGAGGACATAAAGGCTCGAGGAATGGAAGATACACCCAACTACTATTACAGAGACGATGGCTTGAAGATCTGGGAGGCAATCCACCATTTTGTTTCGGCCGTGGTCAAGATCTACTATGATAGCGATGAAGCAGTTCGAGAAGACGTGGAGATTCAAAGATTTGTTAAGGACGTTTCCTGCTTTGGCATGAATAACTCTCACAAGTTTCCAGAGTCTCTGGAATCTCGAGAGGAGTTGATCGAGTACCTGACCGTGGTGATTTTCACAGCTTCAGCACAACATGCCGCTGTCAACTTCGGACAGTTTGACTGGTACGGCTGGATCCCCAACAGTCCTTCCACCATGCGCAGACCACCTCCTCAACGGAAGGGGGAAGTGGATATGAAGCGTATCCTGGAGACTCTGCCGGACCGGGATTGTTCCAGCTTGGTTTTGGGTACAGTCTGGGCTCTCACTCGGATGGAGAAGAATGAGCTGTTCTTAGGCATGTATCCAGACACATTCTTCACAGAGCAACCTGTGAAGAAGGCCATAAAGACTTTCCGCAAGAGCCTCAGTGAGTTGACGGAGACAATCAAGAACCGGAATGAAAAATTAACTTTGGATTATTCTTATTTGTCCCCAGACAGAGTCCCCAACAGTGTTGCAATTTGATTGTCAAGAAGAGACGCTTCATTTGGCTATGCTTTCAAAGAGCACACACAGGTTTATGTTATGATCGGTTTATTGTTGAGTTCTAATTTCTAAAAAGTGTGTATTCATGCATCCCTGCTAtgatgttcatttattcatcttttggTTAATGTACTCAGGTTGCGGTGTACTGTaggttgttgggttttttttttactttattgatGTCTATCATTGTTCAGGCTTAATTTCTTTGGGTATGGGCTTAGCTGAAAAACGTTTAATGAATGCTTTAAAGGAATTGTTTTGCGATTGGGAACATCTCTGACTTCTGATGGTTTTGCAtttatgtttctatttttaactcTCATAAGAAAAAtagataaatgtttttcattacatcttttttttaatttcccttTCTAGTACTTTCTTGTAATTAATTAAGTATTTTCCAGATCTAAATGTAACGGTGTGTTTTCAGTGAATTCATTAATGTTCAGCTGTGCCTGCCGTGTTTGAAAATGCTagaagttgattttttttgtgataaataaaatattttaaatcaaatgaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0051213 dioxygenase activity molecular_function

KEGG:

id description
K15718 LOX1_5; linoleate 9S-lipoxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46052 lncRNA downstream 5277 24513956 ~ 24552855 (-) True G31161
TU45970 lncRNA downstream 17793 24298780 ~ 24540339 (-) False G31115
TU45968 lncRNA downstream 55957 24298780 ~ 24502175 (-) False G31115
TU45967 lncRNA downstream 55957 24500852 ~ 24502175 (-) True G31115
TU46045 lncRNA downstream 91576 24465363 ~ 24466556 (-) True G31155
TU46084 lncRNA upstream 72261 24636261 ~ 24639737 (-) True G31179
TU46099 lncRNA upstream 103638 24667638 ~ 24669294 (-) True G31189
TU46102 lncRNA upstream 123528 24687528 ~ 24688132 (-) True G31192
TU46105 lncRNA upstream 133907 24697907 ~ 24710380 (-) True G31194
TU46110 lncRNA upstream 146784 24710784 ~ 24711425 (-) True G31199
XM_043236131.1 mRNA downstream 13962 24542138 ~ 24544170 (-) True LOC122342346
XM_043237444.1 mRNA downstream 65633 24485362 ~ 24492499 (-) True LOC122343108
XM_043237443.1 mRNA downstream 66686 24486434 ~ 24491446 (-) False LOC122343108
XM_043237349.1 mRNA downstream 78218 24476996 ~ 24479914 (-) True ckap4
XM_043236128.1 mRNA downstream 230869 24325388 ~ 24327263 (-) True LOC122342340
XM_043237239.1 mRNA upstream 18967 24582967 ~ 24593953 (-) True LOC122342983
XM_043237376.1 mRNA upstream 63064 24627064 ~ 24631306 (-) False LOC122343065
XM_043237383.1 mRNA upstream 63064 24627064 ~ 24630716 (-) False LOC122343065
XM_043237377.1 mRNA upstream 63064 24627064 ~ 24630716 (-) True LOC122343065
XM_043237380.1 mRNA upstream 63064 24627064 ~ 24630716 (-) False LOC122343065
TU46017 other downstream 60536 24304096 ~ 24497596 (-) True G31134
TU45989 other downstream 62954 24306501 ~ 24495178 (-) True G31120
TU46025 other downstream 230900 24323970 ~ 24327232 (-) False LOC122342340
TU46026 other downstream 230900 24325784 ~ 24327232 (-) False LOC122342340
TU46027 other downstream 230900 24326795 ~ 24327232 (-) False LOC122342340
TU46123 other upstream 195000 24759000 ~ 24760786 (-) False LOC122342407
XR_006250852.1 other upstream 787989 25351989 ~ 25352153 (-) True LOC122343864
XR_006250869.1 other upstream 788399 25352399 ~ 25352587 (-) True LOC122343882
XR_006250841.1 other upstream 789921 25353921 ~ 25354084 (-) True LOC122343852
XR_006250860.1 other upstream 790337 25354337 ~ 25354527 (-) True LOC122343873

Expression Profile