RNA id: XM_043237265.1


Basic Information

Item Value
RNA id XM_043237265.1
length 3379
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC122343000
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18627425 ~ 18632437 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACAGAGAGACGCCATCATACTCACAGAATTCAACAACTACACCCCGAAAAAAGAGTTGACCCGAAGCCCCAAGGTGCTGGAGCATCAGGTCCCTGTGATAGCACATTTGCTCTCGAGACTGGGCCAGTCGTTTATGTCCTGATGCCCACTTCCCGTAATGGCCCATGGCGCCCTCCACGATCTTTGTGAAGATGCAGGGGGACAGGGACAGCCTGAAGGGCAGTACTTTGTACTGCTGAGCTTGACCCTTGAATACAAATTAAAGAAATGGTCTGCGTCAAGGAAAAATTGAGACATGGAAGCACACATCCTTTAAGTCAACCGCTGCAAACCTGTGGCTGAACACATTTGGTAATGCATTTCTGCATCTGCATTTTGAACTGGAGCTTGCAAATGGCCCGATTCATAACACGCAGGTCCAGGATTGTCCAAAGGCCACCTCCTTTTTTTGGCATGATGACCTCGTCTCGGCTGGAGGGACCGGCTCGATTGTATCCTTTGCCAGGAGGACAGTGAGCGCCTTGGACCGCAACTGAAGTCTGGAGAACAGTGCAGGGGGAGTGTTCGCTTGAGAACCATACCAGACCGTTTCTGGCCCAAAAGACTTGCGCACAAATGACATATTTTCAAGACGTGCAGCAAATTCAAAACCAACAAATGTGTATCAGTTAATATTAATCGATTTCTGCAATGAAACGTCACAGCTTCGTCGCACGCTTTTGCTGGtagttttgaatattttcagaaacatctattttacttaatatattttgaatatactTTTCTGttcactttgttttgttttttttgaacagAACCTCTATTTTTGGACCGGCGGCGTGACGTCATAAGGCTGCGCCGCGGTCCCGCGTCAGTTGTCATTCTgctaaaaaaaagaaaaactaTTAAGATGGCGGTTATTAAAGAGGAAAGTGAAGACATGAGGATCGAAGCGGACTTCAGAGTGAAACAAGAAGACGCCGAGGATCAAGCAGATCTGATCAtactgaaagaagaaagccaagAACTGCCTGAAACGGAAGAGAAAGATAAGTGCGAGAAGCTTCACGATTTCACAATCGGAGAGAAATCCCATCCCACCGGAAAAAAGCCCTCTCGGAAGAGGGCTCAAAAGGCGGATTCCAACAGCTATTTCACCTGCTGtcagtgcggaaagagcttcAATCAAAAGCAAAACCTCGAAGTCCACATGAGagtccacactggagagaagccctTCAGCTGCCAGCAGTGCGGAAAGTGCTTCACTCAGAAAGGAAACCTCAAAAGTCACCTgaggattcacaccggagagaagccttacaccTGCAAGctgtgcgggaagagcttcacgGCAGAACCGAACCTCAAGTACCACATGAACATTCACAATGGAGTGAAGCCGTTCACTTGcgatcagtgtggaaagagcttcacTCGTAAAGTAACCCTCAATTACCACACCAGGAGTCACACGGGGGAAAACGGTTTAATTTGCCACCACtgcggaaagagtttcagtCACAAAGTGAGCCTCAAGACTCACATGAGgcttcacaccggagagaagccctacACCTGCCCTCAGTGCGGGATGAGCTTCACGTACAAAGCATCCCTCGATTCTCACATGGGAAGCCACGCTGGGGGGAATCCTTACTCCTGCAAAgtgtgcgggaagagcttctcGCTGAAAGGAAATCTCAAGACTCACACGagaatccacaccggagagaagccgttcgTGTGCGTTCAGTGCGGAAGGTGCTTCACGCGTAAAGTAACCCTCAATTACCACATGAAGATTCACTCGAGGGAGGACTGCTTCATATGCCATGAATGTGGAAAGAGCTTCCCAGACATGAAACACCTGAACAGGCATGTGGTAATTCActccggagagaagcctttcaaATGCCAGCAGTGCGGAAAGGGATTCCAGTTCAATAAAAACCTCAAGACTCACGCGAAAATTCACACGAGAGAAAAAACGTTCAAATGCcatcagtgcgggaagagcttcagcTACAAAGTGAGCCTCAAGACTCACATGAGacttcacaccggagagaagccctacGCCTGCCCTCAGTGCGGGAAGACCTTCGCGTATACAGCGACGCTCAACGCGCACATGAGGAGCCACACCGGAGAGAGGCCGTACGCGTGCGgtcagtgtgggaagagtttcacgCGCAAAGGAAACCTCAATTACCACACGAGGATCCACTCTAGGGAGAACAGTTTTAAGTGTCTTCAGTGCGGAACGAGTTTCGCTGACGGGAACCACCTCAAGAGTCACGTGACGACTCACGTCGGGGAGAAGCCTTTCATGTGCCGTCACTGCGGAAAGAGTTGCGCCAACAAAACAAATCTCGAGGTTCACGTAAGggtccacaccggagagaggcCTTTCACCTGCCCGCAGTGCGGGAAAGGTTTTACACTCAAAGGGAATCTTAAGACGCACATAAgagtccacaccggagagaggcCGTTCACGTGTCTTCAGTGCGACAAGACCTTTACGTATCAAAGAGATCTGAAACATCATCTGCGAACGCATTCTGAGAAGAAGCTCCAGTGCTTCGAGTGCGGAAAGGGATTTCGGAAAACCGGCAACTTCAGAAAGCACCTGCGCATTCACTCGGGAGGGAGGCGatgtaataaaaaattcatttcGCCGGCGCACTTACAGATACACTTGAAGAGGCGCTATTTGTGCTCCTCGTGTGGAAAGAGGTTTAAATGGCTCAGCGGTTTAAAATGGCACCAGAAAATACGGATCTGTGTGAAATTGAAAATTTCGCCTCCGCTAAACGCGGGCCAAATCTGATTCTCCAGCTTCATGACCGCTTGCCTCCGTGTACTTTTGTCTTGAGGTTTCTTCGTTCTTTTTGTCGTGTACTCACGGGCTTTCACTTCACTTATGTAAAATATTGAGTGCTTATGTAGAGGCATCGCTCCATTCCACGTGTTTATATCTCAGAATCGTAATATTAGTTGAACTTCTGTCTTGCTGTGAATTACTGCATTATTCAGCGTAAGGAAGACtgtaaataaaagaacaaaaactgtATGAAAACCGATAAATATCTGGACTTTGACATGGATGTTGGGCATCATCTGGTGACAAAACTGTAAAAGcacttctgtatttttagcTTATACAATGGACGATGTTAACACAGCGTTACAAAAAAACGCTGGCTAAAGGTTAAAGCAGTACTTCCCTATACATATAGTATATGTATGCTAATGTATAGTATCAGCCTAGTATATTCCATCTGGTAGCGAACACAGGTGTACTAGAAAGTTTAATCTCTGTCCAGTGTCTGCGCCGTTTCTCTCCACAAGGTATAAAAATGTCTTGttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43831 lncRNA upstream 24109 18600428 ~ 18603316 (+) True G29591
XR_006250718.1 lncRNA upstream 33309 18591447 ~ 18594116 (+) True LOC122343196
TU43761 lncRNA upstream 161588 18441631 ~ 18465837 (+) True G29548
TU43755 lncRNA upstream 166830 18435643 ~ 18460595 (+) True G29544
TU43674 lncRNA upstream 566509 18059335 ~ 18060916 (+) True G29484
TU43851 lncRNA downstream 30423 18662860 ~ 18665083 (+) True G29600
TU43888 lncRNA downstream 152608 18785045 ~ 18785246 (+) True G29627
TU43902 lncRNA downstream 182446 18814883 ~ 18815278 (+) True G29633
XR_006250682.1 lncRNA downstream 270798 18903235 ~ 18907824 (+) True LOC122343164
TU44148 lncRNA downstream 299882 18932319 ~ 18932690 (+) True G29777
XM_043237268.1 mRNA upstream 154 18619942 ~ 18627271 (+) False LOC122343002
XM_043237267.1 mRNA upstream 154 18622264 ~ 18627271 (+) True LOC122343002
XM_043237270.1 mRNA upstream 154 18623021 ~ 18627271 (+) False LOC122343002
XM_043237271.1 mRNA upstream 4514 18619551 ~ 18622911 (+) False LOC122343002
XM_043237231.1 mRNA upstream 62059 18556569 ~ 18565366 (+) True trim24
XM_043237266.1 mRNA downstream 1672 18634109 ~ 18646928 (+) True si:ch211-166e11.5
XM_043236044.1 mRNA downstream 14361 18646798 ~ 18655105 (+) True LOC122342234
XM_043236045.1 mRNA downstream 126117 18758554 ~ 18782810 (+) True LOC122342235
XM_043237430.1 mRNA downstream 173013 18805450 ~ 18809963 (+) False LOC122343102
XM_043237434.1 mRNA downstream 173014 18805451 ~ 18809963 (+) False LOC122343102
TU43756 other upstream 166108 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 326236 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2153044 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2641699 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 2785570 15841372 ~ 15841855 (+) True G28891
TU43926 other downstream 250742 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 657783 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 1098825 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 1113304 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 1405501 20037938 ~ 20040195 (+) False LOC122343063

Expression Profile