RNA id: XM_043237266.1


Basic Information

Item Value
RNA id XM_043237266.1
length 2056
RNA type mRNA
GC content 0.47
exon number 9
gene id si:ch211-166e11.5
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18634109 ~ 18646928 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGTAGTAGGAGTTTCAATGGATAAAAACCTCTGGTCGAAGCGGATGAGGTTCATGCGACGCGCCGTTAAGAAGATGGCGTTCATTAAAGTGGAAAGCGAAGACATGATGATCGAAGAAGCGTTCAGAGTCAAGCATGAAGACGCTGAACAACTGACTGAAGCTCCAAAGTCTTGTCCAGCCAAACTCCGCATCATTCTTCAAGACCATGACATTCGCAAACTGGACTTGCCTCAGGGAATCCCTGGGACTGTGAGCGAACTCGAGTCTATTGTGAGGAAGACGTTTGGCCTCAACGGGAACTTTACTTTGCATTATAAGGACGCCGATTTCGGGGAGGAGTATTTTTCTCTTACCTCAACAAGCGACATCAAGGACAAGGACACGCTTAAGGTGATTCACATTGTTGAACCGCCCACACTTACTCTGACTTTTACCGATGTGGAGAACTCCATTAAAAGCGCATCTAAGACCTGCATCCAAACCTCGGTCCACACTTCAGTGACCGACATTTACCCTTCAATCAGCGGTTCCTTTTCCGAATCGCAGAATGCGCTGATTCTTCCGTCGCCCGAACACAAGACTCAACGTTCGCAGCGCTGGCCCGCCGAATTCTCAGTGCCTCGCTTCGCCTACGATACAGAACTTGTGCTTGCGGCGGGAAGCGAAGCTTTCAAGAAGGATGGAATTCAGCTCAACTTTACACCAATCCTTCCAGACATTCTGGAGAAACTGGCTGAAACCATCTTTCAGTACGTGGCCTACCCAACAAGCGCGCAGCTCTCTGACGTTGCCGAGGCGCTGGTTCAGAAGTATCCCTGCCTCAAAGAACCAGGCTCGTATAACGGATGCTATGGATGGAAACaaagactaaaatataaaatgggcAACTACAGGGCGAAACTGAGAGGGCTCGGGTGCCCCGAACTTGACGTTAACTCTATTAAAAAGAAGCGGGCGCATGAAAAAGCTCcggcaaaaaatattaaaaagccaAGAAAGGCAGAGGTGAACTTTTTACCCCCTCACCCGCAAGGAGAGACCGAAGAAAGCTTGGAAAATGAAAGAGTGGAGCTCCTTAACGAAGTAAAGAGGGGTTTGAACTATCAGATAATCAGTGAAAAAATGGCAAAGACGTTCTCTATTCGCAGGCAGGAAATTGTCAGTCAAGCTACACCAATCAATGACTTAAAATACAGATGGCCCGCGCTTTTCGATGCAGCTCAGataaatgAAGAATTCACAAGGATCACCACTGTTGACTTGGAGGCAACGTTCATGGCAAAACTGGACCAGTACTCTCCTAAAATAATGTCCTTGGTGTTCTCAAGGGGACGCTCTTCAAAAACGAGCATTCAGCGGATTAAGAACATGCTACTAGAGGATTATTCTTTagaaagaaggagagaggcTGCTATCCGTTCCTTAGTGATATATCTCAGAGAAAATGAGGAAGATCTGTTTATAGAACACACGGATGCTGGGGATATTGCCAACGAAGTGATGAAGATTATTATAACAAGAGGTTCCACGATATCAGAACCTGCCAGCGCAAGCATCGTGATCGAGGGAACAGAAGTCCAGCAAGACCTGGACGTACCCAGGGCCTGCGCGCTGCTAATGGGGCTAATATACGCACTCAACCTCAGCTACCCAAAAGAACTGAGAAACACTTTTGAGGCTTTTCAAAAGATCTTCCTCGAGCTGGATGATATGAAAGCTTGCCCAAAGAACAATGTGTGgacaggacttttattttggtccCGCGATGTGACGTCACACGGCCGCGCCACGCTCCTGATGCGCCAGAATTATCGTAGCAACACAGAAGATCACAGTCTCCGAAATGAATCTCTGTAAGGAGAAAGCAGAGGAGGATGTTGTACAATACCAGAACCAGGGAGCAACATCTGCAGAATCCAGAAATGACGAGTCTGCAGAACTGCAGGATTCCCACAGACTAGTAAATGATGGTCTACAGAAAGTAAAAGATCATCACAAATTCAGCACGAAGAACAAGTATGAGACAATCAAACTCAGAATCAGAAGAATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43831 lncRNA upstream 30793 18600428 ~ 18603316 (+) True G29591
XR_006250718.1 lncRNA upstream 39993 18591447 ~ 18594116 (+) True LOC122343196
TU43761 lncRNA upstream 168272 18441631 ~ 18465837 (+) True G29548
TU43755 lncRNA upstream 173514 18435643 ~ 18460595 (+) True G29544
TU43674 lncRNA upstream 573193 18059335 ~ 18060916 (+) True G29484
TU43851 lncRNA downstream 15932 18662860 ~ 18665083 (+) True G29600
TU43888 lncRNA downstream 138117 18785045 ~ 18785246 (+) True G29627
TU43902 lncRNA downstream 167955 18814883 ~ 18815278 (+) True G29633
XR_006250682.1 lncRNA downstream 256307 18903235 ~ 18907824 (+) True LOC122343164
TU44148 lncRNA downstream 285391 18932319 ~ 18932690 (+) True G29777
XM_043237265.1 mRNA upstream 1672 18627425 ~ 18632437 (+) True LOC122343000
XM_043237264.1 mRNA upstream 1672 18628328 ~ 18632437 (+) False LOC122343000
XM_043237268.1 mRNA upstream 6838 18619942 ~ 18627271 (+) False LOC122343002
XM_043237267.1 mRNA upstream 6838 18622264 ~ 18627271 (+) True LOC122343002
XM_043237270.1 mRNA upstream 6838 18623021 ~ 18627271 (+) False LOC122343002
XM_043236045.1 mRNA downstream 111626 18758554 ~ 18782810 (+) True LOC122342235
XM_043237430.1 mRNA downstream 158522 18805450 ~ 18809963 (+) False LOC122343102
XM_043237434.1 mRNA downstream 158523 18805451 ~ 18809963 (+) False LOC122343102
XM_043237431.1 mRNA downstream 159204 18806132 ~ 18809963 (+) True LOC122343102
XM_043237432.1 mRNA downstream 159290 18806218 ~ 18809963 (+) False LOC122343102
TU43756 other upstream 172792 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 332920 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2159728 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2648383 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 2792254 15841372 ~ 15841855 (+) True G28891
TU43926 other downstream 236251 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 643292 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 1084334 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 1098813 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 1391010 20037938 ~ 20040195 (+) False LOC122343063

Expression Profile