RNA id: XM_043237275.1


Basic Information

Item Value
RNA id XM_043237275.1
length 2125
RNA type mRNA
GC content 0.38
exon number 5
gene id LOC122343006
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 22429074 ~ 22431623 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATACATCTCAGTGGTACAGGCACAAAAGTCATGGAACTAGAACAAGTTGTTGGACAAAAGACCAGTGAGGAGGAACTGGACAGAGATAAAGATATTTGTGGTAATAAGGACCACAAATCTAAAGAAAGAGCCCAAAACCACAGAATTGTTTTGAGTACAGTATGCTTTGGCATCGTATGCATTTCCATTTTGGCTGGCATTGTAGTACTGCATATCAAGCTCATGGCAGATAAAGATACACAGATGTTACTGTCCAGTTCAAGATGTCAAACTGAGAAAGACCAGCTACAGAACGACTTTAACTCTCAGAAGAATCACGAGTTGAAGAAAACAGTCAATGATACCACTTTTGAAACAAGCCAGTTACTGAAATATTGTGAGTCTGTGAATGAGAAGAATCAGGAAATGATGAAAAGAGTCAATCAGCTCTCTTTTGAAAAAACTTGTGACTCTTTGAATCAGACAAAACTGGAGCTGGAAAAGAGAATTGACAAACTTGCTTCTGAAAAAAGCCAGTTACTGGGACGTTTTGACTCTTTCAGTCAGAGGAATCAGGAGTTGGAGAAAAGAGTCAATCAGCTCTCTTTTGAAAAAAGCCAGTTGCAGGGAACTTGTGACTCTTTGAATCAGACAAAACTGGAGCTGGAAAAGAGAATCGACAATCTTGCTTCTGAAAAAAGCCAGTTAAATGGAAGTTTTGACTCTTTCAGTCAGAAGAATCAAGAGTTGGAAAAAAGAGTCCATGATCTCTCCTCTAAGAAAAGCCAGTTACAGGAAAGTTTTGACTCTGTCAGCCAGAAGAATCAAGAGTTGGAGAAAAGAGTAGATGATCTCTCCTCTAAGAAAAGCCAGTTACAGGAAAGTTTTGACTCTTTGAATCAGACAAAACTGGAGCTGGAAAAGAGAATCGACAATCTCACTTCTGAAAAAAGTCAGTTACAGGGACGTTTTGACTCTTTCAGTCAGAAGAATCAAGAGTTGGAGAAAAGAGTCAATGATCTCTCCTCTAAGAAAAGCCAATTACAGAGAAATTGTGAGTCTGTGAATGAGAAGAATCAGGAAATGATGAAAAGAGTCAATCAGCTCTCTTTTGAAAAAAGCCAGTGGCAGGGAACTTGTGACTCTTTGAATCAGACGAAACTGGAGCTGGAAAAGAGACTCGATAATCTTGCTTCTGAAAAAAGCCAGCTACAGGGACGTTTTGACTCTTTCAGTCAGAAGAATCAAGAGTTGGAGAAAAGAGTCGATGATCTCTCCTCTAAGAAAAGCCAGTTACAGGAAAGTTTTGACTCTTTGAATCAGACAAAACTGGAGCTGGAAAAGAGAATCGACAATCTCACTTCTGAAAAAAGCCAGTTACAGGGAGATTTTGACTCGTTGAGTCAGAAGAATCTGCAGTTAGAGGCAGAACtaaaaaagttacttaaaaaAGgtttTGTGTTCTGGTACAGTGACGTGATGACCTGGTCTGACAGCAGGCAGTACTGCAGGGATCAGGGTGGTGATCTGGTCATTATCAAAAGTGAAGACAAGCAGACATTAATTTCTTCAGTGGTCAAGGAGATTGTGTGGATTGGTTTGTCTGATGTAAAAATTGAGGGGGAAATGAAATGGGTGGATAATTCATCGCTGAATCAAACGTTTTGGTCTGGAAACGAGCCAAATAACGAGGGTGGAAATGAGGGCTGCGTCGAACTGATACCTTCGTACGCTATCCTGAAAAACTGGAATGATGTCCCATGCTCACAGAAGAGAAGAGGGATCTGTGAGAAGTAGCTTTGCTTCCTTTATCTTCCTGACACTTAAtagctattttaataatataattgctTTTATAATTTCTCTATTAAAAATAGGCTTTTGATTTTTACTGCAGTAATAAATCTCACAGCATTCTGCTTCTAATTTTTTCGATCTGAAGAGTTGACCATATCCTGCAAGCAAATGTTAAGCATACTGCTTACAGTATTTTAgtcaaatgaaatacaataaagtaaAAGTAGCGGCACTTCTTCTTTTGGTTTTGCCAGGAGATAATTGATCTACTATtagtttaattgatttttatttacattttgctttgttATCTTTCTTGAAAGTGATTgctttttttcatgaataaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45181 lncRNA downstream 317 22425592 ~ 22428757 (-) True G30506
