RNA id: XM_043237267.1


Basic Information

Item Value
RNA id XM_043237267.1
length 3468
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC122343002
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 18619551 ~ 18627271 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGAGGCCCGGTTTTTCTTTTGGTCAAGCTGTTGAAGTGACTTTTTAAATCCAGCTCGTGTTAAATAACGTACATGTCTTGAACATCTAGTTCGAGAAGGTACGGATTTCGGTGAGCTGCTGATGAAATCTAGAAGCTGCTTCCAGCTTCAGGCGTCTCCTCCACCTATCCTAGGCTTTTCAGAACGGCTTTGTTATAGGGATACATGCCCTACATGGATCGAAAACGGCCATTTGACTTTTCAGAGTAACCGTTCTTCTGCTCCGTGGGAAGTAAAGAGAGAAATCCGCTGGCGGTTCGCTACGGTTTGGCTCACACTGAGAGAAGGAAGGGTTATGGCCCTGTGCAAAAGCCAGCCACCAGATTTGCCAGAATCGGTTTCGCCGGTGTTTCAGTCACAATGCTGCGCTTTCCATATACTTTTCAGCATACAAAATAAGTCCTTTTATAGATAGGAGAATGTCTTTCTAAGGCACTTCAACCTGTTCTATAGGTGTTAGCCCACTCTAATGCATTATGGCTTGGTGTTTTCACTCGGGCGTGATATTAGTATGCTTGGAagaaatgcattgtttattgAATAACTGATGtaacataaattatttatagttgGAATAACacgaataaaaatatgaattttgctGTCGTGAAGTTGTATTTGTGCTTTCTGCGTTTGAGCGCATGAGCGGGACTTTAATTATGGCGGAGCGTTATGACGTCATAAAACCGCGCCGCTGCGTCTGCGGGTCGGCTGAGGAAAGACACACAGAACCCCCACGCTGAAGCAGCTGAGATCCATGTGATGCTCGCGCTATTGTGAAGATGGCGTTAATTAAGGAGGAGAGTGAAGAACTTAGGATCGAAGAAGCTTTCAGTCTGAAACAAGAAGATACTGAGGAACAAATAGACCGGATGTCACCAAAGAAGGAGAGCGAAATACTAAATGAAATGGAAGAGAAATATCAGAAACATGATTTCATAACCGGAGAAAAATCTTTTAGCTGTACAAAGGCCGAAAAGACTTCCTCGCGGAACGGAGctaaaaagacagaaactagTTATTTCGACTGCTttcagtgcggaaagagtttcagtCATCATCAGAGCCTCAAAGACCACATGAGAGTTCACGGCGGCGAGAGCCCTTTCACCTGCCGGCAGTGTGGGAAAAGTTTTACTGACAACGGAAGCCTTAAAAGGCACGCGcggattcacaccggagagaagcctttcaccTGCCATGAATGCGGAAGAAGTTTCACCCAGAAAGGAACCCTGAAGAGGCACGCGagaatccacaccggagagaggcCTTACTCCTGCAACCTGTGTGGAAAAAGCTTTAAAGCGGAAATAAACATCAGGTATCACATGAAAATtcacacgggagagaagccGTTCACGTGCGAccagtgcggaaagagtttcagATGCAAAGTGACCCTTAATTGGCACGCGAAGATTCACTCGAGAGAGAACCATTTTATATGTCGACAGTGTGGAATGAGTTTTACGGATCTAGAGCGTTTGAACGGCCACCAAGTAATTCACTCCGGAGAGAAGCCCTTCGAATGCCATCAGTGTGAAAGGATTTTCCGATTCAAAAAATCCCTTAAGGCCCACACGAGAATtcacacgggagagaagccttacGCGTGCCCTCAGTGCGGAAGGTGTTTTACGTACAAAGCCACGCTCGATTCCCACACCAGGAGTCACACCGGAGAAAGCCCTTACACGTGCAAACTGTGCGATAAGAGCTTCTCGCACAATGGAAATCTGAAGAcccacatgagagttcacaccggagagaagccgtttACGTGCGTCGAGTGTGGGAAATCGTTCACTCGTAAAGAAAGCCTCAATTACCACGCCAGGATCCACTCGAGAGAGGTCTCTTTCGCGTGCCGTCGGTGCGGGAAAAGTTTCCCGGACAAGAAACGTCTTAAGGGGCACGTCAGAGTTCACTCCGGAGAAAGCGCTCTGATGTGCCAGTACTGTGGGAAGGGTTTCACGCATAAAGGGAACCTGAAGACTCACATGAGAAtacacaccggagagaaacctttcATGTGCCatcagtgcggaaagagtttcagtCACAACGTGAGCCTCAAGACTCACTTgaggattcacaccggagagaagcctttcacGTGCcgtcagtgcgggaagagttttaGACATAGCGTGAGCTTTAAGACTCACGTCAaaattcacaccggagagaaacctttcACGTGCCTTCACTGCGGAAAGTGTTTCATGTTTCAAGGAAACCTCAAGACTCACGTGAGGGTTCATGCTGGAGAGGGAAAAGACCTTGGCCGCAATTCGAAAACCCATTCTGTAAATAAACTGCAGTGTTCTGTGTGCAACAAGACATTTACGAAAAGGAGCAATTTTAAAAACCACCTGCGCATTCACTCCGGAGAAAGGCCCTTTAACTGTGAtcagtgtaataaaaaattTCTTTCACTGTCACACTTAGAAATACACTTGAAAAGTCACGCAGGTGTGCGACGCTATCAGTGTTCCTCGTGTGGGAAGGGTTTTAAATGGCTTGGCAATTTAAAGTGGCACCAGAAAAGACGCAGCTGTGTAAAATTAAGGTTACGTTCACGTCACACCTGAACGTGGTCGAGTTTTTTTTGCtctgattatttcaaatgtgTCCAAATGTCTAAATAGGTGATGCGGTGTTGTTTTCTCAGGCTTCTTAAAAACACCGGAGGTTGTCATAGGAGATATAGTCATGCTCTTCAAATTCTCCAATTACCGGTTGTTGTTTGAATTTAATATCTTCATTGTCATTGTACCAAGCGCAACAAATTGAATGGCGCAAACCTTCGAGGTGCAGaacaataatacaatacaatacaaatagcCATAGAGGTATAAGTGTAATACCTAGCAACGTACAAAGGGGCCCTCGGCATTTATTGCAGACACTTcaatgttaatgtaaaataacattgcaTCCATCAAAGGGCATGGAGAAATTTGGTAGTTATTTCCCAGCTCTAACTGAGGAGCAGGCAGCGGATCTGTAACGACTTCATGGAGAACATTGGAGCTTCCATCAAGACATCTGGAAGAGCCAGCCTGAAAACCCATTGGTTCCCAATGGCCATTGCCCATGAGGTTCCATTGGAATCATTCTGGTTTGAAATTGCTGAAGAACAACCGGTCTGTCACACAGTTGCAGTGAAGGTGCTAATCCCCTTCAGCACCACCCACCAACTACAACAGCCCTTTAAAACCAAATACAGGGCCAGTGAACTAATGCTTTGACAGCCAGTTTTGTCTGGTACCCAGAACCAGTGTTTTGTTTGGTTACCATTTAGTTGAAGAAAATAATCTAAAAGTTGGACTTAGTAGGGAGGGATTTGATGGTTTACATTTCGTatgttattattacatattgtgTGGATgcgcttaaaataaaataaaatttgataaca

