RNA id: XM_043237278.1


Basic Information

Item Value
RNA id XM_043237278.1
length 2741
RNA type mRNA
GC content 0.56
exon number 6
gene id LOC122343009
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17805840 ~ 17811463 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATCCTTTCTTGGAGATTAACAATGAATATAACAGATCCTTATTATGATGCGTCAGACTGTGGGACTTCAGTACAAGTATACTGAAGCCGATTTAAAGAAAGCGCGTgcttttctgtttgtatttggTGCGCTATATATGAGCTGAATCAGACTTTGACTTTGGGGAGTGTGCGTCAAAACGCGTCTCTTATTCACGCTAACAAAGTGCGCGTCAAACATACCCGTACGGTCTGCACGCCACGGCCTCTGCGGATAAATAGCACACAAAATGCAAATCTCCTGCCACTGATTGGCAAATTCAAGCGCCCCAAACCTTGGCTCACGAAACCCCGCCGGCCTCTGTAGAGATCGCAGGACCCTAAATATTCTATGAacgccaaaacaaaaacaaagtgcgTATCACATGCACGCAAGACGTCCTATCACGTGCACGCCAAACTCACTTTTTTTGCGTATAGATTGCAGGCAAAGTGCAAAAATCGTGCTACTGATATTTCAACCCTTTCGAAGCCCTCACAGCACGGCCACAAAAGcgcgtatcatatgcacgccgACGTCACTTCACGCGTACGCCACAAAACCTCAGTTCACGAACTTTCCCTTGAGGAACCCAAACGCGGTTTTCTGTACTTCTTTGGCCTTTTTATCTATACGCTCGCTTTCTTAGTTGGCAACCTCCACCCGAAAGGGATGAGTGGCCACAAAAGCAGATCGAGACAGTGAATGAGCGAGCCCTCTCCTGGGACTCTGTCTTTTTGCTCAGGGTTGCAGGTTTGCCCCTTCACCACCGCCCATGCGTCAGATGATGCTCGCGCGCTCCGACTATAAAAGACGCCGGTGCGCCATCCCGACCGgcactctctttctctttctctgtcttccCGCATCCACACACTTACTTCACTCGCTCGGTCCGTGATCTCCAGCGCGCCAGCATGAGCTATTCCGGCGACATGTACACGAGCAGCTCCTACAGGAAGATTTTCGGAGATGCGCCGCGGCGCGTCCCGACGGCGGGTTACCGCTCCGGAGCGCAGCTTCAGCAGCAACATCAGCACCGCACCTACGGCTCTCCGTCCCCTGCGATCGTATCCTCAAGTTACCGGACCAAGCGCGGCTTCCAGCCCATGCAGGACTCCGTGGACCTGACCCAGACCACCGCCATCACCAACGAGCTGAAGATCATCCGCACCAACGAGAAGGAGCAGCTGCAGGGCCTGAACGACCGCTTCGTGACGTTCATCGAGAAGGTGCACAACCTCGAGCAGCACAACAAAGTTCTGGAGGCGGAGGTCGCGCTGCTGCGCCAGCGTCACAGCGAGCCGTCGCGTCTGCACGACCTCTACGAGCAGGAGATCCGCGAGCTGCGCGCGCGCGTCGAGGAGCTGACGCACGAGAAGAGCCAGATGCACCTGGACTGCGTGCAGATGAACGACGCGCTGGAGCGCCTCAAGGACAAGCTGGAGGAGGAGAGCCGGCTGAGGGAGGAGGCCGAGGGCAGTCTGAAGGGGTACCGCAAGGACGTGGACGACGCCACGCTGACGCGCCTGGAGCTGGAGAAGAAAGTGGAGTCTCTGCTGGATGAGATCGCCTTCCTCAGGAAGGTGCACGAGGAGGAGCTGCAGGAGCTCCAGGCGTCGCTCCAGGCCACGCAGGTGTCTGTGGAGATGGGCGTGAGCAAGCCGGACCTCGCTGTAGCCCTGAAGGACATTCGTGTCCAGTCACAGTCTCTCTCCCGGAACCAGCAGCAGGCGGAGGAATGGTACCGCTCAAGTTCGTCCACGGTGACGAGGGCGGCGGCGCGCAACAACGATGCCCTGAAGCAGACCAAAGACAGGCTGTGTGAGTACCGCCGACAGCTGCAGGCCCGCACCCTGGAGATCGAGGCCCTGAAAGCCCACAACGAGGCTTTAGAGAGACAGCTGGCGGAGATGGAGGACCGCCACAGCAACGAGATCGGCGAGCTGCAGGACACTATTCAGCAGCTGGAATCCGCTCTGAGGAGCACCAAGGGTGAGATGTCCCGTCATCTGCGTGAATACCAGGACCTGCTAAACGTCAAGATGGCGCTGGACATCGAGATCGCCGCCTACAGGAAGCTGCTGGAAGGAGAGGAATGCCGTCTGAGCTCTGTGGGCGGTGCCTTGCTACACTCCGCCTACTCTTACACGCCGAGCCGCACCTATGCCCTGAGGAAGGGCGGAGCCAAACCCgagacagaggaagaggaagagcaggaagaggaagaagaggaggagaaggaagaggaaggagaagaggaggaggaggagaggaggaggccGAGAAGGAGAAGAACAGGACGGGGGGAGGCGGcgaggagggaggaggaggaggaggaagaagaagaagaacaggaggatgagaaggaaaaggaaaaagccGATGAGAAGAAGGAaaaggaagagaagaagagcccaaaggaacagaaagagaatgagaaagagaaagaaaaggagaaggagaaggagaagaagagcGATAGCAATAAGGCAGACAGCAAGAGCGCTAAGAGTGAGAAGGGGGACAATAACAAGAGTGAGAAGACCTCGGCGCTCAAGAGCAAGTAAAGCATCGACAAAAACACATCCagcgtccatccatccatccatcctcacCTCACTGACCTCATCTGGATCTCTGCTGCTGACCCAAGAGTTCTGCTCATCATTTACTTTCTTACAATAAGAGAGTGTTTCACACAAACCTCCGGAAGGAAAGA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43408 lncRNA upstream 59523 17745528 ~ 17746317 (+) True G29306
TU43407 lncRNA upstream 66173 17738067 ~ 17739667 (+) True G29305
XR_006250674.1 lncRNA upstream 94129 17710055 ~ 17711711 (+) True LOC122343158
XR_006250563.1 lncRNA upstream 136079 17667150 ~ 17669761 (+) True LOC122342426
TU43359 lncRNA upstream 251650 17553833 ~ 17554190 (+) True G29272
TU43425 lncRNA downstream 6083 17817546 ~ 17817933 (+) True G29317
TU43456 lncRNA downstream 6683 17818146 ~ 17818416 (+) True G29331
TU43464 lncRNA downstream 11787 17823250 ~ 17823740 (+) True G29334
TU43465 lncRNA downstream 11930 17823393 ~ 17823771 (+) False G29334
TU43468 lncRNA downstream 11930 17823393 ~ 17823740 (+) False G29334
XM_043236807.1 mRNA upstream 139943 17644435 ~ 17665897 (+) True kdr
XM_043236808.1 mRNA upstream 175018 17582070 ~ 17630822 (+) True clocka
XM_043236810.1 mRNA upstream 175018 17582070 ~ 17630822 (+) False clocka
XM_043236809.1 mRNA upstream 175018 17607074 ~ 17630822 (+) False clocka
XM_043237590.1 mRNA upstream 227036 17565453 ~ 17578804 (+) False nmu
XM_043237493.1 mRNA downstream 89978 17901441 ~ 17902917 (+) True oxt
XM_043237498.1 mRNA downstream 100976 17912439 ~ 17915594 (+) True fabp1a
XM_043237496.1 mRNA downstream 100978 17912441 ~ 17915435 (+) False fabp1a
XM_043237497.1 mRNA downstream 100978 17912441 ~ 17915435 (+) False fabp1a
XM_043237406.1 mRNA downstream 121842 17933305 ~ 17937916 (+) True exosc2
TU42966 other upstream 1331459 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1820114 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1963985 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 2150659 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 2250158 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 488952 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 624997 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1071716 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 1478757 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 1919799 19731262 ~ 19786128 (+) False G29835

Expression Profile