TU45173 lncRNA downstream 7121 22359217 ~ 22421953 (-) True G30499
XR_006250717.1 lncRNA downstream 31051 22396518 ~ 22398023 (-) True LOC122343195
TU45132 lncRNA downstream 147885 22280672 ~ 22281189 (-) True G30465
TU45059 lncRNA downstream 619456 21676876 ~ 21809618 (-) True G30423
TU45193 lncRNA upstream 55152 22486775 ~ 22487119 (-) True G30518
TU45195 lncRNA upstream 55797 22487420 ~ 22488169 (-) True G30520
TU45204 lncRNA upstream 68539 22500162 ~ 22501174 (-) True G30525
TU45232 lncRNA upstream 138012 22569635 ~ 22570058 (-) True G30547
TU45728 lncRNA upstream 339232 22770855 ~ 22772854 (-) True G30920
XM_043237171.1 mRNA downstream 33474 22385863 ~ 22395600 (-) True LOC122342948
XM_043237170.1 mRNA downstream 94281 22325510 ~ 22334793 (-) True LOC122342947
XM_043237479.1 mRNA downstream 108977 22315908 ~ 22320097 (-) True LOC122343126
XM_043237393.1 mRNA downstream 190067 22235757 ~ 22239007 (-) True LOC122343076
XM_043237439.1 mRNA downstream 550282 21870416 ~ 21878792 (-) True LOC122343106
XM_043237366.1 mRNA upstream 63663 22495286 ~ 22499529 (-) True LOC122343060
XM_043236105.1 mRNA upstream 136601 22568224 ~ 22577494 (-) True LOC122342313
XM_043236107.1 mRNA upstream 146723 22578346 ~ 22585463 (-) True LOC122342314
XM_043237371.1 mRNA upstream 156100 22587723 ~ 22593908 (-) False LOC122343061
XM_043237368.1 mRNA upstream 156100 22587723 ~ 22593907 (-) False LOC122343061
TU45110 other downstream 183914 22128454 ~ 22245160 (-) True G30450
TU45123 other downstream 212604 22216035 ~ 22216470 (-) True G30457
TU45011 other downstream 652268 21629617 ~ 21776806 (-) True G30396
TU44977 other downstream 688744 21737091 ~ 21740330 (-) True G30372
TU45006 other downstream 1042637 21383469 ~ 21386437 (-) True G30395
TU45768 other upstream 1003357 23434980 ~ 23437015 (-) False LOC122342328
TU45855 other upstream 1065506 23497129 ~ 23546369 (-) False G31017
TU45890 other upstream 1313863 23745486 ~ 23771768 (-) True G31050
TU45934 other upstream 1678601 24110224 ~ 24110673 (-) True G31091
TU46017 other upstream 1872473 24304096 ~ 24497596 (-) True G31134

Expression Profile