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors
ko05168 Herpes simplex virus 1 infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43831 lncRNA upstream 18948 18600428 ~ 18603316 (+) True G29591
XR_006250718.1 lncRNA upstream 28148 18591447 ~ 18594116 (+) True LOC122343196
TU43761 lncRNA upstream 156427 18441631 ~ 18465837 (+) True G29548
TU43755 lncRNA upstream 161669 18435643 ~ 18460595 (+) True G29544
TU43674 lncRNA upstream 561348 18059335 ~ 18060916 (+) True G29484
TU43851 lncRNA downstream 35589 18662860 ~ 18665083 (+) True G29600
TU43888 lncRNA downstream 157774 18785045 ~ 18785246 (+) True G29627
TU43902 lncRNA downstream 187612 18814883 ~ 18815278 (+) True G29633
XR_006250682.1 lncRNA downstream 275964 18903235 ~ 18907824 (+) True LOC122343164
TU44148 lncRNA downstream 305048 18932319 ~ 18932690 (+) True G29777
XM_043237231.1 mRNA upstream 56898 18556569 ~ 18565366 (+) True trim24
XM_043237233.1 mRNA upstream 56898 18556569 ~ 18565366 (+) False trim24
XM_043237232.1 mRNA upstream 56898 18556571 ~ 18565366 (+) False trim24
XM_043237471.1 mRNA upstream 67875 18547531 ~ 18554389 (+) True rab21
XM_043237484.1 mRNA upstream 401007 18218716 ~ 18221257 (+) False LOC122343129
XM_043237265.1 mRNA downstream 154 18627425 ~ 18632437 (+) True LOC122343000
XM_043237264.1 mRNA downstream 1057 18628328 ~ 18632437 (+) False LOC122343000
XM_043237266.1 mRNA downstream 6838 18634109 ~ 18646928 (+) True si:ch211-166e11.5
XM_043236044.1 mRNA downstream 19527 18646798 ~ 18655105 (+) True LOC122342234
XM_043236045.1 mRNA downstream 131283 18758554 ~ 18782810 (+) True LOC122342235
TU43756 other upstream 160947 18436460 ~ 18461317 (+) True G29545
TU43729 other upstream 321075 18300415 ~ 18301189 (+) True G29526
TU42966 other upstream 2147883 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 2636538 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 2780409 15841372 ~ 15841855 (+) True G28891
TU43926 other downstream 255908 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 662949 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 1103991 19731262 ~ 19786128 (+) False G29835
TU44230 other downstream 1118470 19745741 ~ 19747442 (+) False LOC122343071
TU44267 other downstream 1410667 20037938 ~ 20040195 (+) False LOC122343063

Expression Profile